BAC Information

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BAC

Clone NameB6Ng01-220G20
Chromosome1 (Build37)
Map Location 162,066,494 - 162,237,970
singlet/doubletdoublet
Overlap geneTnn, Mrps14, Cacybp, Rabgap1l
Upstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr, 4930523C07Rik, 4930562F07Rik
Downstream geneGpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220G20.bB6Ng01-220G20.g
ACCGA035986GA035987
length1,1881,041
definitionB6Ng01-220G20.b B6Ng01-220G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,066,494 - 162,067,689)(162,236,934 - 162,237,970)
sequence
gaattccatctcccgatgtccgtgataatctgatctctcttatctattgt
cagtgtagactcagtgttatgcacatacgtgttccttcccaggattttat
aaatgtattcttggctctctgcgtcccactcacatagtttcaactactat
ttagctttgttgctaatagtcaaaggaacttgtccaagaacctggtcagg
gttttgttttgttttattttgttcctgtctagcagctgtaacagctcaat
aaacccttttatttggagacccttcagttttaagagttttgttttaacaa
gttccattggttgacttgttaagtggaaaataactgaactacattccctt
cctgcgtacgcatacactgctcttaaatcctggtgctctttctcagcttg
caagaaacaaaaaatttggagaaaacaaatttttaatctcctaaattaac
tcatggtcttccctgacctcagaaacgataggatctttttcttttttatt
ttagtagtgcacataccctagatttatttgagatccagtgaagtgtctca
tcctgatgttaggatataattgacaataaaaacacttctcagatgctaat
agtctagttgggataatatacttgaaaggttaactaccaattcaatggca
cacgcaattaattgttgtaagaactcagaggctgtgacatttaatgtgac
tataaaaggctttcgtcaagaagtagaagttgtgttaccaggattagtcg
tggtgtaggccaatgacggtggatcttccctcctgatcatgctttgggct
ctacatcctgtttcccctgggtaacattaggaagggaagcttcacaatta
acctccttggggtttaaaataacacatgaaaagatggaggtctcggggct
tccctgaatcctattaagggaaaagcataacacactcttctggtcaaaag
aatggaagctgaggttcctctttccctggtgttctaggtggagatgactt
tcttatggactggaaagatgagagcatgctatgtttctcccctaacgtta
atcactggaccccatcaatctcctgaccagtttaaccatagaactgatca
gccaaccacatgataggtggtggaggaaatcaggctctctggctactctg
ccttgctttgagattcctgacctaaaaagaaaaccttt
gaattctataaattctgagaaataataatggcttatcatctttttatttt
ctaagaataaggaaaaataagcactgattgctttaagaaaaattgctctt
cttccaagaagaatcttcatgtgaataataatgaagagatgaactgtttg
aaactgagttaccgaggacgtaacataaatcaacttttgtttgggaggaa
tttcatataggctatttctagtaaggaacccttcttctttctattttctg
aagtgtaaagaagattcccggcctggtggtctcatgcgctgggttgagaa
tgcaggtgtttttggtgtacacttcctgcagagataagagaccttgtggt
ttccactgggggtgaattactaggcaagtctgtgatagcagctgcctttt
cttttttcctcctctcttacccgctgggttttgacacccagcccctggct
ctcaagtgggtgtgtgcactgagctgccctaagaccgtttccctggatag
tctggtctggagctggggcagcagcagctgctgtgaagaagccaactggc
aagatgatggaagaaatctccattatggtagcctatgacgcccatgtttt
cagccagctgcatgatgaagacttcctcactagcctggtggccaccagca
agcccaggtccatggtaggtggcaccttgcacactacactggccttctct
ttctgtaacataatgggcaccttccatagcaagagaggggtaggttcttg
tgaggtaaacggaagcactgctgctgactgcactacaggccacagcgagg
tctgcaggctttcagtgggtttgtttaataaacaaacactgttctatgtc
ggtaatatgctttaaatgcttctgtagtgaggttgagaagagttttagaa
tgccaaataccactttgctttgtgtctgtgtgtgactgttataaaactag
accacgggttcataacattccgtcaggctcttttgagtagagcatttctt
ttcaatgggccatgtcactttttgtaaattgaattaaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162066494_162067689
seq2: B6Ng01-220G20.b_47_1234

seq1  GAATTCCATCTCCCGATGTCCGTGATAATCTGATCTCTCTTATCTATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCCCGATGTCCGTGATAATCTGATCTCTCTTATCTATTGT  50

seq1  CAGTGTAGACTCAGTGTTATGCACATACGTGTTCCTTCCCAGGATTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAGACTCAGTGTTATGCACATACGTGTTCCTTCCCAGGATTTTAT  100

seq1  AAATGTATTCTTGGCTCTCTGCGTCCCACTCACATAGTTTCAACTACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTCTTGGCTCTCTGCGTCCCACTCACATAGTTTCAACTACTAT  150

seq1  TTAGCTTTGTTGCTAATAGTCAAAGGAACTTGTCCAAGAACCTGGTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTGTTGCTAATAGTCAAAGGAACTTGTCCAAGAACCTGGTCAGG  200

seq1  GTTTTGTTTTGTTTTATTTTGTTCCTGTCTAGCAGCTGTAACAGCTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTATTTTGTTCCTGTCTAGCAGCTGTAACAGCTCAAT  250

seq1  AAACCCTTTTATTTGGAGACCCTTCAGTTTTAAGAGTTTTGTTTTAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTTTTATTTGGAGACCCTTCAGTTTTAAGAGTTTTGTTTTAACAA  300

seq1  GTTCCATTGGTTGACTTGTTAAGTGGAAAATAACTGAACTACATTCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTGGTTGACTTGTTAAGTGGAAAATAACTGAACTACATTCCCTT  350

seq1  CCTGCGTACGCATACACTGCTCTTAAATCCTGGTGCTCTTTCTCAGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGTACGCATACACTGCTCTTAAATCCTGGTGCTCTTTCTCAGCTTG  400

seq1  CAAGAAACAAAAAATTTGGAGAAAACAAATTTTTAATCTCCTAAATTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACAAAAAATTTGGAGAAAACAAATTTTTAATCTCCTAAATTAAC  450

seq1  TCATGGTCTTCCCTGACCTCAGAAACGATAGGATCTTTTTCTTTTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTCTTCCCTGACCTCAGAAACGATAGGATCTTTTTCTTTTTTATT  500

seq1  TTAGTAGTGCACATACCCTAGATTTATTTGAGATCCAGTGAAGTGTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGTGCACATACCCTAGATTTATTTGAGATCCAGTGAAGTGTCTCA  550

seq1  TCCTGATGTTAGGATATAATTGACAATAAAAACACTTCTCAGATGCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGTTAGGATATAATTGACAATAAAAACACTTCTCAGATGCTAAT  600

seq1  AGTCTAGTTGGGATAATATACTTGAAAGGTTAACTACCAATTCAATGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGTTGGGATAATATACTTGAAAGGTTAACTACCAATTCAATGGCA  650

seq1  CACGCAATTAATTGTTGTAAGAACTCAGAGGCTGTGACATTTAATGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAATTAATTGTTGTAAGAACTCAGAGGCTGTGACATTTAATGTGAC  700

seq1  TATAAAAGGCTTTCGTCAAGAAGTAGAAGTTGTGTTACCAGGATTAGTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGGCTTTCGTCAAGAAGTAGAAGTTGTGTTACCAGGATTAGTCG  750

seq1  TGGTGTAGGCCAATGACGGTGGATCTTCCCTCCTGATCATGCTTTGGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAGGCCAATGACGGTGGATCTTCCCTCCTGATCATGCTTTGGGCT  800

seq1  CTACATCCTGTTTCCCCTGGGTAACATTAGGAAGGGAAGCTTCACAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCCTGTTTCCCCTGGGTAACATTAGGAAGGGAAGCTTCACAATTA  850

seq1  ACCTCCTTGGGGTTTAAAATAACACATGAAAAGATGGAGGTCTCGGGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTTGGGGTTTAAAATAACACATGAAAAGATGGAGGTCTCGGGGCT  900

seq1  TCCCTGAATCCTATTAAGGG-AAAGCATAACACACTCTTCTGGTCAAAAG  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCCCTGAATCCTATTAAGGGAAAAGCATAACACACTCTTCTGGTCAAAAG  950

seq1  AATGGAAGCTGAGGTTCCTCTTTCCCTGGTTGTTCTAGGTGGAGATTGAC  999
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  AATGGAAGCTGAGGTTCCTCTTTCCCTGG-TGTTCTAGGTGGAGA-TGAC  998

seq1  TTTCTTATGGACTGGAAAGATGAGAGCATGCTATTGTTTCTCCCCTAAAC  1049
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  TTTCTTATGGACTGGAAAGATGAGAGCATGCTA-TGTTTCTCCCCT-AAC  1046

seq1  GTTAATCCACTGGACCCCATCAATCTCCTGACCAGTTTACCCATAGGAAA  1099
      |||||| |||||||||||||||||||||||||||||||| ||||||   |
seq2  GTTAAT-CACTGGACCCCATCAATCTCCTGACCAGTTTAACCATAG---A  1092

seq1  CCTGATTCAGCCAAACACATGATAAGGTGGT-GAGAGAATCAGGCTCT--  1146
       |||| |||||||| |||||||| ||||||| |||  |||||||||||  
seq2  ACTGA-TCAGCCAACCACATGAT-AGGTGGTGGAGGAAATCAGGCTCTCT  1140

seq1  -GCTAAATCTCTGCC-TGCTTTTTGAGTTCAGACTAAAAAAAGAAAAACT  1194
       ||||   ||||||| ||||||  || | | |||   |||||||||| ||
seq2  GGCTA---CTCTGCCTTGCTTTGAGATTCCTGAC-CTAAAAAGAAAACCT  1186

seq1  TT  1196
      ||
seq2  TT  1188

seq1: chr1_162236934_162237970
seq2: B6Ng01-220G20.g_68_1108 (reverse)

seq1  -AATTTGATTCAATTTAC-AAAAGTGACATGGCCCATTG-AAAGAAATGC  47
       | ||| ||||||||||| |||||||||||||||||||| ||||||||||
seq2  AATTTTAATTCAATTTACAAAAAGTGACATGGCCCATTGAAAAGAAATGC  50

seq1  TCTACTTCAAAGAGCCTGAACGGAATG-TATGAACCCGT-GTCTAGTTTT  95
      ||||||  |||||||||| |||||||| ||||||||||| ||||||||||
seq2  TCTACTCAAAAGAGCCTG-ACGGAATGTTATGAACCCGTGGTCTAGTTTT  99

seq1  ATAACAGTCACACACAGACACAAAGCAAAGTGGTATTTGGCATTCTAAAA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGTCACACACAGACACAAAGCAAAGTGGTATTTGGCATTCTAAAA  149

seq1  CTCTTCTCAACCTCACTACAGAAGCATTTAAAGCATATTACCGACATAGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCAACCTCACTACAGAAGCATTTAAAGCATATTACCGACATAGA  199

seq1  ACAGTGTTTGTTTATTAAACAAACCCACTGAAAGCCTGCAGACCTCGCTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTTGTTTATTAAACAAACCCACTGAAAGCCTGCAGACCTCGCTG  249

seq1  TGGCCTGTAGTGCAGTCAGCAGCAGTGCTTCCGTTTACCTCACAAGAACC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGTAGTGCAGTCAGCAGCAGTGCTTCCGTTTACCTCACAAGAACC  299

seq1  TACCCCTCTCTTGCTATGGAAGGTGCCCATTATGTTACAGAAAGAGAAGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTCTCTTGCTATGGAAGGTGCCCATTATGTTACAGAAAGAGAAGG  349

seq1  CCAGTGTAGTGTGCAAGGTGCCACCTACCATGGACCTGGGCTTGCTGGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTAGTGTGCAAGGTGCCACCTACCATGGACCTGGGCTTGCTGGTG  399

seq1  GCCACCAGGCTAGTGAGGAAGTCTTCATCATGCAGCTGGCTGAAAACATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAGGCTAGTGAGGAAGTCTTCATCATGCAGCTGGCTGAAAACATG  449

seq1  GGCGTCATAGGCTACCATAATGGAGATTTCTTCCATCATCTTGCCAGTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTCATAGGCTACCATAATGGAGATTTCTTCCATCATCTTGCCAGTTG  499

seq1  GCTTCTTCACAGCAGCTGCTGCTGCCCCAGCTCCAGACCAGACTATCCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCACAGCAGCTGCTGCTGCCCCAGCTCCAGACCAGACTATCCAG  549

seq1  GGAAACGGTCTTAGGGCAGCTCAGTGCACACACCCACTTGAGAGCCAGGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACGGTCTTAGGGCAGCTCAGTGCACACACCCACTTGAGAGCCAGGG  599

seq1  GCTGGGTGTCAAAACCCAGCGGGTAAGAGAGGAGGAAAAAAGAAAAGGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTGTCAAAACCCAGCGGGTAAGAGAGGAGGAAAAAAGAAAAGGCA  649

seq1  GCTGCTATCACAGACTTGCCTAGTAATTCACCCCCAGTGGAAACCACAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATCACAGACTTGCCTAGTAATTCACCCCCAGTGGAAACCACAAG  699

seq1  GTCTCTTATCTCTGCAGGAAGTGTACACCAAAAACACCTGCATTCTCAAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTATCTCTGCAGGAAGTGTACACCAAAAACACCTGCATTCTCAAC  749

seq1  CCAGCGCATGAGACCACCAGGCCGGGAATCTTCTTTACACTTCAGAAAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGCATGAGACCACCAGGCCGGGAATCTTCTTTACACTTCAGAAAAT  799

seq1  AGAAAGAAGAAGGGTTCCTTACTAGAAATAGCCTATATGAAATTCCTCCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAGAAGGGTTCCTTACTAGAAATAGCCTATATGAAATTCCTCCC  849

seq1  AAACAAAAGTTGATTTATGTTACGTCCTCGGTAACTCAGTTTCAAACAGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAGTTGATTTATGTTACGTCCTCGGTAACTCAGTTTCAAACAGT  899

seq1  TCATCTCTTCATTATTATTCACATGAAGATTCTTCTTGGAAGAAGAGCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTTCATTATTATTCACATGAAGATTCTTCTTGGAAGAAGAGCAA  949

seq1  TTTTTCTTAAAGCAATCAGTGCTTATTTTTCCTTATTCTTAGAAAATAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTAAAGCAATCAGTGCTTATTTTTCCTTATTCTTAGAAAATAAA  999

seq1  AAGATGATAAGCCATTATTATTTCTCAGAATTTATAGAATTC  1037
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATAAGCCATTATTATTTCTCAGAATTTATAGAATTC  1041