BAC Information

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BAC

Clone NameB6Ng01-219K04
Chromosome1 (Build37)
Map Location 52,163,756 - 52,271,038
singlet/doubletdoublet
Overlap geneStat4, Stat1, Gls
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, LOC100042634
Downstream geneLOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219K04.bB6Ng01-219K04.g
ACCGA035414GA035415
length1,1831,149
definitionB6Ng01-219K04.b B6Ng01-219K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,163,756 - 52,164,940)(52,269,860 - 52,271,038)
sequence
gaattccccatattctgctgaatgacggtgcaaacggacactttaaagaa
ggaagcagatgaaactggagagtgttctttaccatagatcacaatttatt
tcttcggctttgtaaataccagtttctagaaaatggtaggaagttggaag
ctctcttctcacttggtgccactcccagcaaggagcgctgtgactaaaat
gctaaaaaacctgcaagaaaagacagctttaagaaaccagtgttggtaac
aatataacagaggactcctttgaaaacatttgtttctggttttatttctt
aggtgttatttatgactttggctcagaaagctatgttaacatttcagggt
gggtcaacaatacgtaatcgtgcctgaattactcaaagccatgggaagat
ttagcaggaaacccagataagaatcttcaaagtagatgtaagatagggga
atgatggggcatgatcatcggtgattcacagggctgcagagatgaatcgt
gaaacctccagatcgtcgggcagagctcatcacgtctgttatgctcatag
ctcctgggatggctctctcagtaggaaaaggatccagggtcattcctgtg
tgcggggcaaatgcactaacattgaaagcccttcaagtggaccgatgggt
aaacgtcttaggaaacgaagcccaggaagcaagtagtaccctggaccttg
gattcctgacatcacttgtaggttgcacagtgtacatctctagaaaatac
tggactggataagttcaggaatccctttgtattccactactctctggtcc
tgtaaacttaatctgagactacagaaggggtaaaccattccagtctctct
gctggagagaaggaaggtgcttaactcactagcactccaagtatataagc
tgcagtgtacaatgggcctctctatggggtctatgaggtcattgctcacg
ctgcccatagcaatcagtagaatttcttcaaggcttgaaagagacaccta
atgtctacctttggccttaatgtcataatgtatatatgtgcacacataca
tactcgtacacgtacgtgtacaaacacacacactaacacaaacacacaca
cacccacagccttatagacgttatccaatatctgctgccttactgagttc
attattcctttgctgccgttctaggagggtgtg
gaattcttgcataattattaaaaagttttataatgagggagaactataaa
gagatgatttgaattttttttttaaatctaaattaagaaatgcctttgga
aaagtgctaaactgtgagaatgttattttcaagaatggtacttttgggct
taggggaagatggcttagtggataaagtgcttggtttacaaaagtgaagc
ctggacttggagtctctggcacagaatcttagacaaatatagtggcttcc
tataattgtagcagttgggaggaaggcagaggttctttctctgaaagctg
gctaacaaactggggagtagaccagctccatgttcagcaggtgccctgcc
tggagaacataaactggagtacggaggaggaaaattgatggtagcctcct
cacaggtgtgcacacacatgcagcgggacatatgcagaaatgtctgcgtg
agttaatgccaagtgtattttaatttagctggaactcagacattaagggt
ttattgtcaagctctagtttggatatgagaagaattatgccatttctttt
ttttcccactggaaaaaaatagtttaaaaatataatccttcctttaagtt
actttttaaaatgaaaatatagcttaacgtaaaaatgtacaactggtaca
tggtatatatagctcgatgaatttatattaatgatataatttcattcctt
ttttttttttttccccaattttgagccagtttctttagctgggcttgcct
aaaacttactttgtaccccaggctatcctcagactatatcttcatgcctc
tatctgtttgatcacgggcatgttccactgtgtctggcagtaccctaaaa
cttactaagactacaagtcaggtaaacttacttttagacttctcttttga
aggtataatttaaacttttttattctgttgtgattttaattatctatgaa
ttattcttagttatataaaagcatggttttttattatagttaacatgtta
attttaggagtattctaaaagggctaggtttactctgagtagtagtagaa
aatcatttacatctataaactgtacttgtttgagtactttagcctttggc
catttttttttgcagtcttcttactactttatgttactgtttgtgtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52163756_52164940
seq2: B6Ng01-219K04.b_45_1227

seq1  GAATTCCCCATATTCTGCTGAATGACGGTGCAAACGGACACTTTAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCATATTCTGCTGAATGACGGTGCAAACGGACACTTTAAAGAA  50

seq1  GGAAGCAGATGAAACTGGAGAGTGTTCTTTACCATAGATCACAATTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGATGAAACTGGAGAGTGTTCTTTACCATAGATCACAATTTATT  100

seq1  TCTTCGGCTTTGTAAATACCAGTTTCTAGAAAATGGTAGGAAGTTGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGGCTTTGTAAATACCAGTTTCTAGAAAATGGTAGGAAGTTGGAAG  150

seq1  CTCTCTTCTCACTTGGTGCCACTCCCAGCAAGGAGCGCTGTGACTAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTCACTTGGTGCCACTCCCAGCAAGGAGCGCTGTGACTAAAAT  200

seq1  GCTAAAAAACCTGCAAGAAAAGACAGCTTTAAGAAACCAGTGTTGGTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAAACCTGCAAGAAAAGACAGCTTTAAGAAACCAGTGTTGGTAAC  250

seq1  AATATAACAGAGGACTCCTTTGAAAACATTTGTTTCTGGTTTTATTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACAGAGGACTCCTTTGAAAACATTTGTTTCTGGTTTTATTTCTT  300

seq1  AGGTGTTATTTATGACTTTGGCTCAGAAAGCTATGTTAACATTTCAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTATTTATGACTTTGGCTCAGAAAGCTATGTTAACATTTCAGGGT  350

seq1  GGGTCAACAATACGTAATCGTGCCTGAATTACTCAAAGCCATGGGAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAACAATACGTAATCGTGCCTGAATTACTCAAAGCCATGGGAAGAT  400

seq1  TTAGCAGGAAACCCAGATAAGAATCTTCAAAGTAGATGTAAGATAGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGGAAACCCAGATAAGAATCTTCAAAGTAGATGTAAGATAGGGGA  450

seq1  ATGATGGGGCATGATCATCGGTGATTCACAGGGCTGCAGAGATGAATCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGGCATGATCATCGGTGATTCACAGGGCTGCAGAGATGAATCGT  500

seq1  GAAACCTCCAGATCGTCGGGCAGAGCTCATCACGTCTGTTATGCTCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTCCAGATCGTCGGGCAGAGCTCATCACGTCTGTTATGCTCATAG  550

seq1  CTCCTGGGATGGCTCTCTCAGTAGGAAAAGGATCCAGGGTCATTCCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGATGGCTCTCTCAGTAGGAAAAGGATCCAGGGTCATTCCTGTG  600

seq1  TGCGGGGCAAATGCACTAACATTGAAAGCCCTTCAAGTGGACCGATGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGGCAAATGCACTAACATTGAAAGCCCTTCAAGTGGACCGATGGGT  650

seq1  AAACGTCTTAGGAAACGAAGCCCAGGAAGCAAGTAGTACCCTGGACCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCTTAGGAAACGAAGCCCAGGAAGCAAGTAGTACCCTGGACCTTG  700

seq1  GATTCCTGACATCACTTGTAGGTTGCACAGTGTACATCTCTAGAAAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGACATCACTTGTAGGTTGCACAGTGTACATCTCTAGAAAATAC  750

seq1  TGGACTGGATAAGTTCAGGAATCCCTTTGTATTCCACTACTCTCTGGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGGATAAGTTCAGGAATCCCTTTGTATTCCACTACTCTCTGGTCC  800

seq1  TGTAAACTTAATCTGAGACTACAGAAGGGGTAAACCATTCCAGTCTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACTTAATCTGAGACTACAGAAGGGGTAAACCATTCCAGTCTCTCT  850

seq1  GCTGGAGAGAAGGAAGGTGCTTAACTCACTAGCACTCCAAGTATATAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAGAAGGAAGGTGCTTAACTCACTAGCACTCCAAGTATATAAGC  900

seq1  TGCAGGTGTACAATGGGCCTCTCTATGGGGTCTATGAGGTCATTGCTCAC  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCA-GTGTACAATGGGCCTCTCTATGGGGTCTATGAGGTCATTGCTCAC  949

seq1  GCTGCCCATAGCAATCAGGTAGAATTTC-TCAAGGCTTGAAAGAAGACAC  999
      ||||||||||||||||| |||||||||| |||||||||||||| ||||||
seq2  GCTGCCCATAGCAATCA-GTAGAATTTCTTCAAGGCTTGAAAG-AGACAC  997

seq1  CTAATGTCTACCTTTGGCCTTAATGTCAT-ATGTATATATGTGCACACAT  1048
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTAATGTCTACCTTTGGCCTTAATGTCATAATGTATATATGTGCACACAT  1047

seq1  ACATACTCGTACACGTACGTGTACACACACACACACACACACACACACAC  1098
      ||||||||||||||||||||||||| ||||||||||  ||||| ||||||
seq2  ACATACTCGTACACGTACGTGTACAAACACACACACTAACACAAACACAC  1097

seq1  ACACACACACAG-CTTATAGACCGTTATCC-ATATCCTTGCTG-CTTACT  1145
      |||||| ||||| |||||||| |||||||| |||||  ||||| ||||||
seq2  ACACACCCACAGCCTTATAGA-CGTTATCCAATATC--TGCTGCCTTACT  1144

seq1  GAGTCCTTTATTCCTTTGCTGCTGTCTTAGGAGGTGTGTG  1185
      |||| | ||||||||||||||| ||  ||||||| |||||
seq2  GAGTTCATTATTCCTTTGCTGCCGTTCTAGGAGG-GTGTG  1183

seq1: chr1_52269860_52271038
seq2: B6Ng01-219K04.g_65_1213 (reverse)

seq1  AGCACACAACACATGTAAACATAAAG-AGTATGTTTAAAGAAGGACACTG  49
      ||||||||| ||| || ||||||||| |||       ||||||   ||||
seq2  AGCACACAA-ACA-GT-AACATAAAGTAGT-------AAGAAG---ACTG  37

seq1  CAAAAAAAAAAATGGCAAAAGCTTAAAGTACTCAACAGAGTAACAGTTTT  99
      |  ||||||||||||| ||||  ||||||||||||   ||| ||||||| 
seq2  C--AAAAAAAAATGGCCAAAGGCTAAAGTACTCAAACAAGT-ACAGTTT-  83

seq1  ATTAGATGTTAAATGATTTTTCTTACTACTACTTCAGAGTAAA-CTAGCC  148
        |||||| |||||||||||   ||||||||| |||||||||| ||||||
seq2  -ATAGATG-TAAATGATTTT--CTACTACTAC-TCAGAGTAAACCTAGCC  128

seq1  CTTTTAAGAATTACTCCTTAAAAATTAACATGTTTAACTATAATAAAAAA  198
      ||||| |||| |||||||  |||||||||||| |||||||||||||||||
seq2  CTTTT-AGAA-TACTCCT--AAAATTAACATG-TTAACTATAATAAAAAA  173

seq1  CCATGCTTTTTATTATAACTTAAGAATAATTCATTAGATAATTAAAATCA  248
      ||||||||||   |||||| ||||||||||||| ||||||||||||||||
seq2  CCATGCTTTT--ATATAAC-TAAGAATAATTCA-TAGATAATTAAAATCA  219

seq1  CAAACAG-ATAAAAAAGTTTTAAATTATACCTTCAAAAGAGAAGTCTAAA  297
      | ||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  C-AACAGAATAAAAAAG-TTTAAATTATACCTTCAAAAGAGAAGTCTAAA  267

seq1  AGTAAGTTTACCTGACTTGTAGTCTTAGTAAGTTTTAGGGTACTGCCAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTTACCTGACTTGTAGTCTTAGTAAGTTTTAGGGTACTGCCAGA  317

seq1  CACAGTGGAACATGCCCGTGATCAAACAGATAGAGGCATGAAGATATAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGAACATGCCCGTGATCAAACAGATAGAGGCATGAAGATATAGT  367

seq1  CTGAGGATAGCCTGGGGTACAAAGTAAGTTTTAGGCAAGCCCAGCTAAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATAGCCTGGGGTACAAAGTAAGTTTTAGGCAAGCCCAGCTAAAG  417

seq1  AAACTGGCTCAAAATTGGGGAAAAAAAAAAAAAAGGAATGAAATTATATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGCTCAAAATTGGGGAAAAAAAAAAAAAAGGAATGAAATTATATC  467

seq1  ATTAATATAAATTCATCGAGCTATATATACCATGTACCAGTTGTACATTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATAAATTCATCGAGCTATATATACCATGTACCAGTTGTACATTT  517

seq1  TTACGTTAAGCTATATTTTCATTTTAAAAAGTAACTTAAAGGAAGGATTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTTAAGCTATATTTTCATTTTAAAAAGTAACTTAAAGGAAGGATTA  567

seq1  TATTTTTAAACTATTTTTTTCCAGTGGGAAAAAAAAGAAATGGCATAATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAACTATTTTTTTCCAGTGGGAAAAAAAAGAAATGGCATAATT  617

seq1  CTTCTCATATCCAAACTAGAGCTTGACAATAAACCCTTAATGTCTGAGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATATCCAAACTAGAGCTTGACAATAAACCCTTAATGTCTGAGTT  667

seq1  CCAGCTAAATTAAAATACACTTGGCATTAACTCACGCAGACATTTCTGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAAATTAAAATACACTTGGCATTAACTCACGCAGACATTTCTGCA  717

seq1  TATGTCCCGCTGCATGTGTGTGCACACCTGTGAGGAGGCTACCATCAATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCCGCTGCATGTGTGTGCACACCTGTGAGGAGGCTACCATCAATT  767

seq1  TTCCTCCTCCGTACTCCAGTTTATGTTCTCCAGGCAGGGCACCTGCTGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTCCGTACTCCAGTTTATGTTCTCCAGGCAGGGCACCTGCTGAA  817

seq1  CATGGAGCTGGTCTACTCCCCAGTTTGTTAGCCAGCTTTCAGAGAAAGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGCTGGTCTACTCCCCAGTTTGTTAGCCAGCTTTCAGAGAAAGAA  867

seq1  CCTCTGCCTTCCTCCCAACTGCTACAATTATAGGAAGCCACTATATTTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTTCCTCCCAACTGCTACAATTATAGGAAGCCACTATATTTGT  917

seq1  CTAAGATTCTGTGCCAGAGACTCCAAGTCCAGGCTTCACTTTTGTAAACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTCTGTGCCAGAGACTCCAAGTCCAGGCTTCACTTTTGTAAACC  967

seq1  AAGCACTTTATCCACTAAGCCATCTTCCCCTAAGCCCAAAAGTACCATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTTATCCACTAAGCCATCTTCCCCTAAGCCCAAAAGTACCATTC  1017

seq1  TTGAAAATAACATTCTCACAGTTTAGCACTTTTCCAAAGGCATTTCTTAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATAACATTCTCACAGTTTAGCACTTTTCCAAAGGCATTTCTTAA  1067

seq1  TTTAGATTTAAAAAAAAAATTCAAATCATCTCTTTATAGTTCTCCCTCAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTTAAAAAAAAAATTCAAATCATCTCTTTATAGTTCTCCCTCAT  1117

seq1  TATAAAACTTTTTAATAATTATGCAAGAATTC  1179
      ||||||||||||||||||||||||||||||||
seq2  TATAAAACTTTTTAATAATTATGCAAGAATTC  1149