BAC Information

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BAC

Clone NameB6Ng01-218L17
Chromosome1 (Build37)
Map Location 99,901,085 - 100,082,586
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC670708, LOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
Downstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218L17.bB6Ng01-218L17.g
ACCGA034782GA034783
length1,1811,151
definitionB6Ng01-218L17.b B6Ng01-218L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,081,400 - 100,082,586)(99,901,085 - 99,902,258)
sequence
gaattccaataagatctcagagaagctctgaggttatttgggttattcgg
gcagatttctgtttataggcaactcccaacaggccattgcactgcccagt
taagtcttgatgttcctttattatgtcgaaggaacaaagaattgactgac
aaagaattcacataaaacagggtgctactctgtttttttatttcgttttt
gagataaggtcttcatgtttagctcaggctatccccaaactcataattgt
ctttgtcagccttccaatttctaggtgtatatatgccaccatgcctggct
tcataaaaactgttttaatgtttgaaaagtactaaataattcctttcttt
tcagacaatggatctcaggagtgtttgtgctgttttgttcagagaggaga
tcgatgaggaccctctatcctctcaagtactttcttaacttaccttatag
attaatcaatttgtcctcggaacccatctcacttctatcttctgagagat
ttggttttgttttatttcatttttgttttcatgaaaaatgcactgctttc
tcctttggaatcccacagcagtaaggacttctgtgaaaggaggtcacaca
gtaggcattcatgttatcctgaatgtcagtcaatgttctccttcccaaac
ttgctttcattcagtttcaagctgctataaatatcactttccacaaagct
caaaagattctctttaaagtgacttggccactttaaaatcattcatgttt
taaagatagcaagaacaaatagcatttctttaaaaattgaggagatccaa
cttttatgatggtgtggatctgctgtataaattatattctaaaaagcctc
aatttgtgtatgccaacttgatattagaaatagtaaatagaaatgagcct
actgtgttctcagcttttttcctaaaattcatgtgacaaaacattaatcc
acaagttgatataattaataaaatagaagctatgggagtggatcttgtca
gtgtcactctgaaagtcactccgttgggattatgtcccccttcagcatgt
gtggatacaatgagaagcatgtacacagcacgagcagttcttcccagtta
caggcctctgtggcaactgctcttgacatccagctttcagcctaggagaa
aatatccatatggttccaagtcattccagtc

gaattcactactttgcccagacggactttgatgttacagtgttcttctaa
gtgctagggtcccatacaagtgccaccatgcatgaatccttcaaaggcct
tgttactatttgcatgacccacacagtgtggtctggcttgttctttcgtg
catttaaatacttgtaattacaggtatatacttctagaattgggctgggg
tcaggattggaagcaagatggcagtgagaaagtgagcttactgagagcag
ctgggtgtaccagtattgttcccagcctggcaaactattccaaggaaaga
ggacaaaggaaagcagcattagctcagctccagtaacggatagcagcaca
aacgccccgacgcaaggcttgcaatatggccagtggttgtctctcctctt
ccacattttggttctgacgatttaaagaagctatcacagcaaaagaaatt
gatgagtcaagagcaagtgcactactaaatgtgagctagtagctgataaa
atatagatcacagaggaaacctacactttgaaacacgttgaaatacagtt
tcacacttcatgtccccagttccaatccccatttattaatttttatcaaa
gcatagaaccatatcaagtcctagttactttagaaacatggcttctctca
caatgcttgataaaggaagcattaataattaaagaagggctggaagtagt
acccctaagattctttggcacaatgttttcatattattcaataatggaca
gggaaatcatgtatccctctgaataaatgaaagaaatggaatgtctggtt
gcaattagtttgataatagagcaaaatctaattttcaagtatttcgatgg
ctagaaatagagccattagacttcacaagagtccagccttcagacacaat
aaacttgctaattaatttgtagtttctcttacacagggtctcgagagtgg
acgttacatgtaaaaccacagctgttattccagtacgacacagtgttagt
cgacatttgcttctatcttgagattctttatcatctcaaatgctgtccta
ttttctcttcatgttacaatgtacataatctaaaaaaggatcattcttct
taagattccaagctgatgatggcttccttcctatcagtcaagtgttcact
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100081400_100082586
seq2: B6Ng01-218L17.b_42_1222 (reverse)

seq1  GACTAGAATGACTTGGAAACA-ATAGATTTATTTCTCCTAGCTTGGAAGG  49
      |||| ||||||||||||| || || ||| | ||||||||||  | ||| |
seq2  GACTGGAATGACTTGGAACCATATGGATAT-TTTCTCCTAGGCT-GAAAG  48

seq1  CTGGGATGTCAAGAGCAAGGTGGCCACAGA-GCCTGTAACTGGGAAGAAC  98
      || ||||||||||||||  || |||||||| |||||||||||||||||| 
seq2  CT-GGATGTCAAGAGCA--GTTGCCACAGAGGCCTGTAACTGGGAAGAA-  94

seq1  CTGCTTCGTGCTGTGTACATGGCTTCTCATTGTATCCACACATGGCTGAA  148
      |||| ||||||||||||||| |||||||||||||||||||||| ||||||
seq2  CTGC-TCGTGCTGTGTACAT-GCTTCTCATTGTATCCACACAT-GCTGAA  141

seq1  GGGGGACAT-ATCCCAACGGAGTGACTTTCAGAGTGACACTGACAAGATC  197
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACATAATCCCAACGGAGTGACTTTCAGAGTGACACTGACAAGATC  191

seq1  CACTCCCATAGCTTCTATTTTATTAATTATATCAACTTGTGGATTAATGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCATAGCTTCTATTTTATTAATTATATCAACTTGTGGATTAATGT  241

seq1  TTTGTCACATGAATTTTAGGAAAAAAGCTGAGAACACAGTAGGCTCATTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACATGAATTTTAGGAAAAAAGCTGAGAACACAGTAGGCTCATTT  291

seq1  CTATTTACTATTTCTAATATCAAGTTGGCATACACAAATTGAGGCTTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTACTATTTCTAATATCAAGTTGGCATACACAAATTGAGGCTTTTT  341

seq1  AGAATATAATTTATACAGCAGATCCACACCATCATAAAAGTTGGATCTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAATTTATACAGCAGATCCACACCATCATAAAAGTTGGATCTCC  391

seq1  TCAATTTTTAAAGAAATGCTATTTGTTCTTGCTATCTTTAAAACATGAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTTAAAGAAATGCTATTTGTTCTTGCTATCTTTAAAACATGAAT  441

seq1  GATTTTAAAGTGGCCAAGTCACTTTAAAGAGAATCTTTTGAGCTTTGTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAAGTGGCCAAGTCACTTTAAAGAGAATCTTTTGAGCTTTGTGG  491

seq1  AAAGTGATATTTATAGCAGCTTGAAACTGAATGAAAGCAAGTTTGGGAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGATATTTATAGCAGCTTGAAACTGAATGAAAGCAAGTTTGGGAAG  541

seq1  GAGAACATTGACTGACATTCAGGATAACATGAATGCCTACTGTGTGACCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATTGACTGACATTCAGGATAACATGAATGCCTACTGTGTGACCT  591

seq1  CCTTTCACAGAAGTCCTTACTGCTGTGGGATTCCAAAGGAGAAAGCAGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACAGAAGTCCTTACTGCTGTGGGATTCCAAAGGAGAAAGCAGTG  641

seq1  CATTTTTCATGAAAACAAAAATGAAATAAAACAAAACCAAATCTCTCAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCATGAAAACAAAAATGAAATAAAACAAAACCAAATCTCTCAGA  691

seq1  AGATAGAAGTGAGATGGGTTCCGAGGACAAATTGATTAATCTATAAGGTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAAGTGAGATGGGTTCCGAGGACAAATTGATTAATCTATAAGGTA  741

seq1  AGTTAAGAAAGTACTTGAGAGGATAGAGGGTCCTCATCGATCTCCTCTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGAAAGTACTTGAGAGGATAGAGGGTCCTCATCGATCTCCTCTCT  791

seq1  GAACAAAACAGCACAAACACTCCTGAGATCCATTGTCTGAAAAGAAAGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAACAGCACAAACACTCCTGAGATCCATTGTCTGAAAAGAAAGGA  841

seq1  ATTATTTAGTACTTTTCAAACATTAAAACAGTTTTTATGAAGCCAGGCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAGTACTTTTCAAACATTAAAACAGTTTTTATGAAGCCAGGCAT  891

seq1  GGTGGCATATATACACCTAGAAATTGGAAGGCTGACAAAGACAATTATGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCATATATACACCTAGAAATTGGAAGGCTGACAAAGACAATTATGA  941

seq1  GTTTGGGGATAGCCTGAGCTAAACATGAAGACCTTATCTCAAAAACGAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGGATAGCCTGAGCTAAACATGAAGACCTTATCTCAAAAACGAAA  991

seq1  TAAAAAAACAGAGTAGCACCCTGTTTTATGTGAATTCTTTGTCAGTCAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAACAGAGTAGCACCCTGTTTTATGTGAATTCTTTGTCAGTCAAT  1041

seq1  TCTTTGTTCCTTCGACATAATAAAGGAACATCAAGACTTAACTGGGCAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTCCTTCGACATAATAAAGGAACATCAAGACTTAACTGGGCAGT  1091

seq1  GCAATGGCCTGTTGGGAGTTGCCTATAAACAGAAATCTGCCCGAATAACC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCCTGTTGGGAGTTGCCTATAAACAGAAATCTGCCCGAATAACC  1141

seq1  CAAATAACCTCAGAGCTTCTCTGAGATCTTATTGGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACCTCAGAGCTTCTCTGAGATCTTATTGGAATTC  1181


seq1: chr1_99901085_99902258
seq2: B6Ng01-218L17.g_65_1215

seq1  GAATTCACTACTTTGCCCAGACGGACTTTGATGTTACAGTGTTCTTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACTTTGCCCAGACGGACTTTGATGTTACAGTGTTCTTCTAA  50

seq1  GTGCTAGGGTCCCATACAAGTGCCACCATGCATGAATCCTTCAAAGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGGGTCCCATACAAGTGCCACCATGCATGAATCCTTCAAAGGCCT  100

seq1  TGTTACTATTTGCATGACCCACACAGTGTGGTCTGGCTTGTTCTTTCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTATTTGCATGACCCACACAGTGTGGTCTGGCTTGTTCTTTCGTG  150

seq1  CATTTAAATACTTGTAATTACAGGTATATACTTCTAGAATTGGGCTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAATACTTGTAATTACAGGTATATACTTCTAGAATTGGGCTGGGG  200

seq1  TCAGGATTGGAAGCAAGATGGCAGTGAGAAAGTGAGCTTACTGAGAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATTGGAAGCAAGATGGCAGTGAGAAAGTGAGCTTACTGAGAGCAG  250

seq1  CTGGGTGTACCAGTATTGTTCCCAGCCTGGCAAACTATTCCAAGGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGTACCAGTATTGTTCCCAGCCTGGCAAACTATTCCAAGGAAAGA  300

seq1  GGACAAAGGAAAGCAGCATTAGCTCAGCTCCAGTAACGGATAGCAGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAGGAAAGCAGCATTAGCTCAGCTCCAGTAACGGATAGCAGCACA  350

seq1  AACGCCCCGACGCAAGGCTTGCAATATGGCCAGTGGTTGTCTCTCCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCCCGACGCAAGGCTTGCAATATGGCCAGTGGTTGTCTCTCCTCTT  400

seq1  CCACATTTTGGTTCTGACGATTTAAAGAAGCTATCACAGCAAAAGAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTTGGTTCTGACGATTTAAAGAAGCTATCACAGCAAAAGAAATT  450

seq1  GATGAGTCAAGAGCAAGTGCACTACTAAATGTGAGCTAGTAGCTGATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTCAAGAGCAAGTGCACTACTAAATGTGAGCTAGTAGCTGATAAA  500

seq1  ATATAGATCACAGAGGAAACCTACACTTTGAAACACGTTGAAATACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATCACAGAGGAAACCTACACTTTGAAACACGTTGAAATACAGTT  550

seq1  TCACACTTCATGTCCCCAGTTCCAATCCCCATTTATTAATTTTTATCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTCATGTCCCCAGTTCCAATCCCCATTTATTAATTTTTATCAAA  600

seq1  GCATAGAACCATATCAAGTCCTAGTTACTTTAGAAACATGGCTTCTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAACCATATCAAGTCCTAGTTACTTTAGAAACATGGCTTCTCTCA  650

seq1  CAATGCTTGATAAAGGAAGCATTAATAATTAAAGAAGGGCTGGAAGTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTTGATAAAGGAAGCATTAATAATTAAAGAAGGGCTGGAAGTAGT  700

seq1  ACCCCTAAGATTCTTTGGCACAATGTTTTCATATTATTCAATAATGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAAGATTCTTTGGCACAATGTTTTCATATTATTCAATAATGGACA  750

seq1  GGGAAATCATGTATCCCTCTGAATAAATGAAAGAAATGGAATGTCTGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCATGTATCCCTCTGAATAAATGAAAGAAATGGAATGTCTGGTT  800

seq1  GCAATTAGTTTGATAATAGAGCAAAATCTAATTTTCAAGTATTTCGATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTAGTTTGATAATAGAGCAAAATCTAATTTTCAAGTATTTCGATGG  850

seq1  CTAGAAATAGAGCCATTAGACTTCACAAGAGTCCAGCCTTCAGACACAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATAGAGCCATTAGACTTCACAAGAGTCCAGCCTTCAGACACAAT  900

seq1  AAACTTGCTAATTAATTTGTAGTTTCTCTTACACAGGGGTCTCGAGAGTG  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAACTTGCTAATTAATTTGTAGTTTCTCTTACACA-GGGTCTCGAGAGTG  949

seq1  GACGTTACATGTAAAAACCAACAGCTGTTATTCCAGTAACGACACAGTGT  1000
      ||||||||||||||||  | ||||||||||||||||| ||||||||||||
seq2  GACGTTACATGTAAAA--CCACAGCTGTTATTCCAGT-ACGACACAGTGT  996

seq1  TAGTTCGACATTTGCTTCTAATCCTTGAGATTCTTTATCCATCCTCAAAA  1050
      ||| ||||||||||||||||   ||||||||||||||| ||| ||| |||
seq2  TAG-TCGACATTTGCTTCTA--TCTTGAGATTCTTTAT-CAT-CTC-AAA  1040

seq1  TGCCTGTTCCTTATTTTCTCTTCAATGGTACAAATGTACATAATCTAAAA  1100
      || ||||  | |||||||||||| ||| ||| ||||||||||||||||||
seq2  TG-CTGT--CCTATTTTCTCTTC-ATGTTAC-AATGTACATAATCTAAAA  1085

seq1  AAGAATTCCTTCTTTCTTAAAGATTTCCATAGTTGTAGTGATGGCTTCCT  1150
      ||| | || ||| ||||| |||| ||||| || ||   ||||||||||||
seq2  AAGGA-TCATTC-TTCTT-AAGA-TTCCA-AGCTG--ATGATGGCTTCCT  1128

seq1  TCCCTATCCATTCAAGTG-TCACTG  1174
      | ||||| || ||||||| ||||||
seq2  T-CCTAT-CAGTCAAGTGTTCACTG  1151


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