BAC Information

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BAC

Clone NameB6Ng01-219M20
Chromosome1 (Build37)
Map Location 153,775,770 - 153,877,090
singlet/doubletdoublet
Overlap gene1700025G04Rik
Upstream geneEG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3
Downstream geneLOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219M20.bB6Ng01-219M20.g
ACCGA035534GA035535
length1,1651,081
definitionB6Ng01-219M20.b B6Ng01-219M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,875,952 - 153,877,090)(153,775,770 - 153,776,822)
sequence
gaattccatttcttttgaaaagacagtaaggagttttgtgtgtttgaaag
ttagcccttctagttactgaaggtgagactgtcagtaaccgaaggatagg
gatggttcaaattctccaccttttacctacttcactgtggtatggtcggg
acaaatagatatggttaacctgttgtcaggataggtataaatagaatcag
taattacagtcacagatccttagatgtaagtttaatggtgtgtccaacgg
cagccaggtaacagcagccagcaacataacccactagccacaagcttatg
gaagaggcagggtccgttaatgggacctggaactgtgatttgatttccct
aaatttcttagaagacgtggatcccgagcaggcgcaatactggtctcaga
cacctgcattcttaggaggaaatggggaacagtacatattttctcttaca
taaagaatcttaaataaattatgtccttgcttcaaaacagtctagatttt
gaaagtgggaattaaagtttaatggggtgtgatgggtcgtgggtatctaa
taatagatctgttctaacatccacagtttgagtttctccaagttctattg
ttaaagatgctgaagatatctgtaggtttccccccaactttatgacctgg
catgtgttaagggtacctgggccccctccggacttttggtgtcattgccg
tgttgtactgtgtcagatgagatctcaggtaattgtggtacagggtgtct
ttcaagttacttttcttttgtagaaactggccctctgtagagacccccta
acccctttattaataagggtcaaatcttgttcagagagagtaaatactgt
gagcctaaccggaattaagctgtgtttatggacacagtagtgtttccatt
tgctgtttaacctcaccacagtcaagttcttaagaccctgggctcttacc
agaagtttggaaagagccctaagaatgtctgggtttgccacttgctgggt
gagcttgttctagcaacttgagcttaataaataaaccaagtttccagcag
caatttctgcacctttcagtggtgcacatgagttccttaagcagggcaga
cttcgagttcctgggtaaggccctggcaatctgggtgttcctgtgaataa
atacctctcggtctt
gaattccactctttacgctgcctgtggccctggctcacagctggtgtggc
atttagggtggggtggaaggaaatatgaattgagattctcccatagtcct
ccaggcttggaggagaaatgaaagactctggattttattctattaaccat
aatggagactctgaagagttttaagcagggaagtcatgactaggtatgag
tcccagaagcatctcagcagagcaggagaagcagaggcagaaatcctggt
gtggccttttgatggattgtacaggatgagcgtcatcgtagagaggatgc
tagattgtggtgtagtgagaagactgtgtagtgtgggcgtggatagacag
agtggaggcaaaggagtggagccaggagacactgagaggacagtgtgctt
agaggatgctccacaccggttaggttaggactccttcagatacaagagcc
cggaggtccatttgattcccttcaagcccggaagggatggattggattac
ctaaggggaatacatctgatcgcacctggttttcatgcaggtagtaaagt
ctgtctgtctgactttgcttatcattgtgatgtaatttattccctgaccc
tgccagctccagatttaaccctgccaactccatggcccataaggcaaatc
tctcctgtggtcccagttacaagaacagtaggaaaacactgagattggcc
agtgaaggagccagctgaccacttctgtggtggtggtgtccctagcagga
cagaggactcctgtagggaaaaagaaaacgcaatggccatcactgcattt
tgctattcggcctagggtctctctgtattacaaattctttttctactaaa
atggcacgtggtatggttttttgtaaagtaacctattaaaaatgatcatc
ttttgctaaggccgccccatacagtgagtggtgttgcttccacttggtga
aaaggactggagtttaaaacttgggcggaacaaagaattctctttttctt
ttctcttttctctcaataacttcttcaattactttgaagataataacata
aaagtggcacacatttagtgaaggaaccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_153875952_153877090
seq2: B6Ng01-219M20.b_45_1209 (reverse)

seq1  AAGACCGAGAGGGATTATTT--CAGGAACA--CAGAT--GCAGGGCCTTA  44
      |||||||||||| |||  ||  ||||||||  |||||   ||||||||||
seq2  AAGACCGAGAGGTATTTATTCACAGGAACACCCAGATTGCCAGGGCCTTA  50

seq1  CCCAGG-ACTCGGAGTCTG-CCTGC-TAAGAACCTCATGTGCA-CACTG-  89
      |||||| ||||| |||||| ||||| |||| | |||||||||| ||||| 
seq2  CCCAGGAACTCGAAGTCTGCCCTGCTTAAGGAACTCATGTGCACCACTGA  100

seq1  AAGGTGCAGAAA-TGCTGCTGG-AACTTGGTTTATTTA-TAAGCTC-AGT  135
      |||||||||||| ||||||||| ||||||||||||||| ||||||| |||
seq2  AAGGTGCAGAAATTGCTGCTGGAAACTTGGTTTATTTATTAAGCTCAAGT  150

seq1  TGCTAGA--CAGCTCACCCAGCAAGTGGCAAA-CCAGACA-TCTTA-GGC  180
      |||||||   |||||||||||||||||||||| ||||||| ||||| |||
seq2  TGCTAGAACAAGCTCACCCAGCAAGTGGCAAACCCAGACATTCTTAGGGC  200

seq1  TCTTTCCAAACTTCTGGT-AGAG-CCAGGGTC-TAAGAACTTGACTGTGG  227
      |||||||||||||||||| |||| |||||||| |||||||||||||||||
seq2  TCTTTCCAAACTTCTGGTAAGAGCCCAGGGTCTTAAGAACTTGACTGTGG  250

seq1  TGAGGTTAAACAGC-AATGG-AACACTACTGTGTCCATAAACACAGCTTA  275
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  TGAGGTTAAACAGCAAATGGAAACACTACTGTGTCCATAAACACAGCTTA  300

seq1  ATTCCGGTTAGGCTCACAGTATTTACTCTCTCTGAAC-AGATTTGACCCT  324
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTCCGGTTAGGCTCACAGTATTTACTCTCTCTGAACAAGATTTGACCCT  350

seq1  TATTAATAAAGGGGTTAGGGGGTCTCTACAGAGGGCCAGTTTCTACAAAA  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATAAAGGGGTTAGGGGGTCTCTACAGAGGGCCAGTTTCTACAAAA  400

seq1  GAAAAGTAACTTGAAAGACACCCTGTACCACAATTACCTGAGATCTCATC  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAACTTGAAAGACACCCTGTACCACAATTACCTGAGATCTCATC  450

seq1  TGACCCAGTACAACACGGCAATGACACCAAAAGTCCGGAGGGGGCCCAGG  474
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGTACAACACGGCAATGACACCAAAAGTCCGGAGGGGGCCCAGG  500

seq1  TACCCTTAACACATGCCAGGTCATAAAGTTGGGGGGAAACCTACAGATAT  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTAACACATGCCAGGTCATAAAGTTGGGGGGAAACCTACAGATAT  550

seq1  CTTCAGCATCTTTAACAATAGAACTTGGAGAAACTCAAACTGTGGATGTT  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCATCTTTAACAATAGAACTTGGAGAAACTCAAACTGTGGATGTT  600

seq1  AGAACAGATCTATTATTAGATACCCACGACCCATCACACCCCATTAAACT  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGATCTATTATTAGATACCCACGACCCATCACACCCCATTAAACT  650

seq1  TTAATTCCCACTTTCAAAATCTAGACTGTTTTGAAGCAAGGACATAATTT  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCCACTTTCAAAATCTAGACTGTTTTGAAGCAAGGACATAATTT  700

seq1  ATTTAAGATTCTTTATGTAAGAGAAAATATGTACTGTTCCCCATTTCCTC  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGATTCTTTATGTAAGAGAAAATATGTACTGTTCCCCATTTCCTC  750

seq1  CTAAGAATGCAGGTGTCTGAGACCAGTATTGCGCCTGCTCGGGATCCACG  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATGCAGGTGTCTGAGACCAGTATTGCGCCTGCTCGGGATCCACG  800

seq1  TCTTCTAAGAAATTTAGGGAAATCAAATCACAGTTCCAGGTCCCATTAAC  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAAGAAATTTAGGGAAATCAAATCACAGTTCCAGGTCCCATTAAC  850

seq1  GGACCCTGCCTCTTCCATAAGCTTGTGGCTAGTGGGTTATGTTGCTGGCT  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTGCCTCTTCCATAAGCTTGTGGCTAGTGGGTTATGTTGCTGGCT  900

seq1  GCTGTTACCTGGCTGCCGTTGGACACACCATTAAACTTACATCTAAGGAT  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTACCTGGCTGCCGTTGGACACACCATTAAACTTACATCTAAGGAT  950

seq1  CTGTGACTGTAATTACTGATTCTATTTATACCTATCCTGACAACAGGTTA  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTGTAATTACTGATTCTATTTATACCTATCCTGACAACAGGTTA  1000

seq1  ACCATATCTATTTGTCCCGACCATACCACAGTGAAGTAGGTAAAAGGTGG  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATCTATTTGTCCCGACCATACCACAGTGAAGTAGGTAAAAGGTGG  1050

seq1  AGAATTTGAACCATCCCTATCCTTCGGTTACTGACAGTCTCACCTTCAGT  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGAACCATCCCTATCCTTCGGTTACTGACAGTCTCACCTTCAGT  1100

seq1  AACTAGAAGGGCTAACTTTCAAACACACAAAACTCCTTACTGTCTTTTCA  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAGGGCTAACTTTCAAACACACAAAACTCCTTACTGTCTTTTCA  1150

seq1  AAAGAAATGGAATTC  1139
      |||||||||||||||
seq2  AAAGAAATGGAATTC  1165

seq1: chr1_153775770_153776822
seq2: B6Ng01-219M20.g_67_1147

seq1  GAATTCCACTCTTTACGCTGCCTGTGGCCCTGGCTCACAGCTGGTGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCTTTACGCTGCCTGTGGCCCTGGCTCACAGCTGGTGTGGC  50

seq1  ATTTAGGGTGGGGTGGAAGGAAATATGAATTGAGATTCTCCCATAGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGGTGGGGTGGAAGGAAATATGAATTGAGATTCTCCCATAGTCCT  100

seq1  CCAGGCTTGGAGGAGAAATGAAAGACTCTGGATTTTATTCTATTAACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTGGAGGAGAAATGAAAGACTCTGGATTTTATTCTATTAACCAT  150

seq1  AATGGAGACTCTGAAGAGTTTTAAGCAGGGAAGTCATGACTAGGTATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGACTCTGAAGAGTTTTAAGCAGGGAAGTCATGACTAGGTATGAG  200

seq1  TCCCAGAAGCATCTCAGCAGAGCAGGAGAAGCAGAGGCAGAAATCCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAGCATCTCAGCAGAGCAGGAGAAGCAGAGGCAGAAATCCTGGT  250

seq1  GTGGCCTTTTGATGGATTGTACAGGATGAGCGTCATCGTAGAGAGGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTTTGATGGATTGTACAGGATGAGCGTCATCGTAGAGAGGATGC  300

seq1  TAGATTGTGGTGTAGTGAGAAGACTGTGTAGTGTGGGCGTGGATAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGTGGTGTAGTGAGAAGACTGTGTAGTGTGGGCGTGGATAGACAG  350

seq1  AGTGGAGGCAAAGGAGTGGAGCCAGGAGACACTGAGAGGACAGTGTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGGCAAAGGAGTGGAGCCAGGAGACACTGAGAGGACAGTGTGCTT  400

seq1  AGAGGATGCTCCACACCGGTTAGGTTAGGACTCCTTCAGATACAAGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATGCTCCACACCGGTTAGGTTAGGACTCCTTCAGATACAAGAGCC  450

seq1  CGGAGGTCCATTTGATTCCCTTCAAGCCCGGAAGGGATGGATTGGATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGTCCATTTGATTCCCTTCAAGCCCGGAAGGGATGGATTGGATTAC  500

seq1  CTAAGGGGAATACATCTGATCGCACCTGG-TTTCATGCAGGTAGTAAAGT  549
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTAAGGGGAATACATCTGATCGCACCTGGTTTTCATGCAGGTAGTAAAGT  550

seq1  CTGTCTGTCTGACTTTGCTTATCATTGTGATGTAATTTATTCCCTGACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTGACTTTGCTTATCATTGTGATGTAATTTATTCCCTGACCC  600

seq1  TGCCAGCTCCAGATTTAACCCTGCCAACTCCATGGCCCATAAGGCAAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCTCCAGATTTAACCCTGCCAACTCCATGGCCCATAAGGCAAATC  650

seq1  TCTCCTGTGGTCCCAGTTACAAGAACAGTAGGAAAACACTGAGATTGGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTGGTCCCAGTTACAAGAACAGTAGGAAAACACTGAGATTGGCC  700

seq1  AGTGAAGGAGCCAGCTGACCACTTCTGTGGTGGTGGTGT-CCTAGCAGGA  748
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTGAAGGAGCCAGCTGACCACTTCTGTGGTGGTGGTGTCCCTAGCAGGA  750

seq1  CAGAGGACT-CTGTAGGG-AAAAGAAAACGCAATGGCCATCACTGCA-TT  795
      ||||||||| |||||||| |||||||||||||||||||||||||||| ||
seq2  CAGAGGACTCCTGTAGGGAAAAAGAAAACGCAATGGCCATCACTGCATTT  800

seq1  TGCTATTCGGCCTAGGGTCTCTCTGTATTACAAAT--CTTTTCTACTAAA  843
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  TGCTATTCGGCCTAGGGTCTCTCTGTATTACAAATTCTTTTTCTACTAAA  850

seq1  AT-GCACGT-GTATG--TTTATGTAAAGTATACTATT-AAAATGATCATC  888
      || |||||| |||||  ||| |||||||||  ||||| ||||||||||||
seq2  ATGGCACGTGGTATGGTTTTTTGTAAAGTAACCTATTAAAAATGATCATC  900

seq1  -TATGC-AAGGCAG-CCCATACAGTGAGT-GTG-TGCTTCCACAT-GTG-  931
       | ||| ||||| | |||||||||||||| ||| ||||||||| | ||| 
seq2  TTTTGCTAAGGCCGCCCCATACAGTGAGTGGTGTTGCTTCCACTTGGTGA  950

seq1  AGAGGACT-GAGTTTAGAACT--GGC-GAACAAAGATTTCTCTTTTTCTT  977
      | |||||| ||||||| ||||  ||| ||||||||| |||||||||||||
seq2  AAAGGACTGGAGTTTAAAACTTGGGCGGAACAAAGAATTCTCTTTTTCTT  1000

seq1  TTC-CTTTTCTCCCAGTAAC-TCTTCAATTTACTTTG-AGATATAAACAT  1024
      ||| |||||||| || |||| ||||||| |||||||| |||||  |||||
seq2  TTCTCTTTTCTCTCAATAACTTCTTCAA-TTACTTTGAAGATAATAACAT  1049

seq1  AAAAGT-GCACACATTT-GTG-AGGCACCATT  1053
      |||||| |||||||||| ||| ||| ||||||
seq2  AAAAGTGGCACACATTTAGTGAAGGAACCATT  1081