BAC Information

Click to search

BAC

Clone NameB6Ng01-220J17
Chromosome1 (Build37)
Map Location 116,415,148 - 116,416,321
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220J17.bB6Ng01-220J17.g
ACCGA036123GA036124
length1,178926
definitionB6Ng01-220J17.b B6Ng01-220J17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagttaaagtttcactttttagaatatgtcatctgaggcatgtgc
tagagcaatggaaacctgacacacacaggagtccgaggcagatcatggac
acagcactacagtctatgctttgttaggtgaactggattataggcttcat
tgaccaggttggctctcacatttgacacacactctccatatgtgtcaaat
gattttgtctttcccaaggcagtagtcatagatataaaatctgtctccca
tgaaaaatgtaccaaaaatgttatatctgaagtcaagcactatccactgc
agcagaaggtgagcaggctctgggcccaaggataattctctgagtttagt
gacatgtcaaataaaagataaaataaatcataaaattgtatagatttagg
tattttctttggttgtcagatatacatgaaataatgtttgctgtggctca
gtagtcgtctgaagagtaacagcctcaccttaattctcctaagagcctcg
actgtagccatggagatctgactagagtgagctgttggatttttaactta
attgttttgaaagagcagagcacttgcccagggatgatgctgactctcct
cactgagaggcaatgcacagattagggagactagcctggctttaagaggt
gctaagtcctactgaagtatctatcacttgtaggtttcggtttctttagc
acaatattaagccttctttgtaaaaaaggatcatggcctgtggtaaagct
gaagtttgtcctaagtgaattattatgtatgagacatccagcaaagcaca
gaaaggctctctaaagaagcatttattcatgcagaattgcagactgagga
cagggccaacctgtgcaaagaaagcagtgtcctctggaaatgacatgact
cctgaattcatgaattcacagcagctgctactgattgcacaagacccacc
tgggctcaagccagtcagcattccagcagagtggtcagcatgggttcatg
aaccttcacaccttactgaggaactggtggagaggtaatggtttgacgat
aaaaaagagttaccttttctgtaagctaatgaactctggaatgttgactt
ttcagggtatgcctgccccccagcctttcagctagggagtgtaccatgca
gtatacaaactgattgttagcttattaa

gaattctgggatttaatcctggtttgactagctacctgcttataagcaag
tatatatagaagtgtgaaacaattgttttaaagatagtgtaataaggtct
ataagataattgactcatattcactaagatgggttccatgggaattttgg
gttattatcctacatgactaaatataaaaggcctacgaataaccacatgc
agtattttagtttgcctcatttgttttcaattgttttaatttcaaaatgg
gtgtgattttgagttttgtggctatattattcctctgggagaaaggtaaa
tataaatttttttctggtttctggctcaaggatatgctgactttggagaa
aggtttttgtcttttcatttttagaaaagatgactagtgtctgtacatct
tctagagtaatatggatcagatattatgaagggagacaccctgaagaact
agatttctgagaatttaaaaaaaattaccttgatgatagtaaaattttgt
tttgagatgtgtgtattacaggatatacaaccttggtgagtctcattgtc
agacatgctgacctgacctgcttgcactcctggtatcttggactctcagt
tgattccattcagtccacatacatcagagattactacaatcattggtgtg
gccttcttaagtcccaccaactcctgcattttccctacccatactctcaa
cccccttcataaatatctcaatgcccatattcatcttgaagaagttatga
agagtgattgtggcagttccctgggctttggggttggagggtggttattc
tacgtttgcctttctgggcaatttaaaagtagtcataattggaacgagga
ggaaatagcttagaattgattgtgtagccatatctcatttggtagaaatc
tttatagttgttagtaagttgaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_116415148_116416321
seq2: B6Ng01-220J17.b_46_1223 (reverse)

seq1  TTAATAAGCTACCAAATCCAGTTTG--TACTGCAT-GTACACT-CCTAGC  46
      ||||||||||| |||   |||||||  |||||||| ||||||| ||||||
seq2  TTAATAAGCTAACAA--TCAGTTTGTATACTGCATGGTACACTCCCTAGC  48

seq1  TG-AAGGCTGGGGGGGCAGGCATACCCTGGAAAAGTCAACATTCCAGAGT  95
      || |||||| |||||||||||||||||| |||||||||||||||||||||
seq2  TGAAAGGCT-GGGGGGCAGGCATACCCT-GAAAAGTCAACATTCCAGAGT  96

seq1  TCA-TAGCTTTACAGAAAA-GTAACTCTTTTTATCCTTCAAACCATTACC  143
      ||| |||| |||||||||| ||||||||||||   | |||||||||||||
seq2  TCATTAGC-TTACAGAAAAGGTAACTCTTTTTTATCGTCAAACCATTACC  145

seq1  TCTCCA-CAGTTCCTCAGTAAGGTGTGAAGGTTCATGAA-CCATGCTGAC  191
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTCCACCAGTTCCTCAGTAAGGTGTGAAGGTTCATGAACCCATGCTGAC  195

seq1  CACTCTGCTGGAATGCTGACTGGCTTGAGCCCAGGTGGGTCTTGTGCAAT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGCTGGAATGCTGACTGGCTTGAGCCCAGGTGGGTCTTGTGCAAT  245

seq1  CAGTAGCAGCTGCTGTGAATTCATGAATTCAGGAGTCATGTCATTTCCAG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCAGCTGCTGTGAATTCATGAATTCAGGAGTCATGTCATTTCCAG  295

seq1  AGGACACTGCTTTCTTTGCACAGGTTGGCCCTGTCCTCAGTCTGCAATTC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACTGCTTTCTTTGCACAGGTTGGCCCTGTCCTCAGTCTGCAATTC  345

seq1  TGCATGAATAAATGCTTCTTTAGAGAGCCTTTCTGTGCTTTGCTGGATGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAATAAATGCTTCTTTAGAGAGCCTTTCTGTGCTTTGCTGGATGT  395

seq1  CTCATACATAATAATTCACTTAGGACAAACTTCAGCTTTACCACAGGCCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACATAATAATTCACTTAGGACAAACTTCAGCTTTACCACAGGCCA  445

seq1  TGATCCTTTTTTACAAAGAAGGCTTAATATTGTGCTAAAGAAACCGAAAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTTTTTACAAAGAAGGCTTAATATTGTGCTAAAGAAACCGAAAC  495

seq1  CTACAAGTGATAGATACTTCAGTAGGACTTAGCACCTCTTAAAGCCAGGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGTGATAGATACTTCAGTAGGACTTAGCACCTCTTAAAGCCAGGC  545

seq1  TAGTCTCCCTAATCTGTGCATTGCCTCTCAGTGAGGAGAGTCAGCATCAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCCCTAATCTGTGCATTGCCTCTCAGTGAGGAGAGTCAGCATCAT  595

seq1  CCCTGGGCAAGTGCTCTGCTCTTTCAAAACAATTAAGTTAAAAATCCAAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGCAAGTGCTCTGCTCTTTCAAAACAATTAAGTTAAAAATCCAAC  645

seq1  AGCTCACTCTAGTCAGATCTCCATGGCTACAGTCGAGGCTCTTAGGAGAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACTCTAGTCAGATCTCCATGGCTACAGTCGAGGCTCTTAGGAGAA  695

seq1  TTAAGGTGAGGCTGTTACTCTTCAGACGACTACTGAGCCACAGCAAACAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTGAGGCTGTTACTCTTCAGACGACTACTGAGCCACAGCAAACAT  745

seq1  TATTTCATGTATATCTGACAACCAAAGAAAATACCTAAATCTATACAATT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATGTATATCTGACAACCAAAGAAAATACCTAAATCTATACAATT  795

seq1  TTATGATTTATTTTATCTTTTATTTGACATGTCACTAAACTCAGAGAATT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATTTATTTTATCTTTTATTTGACATGTCACTAAACTCAGAGAATT  845

seq1  ATCCTTGGGCCCAGAGCCTGCTCACCTTCTGCTGCAGTGGATAGTGCTTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGGGCCCAGAGCCTGCTCACCTTCTGCTGCAGTGGATAGTGCTTG  895

seq1  ACTTCAGATATAACATTTTTGGTACATTTTTCATGGGAGACAGATTTTAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGATATAACATTTTTGGTACATTTTTCATGGGAGACAGATTTTAT  945

seq1  ATCTATGACTACTGCCTTGGGAAAGACAAAATCATTTGACACATATGGAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGACTACTGCCTTGGGAAAGACAAAATCATTTGACACATATGGAG  995

seq1  AGTGTGTGTCAAATGTGAGAGCCAACCTGGTCAATGAAGCCTATAATCCA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTCAAATGTGAGAGCCAACCTGGTCAATGAAGCCTATAATCCA  1045

seq1  GTTCACCTAACAAAGCATAGACTGTAGTGCTGTGTCCATGATCTGCCTCG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCTAACAAAGCATAGACTGTAGTGCTGTGTCCATGATCTGCCTCG  1095

seq1  GACTCCTGTGTGTGTCAGGTTTCCATTGCTCTAGCACATGCCTCAGATGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTGTGTGTGTCAGGTTTCCATTGCTCTAGCACATGCCTCAGATGA  1145

seq1  CATATTCTAAAAAGTGAAACTTTAACTGAATTC  1174
      |||||||||||||||||||||||||||||||||
seq2  CATATTCTAAAAAGTGAAACTTTAACTGAATTC  1178


| Home | SequenceCutter | Blast | Download |