BAC Information

Click to search

BAC

Clone NameB6Ng01-218L03
Chromosome1 (Build37)
Map Location 104,769,809 - 104,770,082
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218L03.bB6Ng01-218L03.g
ACCGA034755GA034756
length1,0981,083
definitionB6Ng01-218L03.b B6Ng01-218L03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggtctgtgttcattcagagatgatgcacctaattcaagagat
tggcagccccagagagtttagtgatcaattggggtgggaagtaggggcat
ccatgtggagtcaggatggggaggaggtctgggatgtggagcactccaag
tgtggcctggcaggggctgataaaatatggattgtgaaaacattaataat
taattaaaagaaaaaaaaagaaacaaattgaagcctgatagatataagac
cgaatctcaatgtaattttgaattgtatttctactccagggccaatccca
gtgggagtcttctttcttgtcggttcttcttgaggcagaggtgagggaag
aacatcagcagagagtaagacttggtcatatgagatacaggcatgacttt
gtcttactagatatttagggttgctgcataataatgacgagtttacttat
tgtactggctggttttatgtgtcaacttgccacaggctggggttatcaca
gagaaaggagctttagttggggaagtgcctccatgagatccagctgtggg
gtattttctcaactagtgatcaagggggaaaggccccttgtgggtgggac
catctctggtctgtcagtcttgggttctataagagagcaggcagggcaaa
gacagaaaagaatatccctccatggcctctgcatcagctcctgcttcctg
acctgcttgtgttccagttctgacttccttggtaatgaacagcagtatga
agtgtaagctgaataaaccctttcctccccaacttgcttctaggtcatca
tatttgtgcaggaatagaaaccctgtctatgacacttatctaagtctatg
ttaccttgctactgtagctgacctgccttctgtgaccatctgagaccaga
acaagtttttttcctaaaactatcaaagcattaagtgaatagccttttgt
actattctcagcaggaacttctactactctttcagcctctattatgttaa
atagcaggaagagaaagggacatttagaaagttgactatagcatttctac
tagttgtaaaactttgctatgaaagcttaacttaggggaaaagcagaa

gaattctcagcttagttctataccccatattttgagtgggttgtttggtt
tttttggtaattaacttctttatatattttggacattagcactctattag
atatgtggttagtgaagatttttttccaatctgtacaatgccaatttctc
ttattgactatgtcctttgtgttacagaaagaagcttcccactttcatga
ggtcccatatttcagttattgatcttacatcatgaacctttggagttctg
ttcaggaaattcccacctgtgccaatgagttcacgtctctttcccacttt
cttttctattagattctgtgtatctggttttatgttgaggtccttgatcc
acatggatttgacgtttgtacaggtgacaaataatgggtctattttcatt
cttctacataaagacagccagttagaccagaaccattaattgaaattgct
ttctttttccattgtatatttttagcatctttatcaaagatcaagagttc
ctaaatgtgtggtttgattcctgggtctccaattctgtttcactgaacaa
catgtctgtctctgtaccaataccatgcactttttatcactatagctcta
tagtaaagcatgaggtcagggatggtcatttccccagctgttcttttatt
gttaaaaattgttttcactcttttgggacttttgcctctccagatgaatt
tgagaattgctctttccatgcctttgaagaattgtgttgggattcttatg
gcaattgcattgaatctatgaattgcttttgatagggtggccatttttac
gatgttaactctgccaatctgagactatgggagatctctccatttctgag
atcttcttcaaattcttttctcaagagacttgaagttattgttatataga
tctttcacttgtttggtgagagttattccagatattttatattatttgtg
gctattgtgaatgagttgaggtccttgtccaggtaacttaggatgagttc
ctaagtgtcctaaagacagtcctttaaaggaccagaatattcttacctaa
cctgagttgtatatgcacagccattacaattag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_104769809_104770082
seq2: B6Ng01-218L03.b_880_1144

seq1  ACTTATCTAAGTCTAAGTTACCTTGTTACTGTAGCTGACATGCCTTCTCT  50
      ||||||||||||||| ||||||||| ||||||||||||| |||||||| |
seq2  ACTTATCTAAGTCTATGTTACCTTGCTACTGTAGCTGACCTGCCTTCTGT  50

seq1  GATCCTCTGAGGCCAGAAAGGGCAGTTTCGGGCACTTAACACCTCTTCAT  100
      || | |||||| ||||||     |||||               | ||| |
seq2  GACCATCTGAGACCAGAA---CAAGTTT---------------TTTTCCT  82

seq1  CAAAC-AGCAAAGAATTAAGT--------ACTTGTATTA-TCTCAGCAGG  140
       |||| | ||||| |||||||          ||||| || ||||||||||
seq2  AAAACTATCAAAGCATTAAGTGAATAGCCTTTTGTACTATTCTCAGCAGG  132

seq1  AACTGCACAGCGCTA-ACTTTCAACCAGCTA----GTCAAAATTTGCAGG  185
      |||| |      |||  |||||| ||  |||    || |||  | |||||
seq2  AACTTC----TACTACTCTTTCAGCC-TCTATTATGTTAAA--TAGCAGG  175

seq1  AAGATAAAGGGACAGACACTTAGAGAAGTGATTATTGAGTTTATTCCTAA  235
      |||| |||||    |||| ||||| |  ||| ||| |  |||  | ||| 
seq2  AAGAGAAAGG----GACATTTAGAAAGTTGACTATAGCATTT-CTACTAG  220

seq1  GTTTA-----TTCCTATTAAAGC-TATCTGAGGGGAAAAGCAGAA  274
       | ||     || |||| ||||| || || |||||||||||||||
seq2  TTGTAAAACTTTGCTATGAAAGCTTAACTTAGGGGAAAAGCAGAA  265


| Home | SequenceCutter | Blast | Download |