BAC Information

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BAC

Clone NameB6Ng01-220G19
Chromosome1 (Build37)
Map Location 106,451,183 - 106,452,285
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383546
Downstream geneLOC100041134, Cdh20, Rnf152, LOC100041985, Pign
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220G19.bB6Ng01-220G19.g
ACCGA035984GA035985
length1,2241,121
definitionB6Ng01-220G19.b B6Ng01-220G19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttccatttttcagatcacttgttagaattgtaaaaattatttt
caaagagccgttaagtggccatttagagattttagtgagtattggagcca
aatatagcctgtgaattcagaagcctttatgactgggagtcatcccagta
gggagtctgatagtagagagaaggcatttccttttgagtgagagtagaag
ctatcaattatctctatcaacttcctgaggataaattaataaccagaaat
ggacagccaggccagatcaccaggtcatcattactttaaactagaggctg
agctctgggccagtgcctgagtggtgggagaatgggttagctaggcctag
gcttttccagcatggagaaagaaaccgttttgaggagtgagaaagatctc
ataaggggaagatgtcctagaatgaacagtcaggactgtgaatacctgtg
tccccaaggacaccagagggtaactatgagctcaagagccttccctacct
cccctgcagccaagggtcatttaaggtgtctaggggggagaagcttgcca
atttacctgagtttggatggagttatagcaagccaatggctagaaagtac
acgtgacagtgggaaatatgaacctgcaagtttgtaaatctgagtcatgg
gaaatgtgaatctgtgagtttctaaatctgagtcatggcaccaagtgatt
tgttttataaagccaaggatatattttatagggtatagtcaggtatggta
ggaggagtaggcccatgctgaggcatctctcccaccaaggtaccagccat
atgatggatctagtatagaatatagtttatttgagggcatgggaaatggg
atttaagaaaggaatacagcagagaaaaagagggggacatagaagaatca
cacacacacacacacacacacacacacacacacacacgagagagagagag
agagacagagagacagagagacagagagatccagaagagagagagagacg
gagagagagagagaagactgagagagagagagtctgaatagtgagtgacc
gagtgagagaggactgagtgaaggatctctgcttgaactatgggtgtaaa
aaaagagggaaggggaagggaaaaaaggtgttcaaaaacacgtgagaaga
tggctctaaagaagcctaaagagaaaggctctaaaaaagaggccccaaaa
agaggcctctctttttttcactac
gaattctagacataaatacagtgtggacaatccccaaggactgtgggtga
gagaatctgagcacatacaatgtaatgctgtgtgaccttgctccttaatt
taaaactattggttgaataaagatgctgacaggctatagctgggcagaaa
agatgtatgtgaagttttgattcccaggcttggcatcaagaggagagact
acaagattgaagaagaaggaagagaggatggagagaaaagatgacatggg
gtagggaatcatgaaaacatagctatgaaggatggccagttggagtaaga
gtggcccaggcagagcatggcaagttataacttggagttattgagaggac
aaactagactagagggtagatatctgcccagctctgttgtattaaaggtt
tataataaacataaaacttgtgtattttttaatctaggaacagaatgatc
aaaagtaggctagaaacccccagctaagattaagtaattaatacaacagc
tattggatgatttatttttccaagttttcctttaaaagatcattttgaga
attctttgcaataataaccttgaaatacatcgacatacttctctgataat
gatatgcctactaaacagaatttaagtcaatcacatgaataactgtaaag
tttatttttaagcaaagaatcacaatgacatcctgtaaaatgactaaggt
atatatatatattaaagtatataccttaatatatacatatatatatatat
atatatatatatatatcacattttacaatataaacgatttggtagtactt
cattgcaaaaaataggattttataaaaaggataaaaaattacaacagaat
atacttttcttcataaagaaaaacattgtttttctctaaatagggaaaaa
aaatgtcctatgtactgataaaacaaaaataaaaaatatttgtaaatttc
acaaagctgatatattgttagctacttagctgaaattggtcagatgtgga
aatgaaaatgcctaaattaagagcactaacaagggacagcaacagagaat
tgtgacccacctccaaatattcagggtcctaaggtcctaaacgcattcta
ggctactccctcaacatcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_106451183_106452285
seq2: B6Ng01-220G19.g_67_1187

seq1  GAATTCTAGACATAAATACAGTGTGGACAATCCCCAAGGACTGTGGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACATAAATACAGTGTGGACAATCCCCAAGGACTGTGGGTGA  50

seq1  GAGAATCTGAGCACATACAATGTAATGCTGTGTGACCTTGCTCCTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTGAGCACATACAATGTAATGCTGTGTGACCTTGCTCCTTAATT  100

seq1  TAAAACTATTGGTTGAATAAAGATGCTGACAGGCTATAGCTGGGCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTATTGGTTGAATAAAGATGCTGACAGGCTATAGCTGGGCAGAAA  150

seq1  AGATGTATGTGAAGTTTTGATTCCCAGGCTTGGCATCAAGAGGAGAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATGTGAAGTTTTGATTCCCAGGCTTGGCATCAAGAGGAGAGACT  200

seq1  ACAAGATTGAAGAAGAAGGAAGAGAGGATGGAGAGAAAAGATGACATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATTGAAGAAGAAGGAAGAGAGGATGGAGAGAAAAGATGACATGGG  250

seq1  GTAGGGAATCATGAAAACATAGCTATGAAGGATGGCCAGTTGGAGTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAATCATGAAAACATAGCTATGAAGGATGGCCAGTTGGAGTAAGA  300

seq1  GTGGCCCAGGCAGAGCATGGCAAGTTATAACTTGGAGTTATTGAGAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCAGGCAGAGCATGGCAAGTTATAACTTGGAGTTATTGAGAGGAC  350

seq1  AAACTAGACTAGAGGGTAGATATCTGCCCAGCTCTGTTGTATTAAAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGACTAGAGGGTAGATATCTGCCCAGCTCTGTTGTATTAAAGGTT  400

seq1  TATAATAAACATAAAACTTGTGTATTTTTTAATCTAGGAACAGAATGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAACATAAAACTTGTGTATTTTTTAATCTAGGAACAGAATGATC  450

seq1  AAAAGTAGGCTAGAAACCCCCAGCTAAGATTAAGTAATTAATACAACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGGCTAGAAACCCCCAGCTAAGATTAAGTAATTAATACAACAGC  500

seq1  TATTGGATGATTTATTTTTCCAAGTTTTCCTTTAAAAGATCATTTTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATGATTTATTTTTCCAAGTTTTCCTTTAAAAGATCATTTTGAGA  550

seq1  ATTCTTTGCAATAATAACCTTGAAATACATCGACATACTTCTCTGATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGCAATAATAACCTTGAAATACATCGACATACTTCTCTGATAAT  600

seq1  GATATGCCTACTAAACAGAATTTAAGTCAATCACATGAATAACTGTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCCTACTAAACAGAATTTAAGTCAATCACATGAATAACTGTAAAG  650

seq1  TTTATTTTTAAGCAAAGAATCACAATGACATCCTGTAAAATGACTAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTAAGCAAAGAATCACAATGACATCCTGTAAAATGACTAAGGT  700

seq1  ATATATATATATTAAAGTATATACCTTAATATATACATATATATATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATTAAAGTATATACCTTAATATATACATATATATATATAT  750

seq1  ATATATATATATATATCACATTTTACAATATAAACGATTTGGTAGTAC-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATATATATATATATATCACATTTTACAATATAAACGATTTGGTAGTACTT  800

seq1  CATTGCAAAAAATAGGATTTTATAAAAAGGATAAAAAATTACAACAGAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAAAAAATAGGATTTTATAAAAAGGATAAAAAATTACAACAGAAT  850

seq1  ATACTTT--CTCATAA--GAAAACATTGTTTTTCTCT-AATA-GGAAAAA  893
      |||||||   ||||||   |||||||||||||||||| |||| |||||||
seq2  ATACTTTTCTTCATAAAGAAAAACATTGTTTTTCTCTAAATAGGGAAAAA  900

seq1  AAATGTCCTATGTACTGATAAAACAAAA--TAAAAATATTTGTAAA-TTC  940
      ||||||||||||||||||||||||||||   ||||||||||||||| |||
seq2  AAATGTCCTATGTACTGATAAAACAAAAATAAAAAATATTTGTAAATTTC  950

seq1  ACAAAGCTGATATATTGTTAGCTACTTAGCTGAAATTGGTCAGATGTGG-  989
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACAAAGCTGATATATTGTTAGCTACTTAGCTGAAATTGGTCAGATGTGGA  1000

seq1  AATGAAATTGCTAAAATTAAGAGCACTAACAAGGGACAGCAACAGAGAAT  1039
      ||||||| |||  |||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATGCCTAAATTAAGAGCACTAACAAGGGACAGCAACAGAGAAT  1050

seq1  TGTGACC--ACTCC-AATATTCAAGGTCCT-AGGTCCT-AACGCA-TCTA  1083
      |||||||   |||| |||||||| |||||| ||||||| |||||| ||||
seq2  TGTGACCCACCTCCAAATATTCAGGGTCCTAAGGTCCTAAACGCATTCTA  1100

seq1  GGCTACT-CCTCCACATCTTG  1103
      ||||||| |||| ||||||||
seq2  GGCTACTCCCTCAACATCTTG  1121