BAC Information

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BAC

Clone NameB6Ng01-220J01
Chromosome1 (Build37)
Map Location 67,225,444 - 67,368,248
singlet/doubletdoublet
Overlap geneCps1
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220J01.bB6Ng01-220J01.g
ACCGA036091GA036092
length1,095758
definitionB6Ng01-220J01.b B6Ng01-220J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,367,151 - 67,368,248)(67,225,444 - 67,226,201)
sequence
gaattctatcacatcattatcaaatagatcatatatattaaaagttcagg
attaccataaaaatattttaacacatcttttgtttgagattgggaggcct
tttaacctacaaattgaatcctggtataatacaactaaatagaaagctcc
tatgatgacctactagtatgttgctgttaatatattggtagaacataata
attgtttctaatattatttctaaactgaggtattcagattcatcataaga
tttcctagagttggaaaacctgtgttatcagattaaaaatattgtttgta
tatgtgtacatgtgtattatacatttatggtttttattatgaaaatgtgg
atatgaattttgctagaattccagagaagatctgtacttaagaaatttat
acatgatttaatcagtatgagaaaatccttacaatcataggtgaataagc
tgatattttactatttattctgaaaatttctaaggtttcctaagcagaga
accctatagttctgaacagcaaaaaaagctaagttatgctcttatgctct
tagaatttgtgcttttcactaaaacataactgaaatccacactcatcatt
tcagaagacgctaaggatgtgatgtgggctagaactataaacttaagttc
agtccactaagtaaagacaacacttcaaacaaacaaacaaagaacaggag
cactgcatggtcctctggtggcataaacatgagcattttatgttatagga
accaggatgctgtctcatgcttgcctacacttctctgctactctgcagta
tatttggcccatatgttgtctgcccacctccagcaagcttatgactcttg
catctctaaacaccagcgtacaactggtttgaaattacagtgaaatctat
gcagtggctctgattaatcaagcttctgcgtcttatttatttatttatta
catttcaaatgttatcccctttcctagtttcccctccaaaaaaactcact
atcctctggccctgcttcacaatcacacactcctgctcctggccctggca
gtcccctacacatggggtatagacctttccaagaaacagggcctc
gaattcttatttcaggatgactgggtcaccacctcttttgatttggggag
aatgcaggcattagtttttatttggagaacatttcaccagcctcaaatgt
gtttggggtcataatggacttcattccagtgggagccagacagagtagtt
acagtgtgaggagttgatgtctcaggagtggcaggcttgctttacaatgg
aagcaggcctgactgtaggttcttcgtcctctcagggaaatggctaccag
attctgggcccttgttcattttacatcatcagatgcaatctttatttaat
ctgtagaaagcatgaataacttattttctatgtaccttctattgttaatg
cctggcagcttttagtctcttagggactaagaccaatgtagattttgtag
acaagaccgtgattttgtgaagagttacataagagtaatacaaagttaaa
aagcaaacatggctttgagtgttttcataaagtgttattctagtcaagtg
aactgtgaaccatgctatagctcaaagcttacaatcatggactctcttac
agtagaaataagtaaagttttaagaaaactctgtgagttgaatataacat
cagagttactggttatttgcacttctcttctgagtttaaagagataaaat
atttttctaatatagttttgaaatagatattatatgtctattattgttca
tatttgtataaatacaaataataacaatgtgcatgttttggggttgggag
gtttggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_67367151_67368248
seq2: B6Ng01-220J01.b_45_1139 (reverse)

seq1  GAGGCCCTTGGTTCTGTGAAGGTTCTATACCCCA-GTGTAGGGGACTGCC  49
      ||||||| || ||||  ||| | ||||||||||| |||||||||||||||
seq2  GAGGCCC-TGTTTCTTGGAAAGGTCTATACCCCATGTGTAGGGGACTGCC  49

seq1  AGGGCCAGGAAGCAGGAGTGTGTGGATTTGTG-AGCAGGGCCAGAGGATA  98
      ||||||||| ||||||||||||||   ||||| |||||||||||||||||
seq2  AGGGCCAGG-AGCAGGAGTGTGTG--ATTGTGAAGCAGGGCCAGAGGATA  96

seq1  GTGAGTTTTTTTGGAGGGGAAACTAGGAAAGGGGATAACATTTGAAATGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTTTTTGGAGGGGAAACTAGGAAAGGGGATAACATTTGAAATGT  146

seq1  AAATAAATAAATAAATAAGACGCAGAAGCTTGATTAATCAGAGCCACTGC  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AATAAATAAATAAATAAGACGCAGAAGCTTGATTAATCAGAGCCACTGC  195

seq1  ATAGATTTCACTGTAATTTCAAACCAGTTGTACGCTGGTGTTTAGAGATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTCACTGTAATTTCAAACCAGTTGTACGCTGGTGTTTAGAGATG  245

seq1  CAAGAGTCATAAGCTTGCTGGAGGTGGGCAGACAACATATGGGCCAAATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCATAAGCTTGCTGGAGGTGGGCAGACAACATATGGGCCAAATA  295

seq1  TACTGCAGAGTAGCAGAGAAGTGTAGGCAAGCATGAGACAGCATCCTGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCAGAGTAGCAGAGAAGTGTAGGCAAGCATGAGACAGCATCCTGGT  345

seq1  TCCTATAACATAAAATGCTCATGTTTATGCCACCAGAGGACCATGCAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAACATAAAATGCTCATGTTTATGCCACCAGAGGACCATGCAGTG  395

seq1  CTCCTGTTCTTTGTTTGTTTGTTTGAAGTGTTGTCTTTACTTAGTGGACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTCTTTGTTTGTTTGTTTGAAGTGTTGTCTTTACTTAGTGGACT  445

seq1  GAACTTAAGTTTATAGTTCTAGCCCACATCACATCCTTAGCGTCTTCTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAAGTTTATAGTTCTAGCCCACATCACATCCTTAGCGTCTTCTGA  495

seq1  AATGATGAGTGTGGATTTCAGTTATGTTTTAGTGAAAAGCACAAATTCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGAGTGTGGATTTCAGTTATGTTTTAGTGAAAAGCACAAATTCTA  545

seq1  AGAGCATAAGAGCATAACTTAGCTTTTTTTGCTGTTCAGAACTATAGGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATAAGAGCATAACTTAGCTTTTTTTGCTGTTCAGAACTATAGGGT  595

seq1  TCTCTGCTTAGGAAACCTTAGAAATTTTCAGAATAAATAGTAAAATATCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTAGGAAACCTTAGAAATTTTCAGAATAAATAGTAAAATATCA  645

seq1  GCTTATTCACCTATGATTGTAAGGATTTTCTCATACTGATTAAATCATGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTCACCTATGATTGTAAGGATTTTCTCATACTGATTAAATCATGT  695

seq1  ATAAATTTCTTAAGTACAGATCTTCTCTGGAATTCTAGCAAAATTCATAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTCTTAAGTACAGATCTTCTCTGGAATTCTAGCAAAATTCATAT  745

seq1  CCACATTTTCATAATAAAAACCATAAATGTATAATACACATGTACACATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTTCATAATAAAAACCATAAATGTATAATACACATGTACACATA  795

seq1  TACAAACAATATTTTTAATCTGATAACACAGGTTTTCCAACTCTAGGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACAATATTTTTAATCTGATAACACAGGTTTTCCAACTCTAGGAAA  845

seq1  TCTTATGATGAATCTGAATACCTCAGTTTAGAAATAATATTAGAAACAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGATGAATCTGAATACCTCAGTTTAGAAATAATATTAGAAACAAT  895

seq1  TATTATGTTCTACCAATATATTAACAGCAACATACTAGTAGGTCATCATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGTTCTACCAATATATTAACAGCAACATACTAGTAGGTCATCATA  945

seq1  GGAGCTTTCTATTTAGTTGTATTATACCAGGATTCAATTTGTAGGTTAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTTCTATTTAGTTGTATTATACCAGGATTCAATTTGTAGGTTAAA  995

seq1  AGGCCTCCCAATCTCAAACAAAAGATGTGTTAAAATATTTTTATGGTAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCCCAATCTCAAACAAAAGATGTGTTAAAATATTTTTATGGTAAT  1045

seq1  CCTGAACTTTTAATATATATGATCTATTTGATAATGATGTGATAGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTTTTAATATATATGATCTATTTGATAATGATGTGATAGAATTC  1095

seq1: chr1_67225444_67226201
seq2: B6Ng01-220J01.g_65_822

seq1  GAATTCTTATTTCAGGATGACTGGGTCACCACCTCTTTTGATTTGGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTCAGGATGACTGGGTCACCACCTCTTTTGATTTGGGGAG  50

seq1  AATGCAGGCATTAGTTTTTATTTGGAGAACATTTCACCAGCCTCAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGGCATTAGTTTTTATTTGGAGAACATTTCACCAGCCTCAAATGT  100

seq1  GTTTGGGGTCATAATGGACTTCATTCCAGTGGGAGCCAGACAGAGTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGGTCATAATGGACTTCATTCCAGTGGGAGCCAGACAGAGTAGTT  150

seq1  ACAGTGTGAGGAGTTGATGTCTCAGGAGTGGCAGGCTTGCTTTACAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTGAGGAGTTGATGTCTCAGGAGTGGCAGGCTTGCTTTACAATGG  200

seq1  AAGCAGGCCTGACTGTAGGTTCTTCGTCCTCTCAGGGAAATGGCTACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCCTGACTGTAGGTTCTTCGTCCTCTCAGGGAAATGGCTACCAG  250

seq1  ATTCTGGGCCCTTGTTCATTTTACATCATCAGATGCAATCTTTATTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGCCCTTGTTCATTTTACATCATCAGATGCAATCTTTATTTAAT  300

seq1  CTGTAGAAAGCATGAATAACTTATTTTCTATGTACCTTCTATTGTTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAAGCATGAATAACTTATTTTCTATGTACCTTCTATTGTTAATG  350

seq1  CCTGGCAGCTTTTAGTCTCTTAGGGACTAAGACCAATGTAGATTTTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGCTTTTAGTCTCTTAGGGACTAAGACCAATGTAGATTTTGTAG  400

seq1  ACAAGACCGTGATTTTGTGAAGAGTTACATAAGAGTAATACAAAGTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACCGTGATTTTGTGAAGAGTTACATAAGAGTAATACAAAGTTAAA  450

seq1  AAGCAAACATGGCTTTGAGTGTTTTCATAAAGTGTTATTCTAGTCAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACATGGCTTTGAGTGTTTTCATAAAGTGTTATTCTAGTCAAGTG  500

seq1  AACTGTGAACCATGCTATAGCTCAAAGCTTACAATCATGGACTCTCTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAACCATGCTATAGCTCAAAGCTTACAATCATGGACTCTCTTAC  550

seq1  AGTAGAAATAAGTAAAGTTTTAAGAAAACTCTGTGAGTTGAATATAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAATAAGTAAAGTTTTAAGAAAACTCTGTGAGTTGAATATAACAT  600

seq1  CAGAGTTACTGGTTATTTGCACTTCTCTTCTGAGTTTAAAGAGATAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTACTGGTTATTTGCACTTCTCTTCTGAGTTTAAAGAGATAAAAT  650

seq1  ATTTTTCTAATATAGTTTTGAAATAGATATTATATGTCTATTATTGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTAATATAGTTTTGAAATAGATATTATATGTCTATTATTGTTCA  700

seq1  TATTTGTATAAATACAAATAATAACAATGTGCATGTTTTGGGGTTGGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATAAATACAAATAATAACAATGTGCATGTTTTGGGGTTGGGAG  750

seq1  GTTTGGTT  758
      ||||||||
seq2  GTTTGGTT  758