BAC Information

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BAC

Clone NameB6Ng01-220E23
Chromosome1 (Build37)1 (Build37)
Map Location 73,495,802 - 73,496,63988,013,304 - 88,014,297
singlet/doubletsingletsinglet
Overlap geneLOC672208
Upstream geneMarch4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc
Downstream geneLOC100043291, Tns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220E23.bB6Ng01-220E23.g
ACCGA035901GA035902
length1,0031,001
definitionB6Ng01-220E23.b B6Ng01-220E23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,495,802 - 73,496,639)(88,013,304 - 88,014,297)
sequence
gaattccgcatccctcatccttgtggcttatttctttgctacatcaccac
tgcagagagaattcccattccctggctgtttctcattgcttacagcttcc
tagaaagtatgtgaggagaaaagacttggatattttggggtggggagtgg
tggattacttgattgattctgagacagtgctggtggctagaaaaattcct
cattcccagtggcctttcctagaaccaaggtcctttttctgaggagtcct
atctccttggtacagttagacgtaccatccagttctgtaggtccatgtgc
ccccgtgcctttatcatatctttctcagtcctggtagcttgtttcatact
catctttttgaggataggaaccccatatgactttgacgatgacatagttc
taatgtctgtaacaaaatatgggcttagtaaatcctcgttggagaaattc
ttacagataaattactatggaggaggaaggggtctctacttgtttcaccg
ttgaatctgccttttaccatttttttaaaaatagaatatagattattttt
caaggaagctttgagatctctgggctaatataattgatagaagattgtca
cttttaccaactgcacacaggagggatggagacaaggaacagagccccta
aaacaaggatttccttacatatggggccagaggagccagagcaagtctgc
actcactccatcagtttctcccctgcaacctcaggtgtcacctccaatta
agctgatggaatacgtgccagatctaaattgtccatgtccttggggtccc
agtagtgttgatgaacagcttccattgtgaagtgccctcttggcattttc
tgtttgcaatataaaatcttgccttcctctccccctgccgttacccacct
cgctccaacccacctcacagcaccttggctggtgcttcacaaaccactag
gatgacattcaatccatcgtccagcaggaatagcagagaaacttcttctt
cta
gaattcatgtacccttgaaggccagaggaagatgtgggatctcctggagc
cagaattaaaagacagttttgttgttgcccggcggggggtggcacatgcc
tttaatcccagcgcttggaggcagaggcaggcaggctcaattccagcacc
cccacacagttaacaattgatctgtaatttcagatccaaaaaactcaatg
ccccctttttggcttctgcaagcattgcatgtgggtggtatacaaactta
cacgaaggcaaaatataaaataatcttttgaaagttgtttgatccctttc
tgtatagtaaaatataaaactctagaaggggaacaatgttctcttctaac
acaaaaacatatacattcgttgagttaaaagaaaggtccattaaaggtgc
ccaatgtgctattcaaggcaagggacagagattgtacacagtatgctgtg
aagcaggattatgttacatccgggcccagaaagtaaaagtatttgttgcc
tgatgacctgagtttgattcccacaacctgttaatggagggagagaacta
attacacatgcacacgcacacagacacgcacacgcacacactgctagaac
atttttaggggctagagagctcagtggttaagggcatgtacacaaccatc
tgtaactatagcttctgagagatctgacacctatggcttccacaggcaaa
catccacaaacaggcatacacatatacatataactaaaaataatttaaaa
aatgagttgattttgggtgtttttagacagctatcttcatgtctatggta
ctaattaaacagtaagaataaccatgtcatgacagagcagttcacaatgg
ttagccgatgtattatcaggttgttcttacgagtcctcagggaagtaagt
ggggggagtactgtgaagccctgaagcaccgcagacttagggatcacact
gcatcctccactttcagcttgtttcacacacttttctgcaaggctaaaag
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_73495802_73496639
seq2: B6Ng01-220E23.b_194_1033 (reverse)

seq1  AGTTTCTCTGCTATTCCTGCTGGGACGATGGATTGAATGTCATCCTAGTG  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTTTCTCTGCTATTCCTGCT-GGACGATGGATTGAATGTCATCCTAGTG  49

seq1  GTTTGTGGAGCACCAG-CAAGGTGCTGTGAGGTGGGTTGGAGCGAGGTGG  99
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  GTTTGTGAAGCACCAGCCAAGGTGCTGTGAGGTGGGTTGGAGCGAGGTGG  99

seq1  GTAACGGCAGGGGGAGAGG-AGGCAAGA-TTTATATTGCAAACAGAAAAT  147
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  GTAACGGCAGGGGGAGAGGAAGGCAAGATTTTATATTGCAAACAGAAAAT  149

seq1  GCCAAGAGGGCACTTCACAATGGAAGCTGTTCATCAACACTACTGGGACC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAGGGCACTTCACAATGGAAGCTGTTCATCAACACTACTGGGACC  199

seq1  CCAAGGACATGGACAATTTAGATCTGGCACGTATTCCATCAGCTTAATTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGACATGGACAATTTAGATCTGGCACGTATTCCATCAGCTTAATTG  249

seq1  GAGGTGACACCTGAGGTTGCAGGGGAGAAACTGATGGAGTGAGTGCAGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACACCTGAGGTTGCAGGGGAGAAACTGATGGAGTGAGTGCAGAC  299

seq1  TTGCTCTGGCTCCTCTGGCCCCATATGTAAGGAAATCCTTGTTTTAGGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGGCTCCTCTGGCCCCATATGTAAGGAAATCCTTGTTTTAGGGG  349

seq1  CTCTGTTCCTTGTCTCCATCCCTCCTGTGTGCAGTTGGTAAAAGTGACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCCTTGTCTCCATCCCTCCTGTGTGCAGTTGGTAAAAGTGACAA  399

seq1  TCTTCTATCAATTATATTAGCCCAGAGATCTCAAAGCTTCCTTGAAAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATCAATTATATTAGCCCAGAGATCTCAAAGCTTCCTTGAAAAAT  449

seq1  AATCTATATTCTATTTTTAAAAAAATGGTAAAAGGCAGATTCAACGGTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATATTCTATTTTTAAAAAAATGGTAAAAGGCAGATTCAACGGTGA  499

seq1  AACAAGTAGAGACCCCTTCCTCCTCCATAGTAATTTATCTGTAAGAATTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTAGAGACCCCTTCCTCCTCCATAGTAATTTATCTGTAAGAATTT  549

seq1  CTCCAACGAGGATTTACTAAGCCCATATTTTGTTACAGACATTAGAACTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACGAGGATTTACTAAGCCCATATTTTGTTACAGACATTAGAACTA  599

seq1  TGTCATCGTCAAAGTCATATGGGGTTCCTATCCTCAAAAAGATGAGTATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCGTCAAAGTCATATGGGGTTCCTATCCTCAAAAAGATGAGTATG  649

seq1  AAACAAGCTACCAGGACTGAGAAAGATATGATAAAGGCACGGGGGCACAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGCTACCAGGACTGAGAAAGATATGATAAAGGCACGGGGGCACAT  699

seq1  GGACCTACAGAACTGGATGGTACGTCTAACTGTACCAAGGAGATAGGACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTACAGAACTGGATGGTACGTCTAACTGTACCAAGGAGATAGGACT  749

seq1  CCTCAGAAAAAGGACCTTGGTTCTAGGAAAGGCCACTGGGAATGAGGAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAAAAGGACCTTGGTTCTAGGAAAGGCCACTGGGAATGAGGAAT  799

seq1  TTTTCTAGCCACCAGCACTGTCTCAGAATCAATCAAGTAAT  838
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGCCACCAGCACTGTCTCAGAATCAATCAAGTAAT  840

seq1: chr1_88013304_88014297
seq2: B6Ng01-220E23.g_63_1063 (reverse)

seq1  GCTTTTCG-CTTGCAGAAAAGTGTGTGAAACAA-CTGAAAGTGG-GGGTG  47
      |||||| | |||||||||||||||||||||||| |||||||||| || ||
seq2  GCTTTTAGCCTTGCAGAAAAGTGTGTGAAACAAGCTGAAAGTGGAGGATG  50

seq1  CAGTGTGATCCCTAAGACTGCGGTGC-TCAGGGCTTCACAGTACT-CCCC  95
      |||||||||||||||| ||||||||| |||||||||||||||||| ||||
seq2  CAGTGTGATCCCTAAGTCTGCGGTGCTTCAGGGCTTCACAGTACTCCCCC  100

seq1  CACTTACTTCCCTGAGGACTCCTAAGAACAACCTGAT-ATACA-CGGCTA  143
      ||||||||||||||||||||| ||||||||||||||| ||||| ||||||
seq2  CACTTACTTCCCTGAGGACTCGTAAGAACAACCTGATAATACATCGGCTA  150

seq1  ACCATTGTGAACTGCTCTGTCATTACATGGTTATTCTTACTGTTTAATTA  193
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACCATTGTGAACTGCTCTGTCATGACATGGTTATTCTTACTGTTTAATTA  200

seq1  GTACCATAGACATGAAGATAGCTGTCTAAAAACACCCAAAATCAACTCAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATAGACATGAAGATAGCTGTCTAAAAACACCCAAAATCAACTCAT  250

seq1  TTTTTAAATTATTTTTAGTTATATGTATATGTGTATGCCTGTTTGTGGAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATTATTTTTAGTTATATGTATATGTGTATGCCTGTTTGTGGAT  300

seq1  GTTTGCCTGTGGAAGCCATAGGTGTCAGATCTCTCAGAAGCTATAGTTAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCTGTGGAAGCCATAGGTGTCAGATCTCTCAGAAGCTATAGTTAC  350

seq1  AGATGGTTGTGTACATGCCCTTAACCACTGAGCTCTCTAGCCCCTAAAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGTGTACATGCCCTTAACCACTGAGCTCTCTAGCCCCTAAAAA  400

seq1  TGTTCTAGCAGTGTGTGCGTGTGCGTGTCTGTGTGCGTGTGCATGTGTAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGCAGTGTGTGCGTGTGCGTGTCTGTGTGCGTGTGCATGTGTAA  450

seq1  TTAGTTCTCTCCCTCCATTAACAGGTTGTGGGAATCAAACTCAGGTCATC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTCTCCCTCCATTAACAGGTTGTGGGAATCAAACTCAGGTCATC  500

seq1  AGGCAACAAATACTTTTACCTACTGGGCCCGGATGTAACATAATCCTGCT  543
      ||||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  AGGCAACAAATACTTTTACTTTCTGGGCCCGGATGTAACATAATCCTGCT  550

seq1  TCACAGCATACTGTGTACAATCACTGTACCTTGCCTTGAATAGCACATTG  593
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  TCACAGCATACTGTGTACAATCTCTGTCCCTTGCCTTGAATAGCACATTG  600

seq1  GGCACCTTTAATGGACCTTTCTTTTAACTCAACGAATGTATATGTTTTTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTTTAATGGACCTTTCTTTTAACTCAACGAATGTATATGTTTTTG  650

seq1  TGCTAGAAGAGAACATTGTTCCCCTTCTAGAGTTTTATATTTTACTATAC  693
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAAGAGAACATTGTTCCCCTTCTAGAGTTTTATATTTTACTATAC  700

seq1  AGAAAGGGATCAAACAACTTTCAAAAGATTATTTTATATTTTGCCTTCGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGATCAAACAACTTTCAAAAGATTATTTTATATTTTGCCTTCGT  750

seq1  GTAAGTCTGTATACCACCCACATGCAATGCTTGCAGAAGCCAAAAAGGGG  793
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTTGTATACCACCCACATGCAATGCTTGCAGAAGCCAAAAAGGGG  800

seq1  GCATTGAGTTTCTTGGATCTGAAATTACAGATCAATTGTTAACTGTGTGG  843
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCATTGAGTTTTTTGGATCTGAAATTACAGATCAATTGTTAACTGTGTGG  850

seq1  GGGTGCTGGAATTGAGCCTGCCTGCCTCTGCCTCCAAGCGCTGGGATTAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGGAATTGAGCCTGCCTGCCTCTGCCTCCAAGCGCTGGGATTAA  900

seq1  AGGCATGTGCCACCCCCCACCGGGCAACAACAAAACTGTCTTTTAATTCT  943
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGCATGTGCCACCCCCCGCCGGGCAACAACAAAACTGTCTTTTAATTCT  950

seq1  GGCTCCAGGAGATCCTACATCTTCCTCTGGCCTTCAAGGGTACCTGAATT  993
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  GGCTCCAGGAGATCCCACATCTTCCTCTGGCCTTCAAGGGTACATGAATT  1000

seq1  C  994
      |
seq2  C  1001