BAC Information

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BAC

Clone NameB6Ng01-221B08
Chromosome1 (Build37)
Map Location 58,456,195 - 58,457,194
singlet/doubletsinglet
Overlap geneBzw1
Upstream gene1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262
Downstream geneClk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221B08.bB6Ng01-221B08.g
ACCGA036471GA036472
length8351,008
definitionB6Ng01-221B08.b B6Ng01-221B08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctatcccctttggggactgcattccttcctcctgttcttccata
agagtccccagctccatccactttgtggctgtgaatgtctgcatctgtct
gagtcagctgtttgggtggagcctctcagaggacagatatggtaggattc
tgtctgcaagcgtaacagaatatcattaatagtgtcatggattggtgctt
ggccatggggtgggtctctagttgggccagttattggttggctattccct
cagtctctgctccacccccacccacccactcacccacccacgccatgcct
gcgtctcttatagacaggatgaattttgggttgaaattttgtgggtgggt
tggagtctctatcagtccactaggttcctgcctggctacaggcttattca
ggttccatatccccagtgcttcgagtcacagctaaggtgtgacgcccatt
gattcttgggtgcctcccttatcccaggtctctgtctcgtcccagagatg
ccctccacctccccacccctgtcacttgcagattttcattcattcttatg
gccatctggccatctcttctgtcccccccatacctgatcagttttattca
gatgtatagaaaaaagaaaggatatcaagctcaagtgaaatcttcatttt
tattattataatcaaaactagcacagtttagaaatgaagtaatcactata
agagcttatttttttttctccacataaacttaaattctaaatcatttcct
ttaataaagtaaaattagagccaggcgatggtagctattgcctttaatcc
caacacttaagacagaggcccacctggtctacaga
gaattctctctctttaagaaaggccataaaccaggttggggtagcacatg
actataatcccattgaaaaattgagttaggagggtcatgaattcaaggtc
atcctaggttatatagtgtttactactgcaagcctagactactttagagc
ctgtttgagttgccaccccacccccacatactaagctagacatggtaatt
cacgcctgtaattccaacattcaggagacagaggctagatgatttgaggt
agacttgggctatttatggggagactatgtctaaaaataagatgaacaaa
aataattttttcttgtgatcactgtattaagaaaaaaaatgaacatattg
aagaaaaaaaatgaacataatgatccaggctggcctggaacttgctttgt
agcccaccttaggcttgaactttagcaacccttaagcaattcccagtgct
gtatgctctgttgccatactccacttcatggttatattttaatacttgta
agcataagggaagaatttatgtatctaaccctgaaatttggtgtttgtgt
ctagttgtatagttgtatacaaaaaaaggtgtagttgtattttgtaatat
tcctgttttttgagcaatagctagcatatagtgatggaagttactaaaaa
gtatagttttggtatgtgatgagattttacagtatagagtccattttggc
tctaggaataacttttaatcttcttctaggttttttaacaagctaatcag
cgctacaaatacctggagaaaggttttgaagatgaagtaaaaaggtaggt
ggaggagttgggataggggcatatgggcctgcacaagacccagtgttgag
tctctagcagcccagatttgacatagtataagacatttaaatagactctt
acttgaaataccatttgggggagtatagcagttatcttatcgaaatattt
gaaatttaccttgtccactctagtattgggtgaaaaaaaatggaccaatt
taaaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_58456195_58457194
seq2: B6Ng01-221B08.g_67_1074

seq1  GAATTCTCTCTCTTTAAGAAAGGCCATAAACCAGGTTGGGGTAGCACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCTTTAAGAAAGGCCATAAACCAGGTTGGGGTAGCACATG  50

seq1  ACTATAATCCCATTGAAAAATTGAGTTAGGAGGGTCATGAATTCAAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATCCCATTGAAAAATTGAGTTAGGAGGGTCATGAATTCAAGGTC  100

seq1  ATCCTAGGTTATATAGTGTTTACTACTGCAAGCCTAGACTACTTTAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGTTATATAGTGTTTACTACTGCAAGCCTAGACTACTTTAGAGC  150

seq1  CTGTTTGAGTTGCCACCCCACCCCCACATACTAAGCTAGACATGGTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGAGTTGCCACCCCACCCCCACATACTAAGCTAGACATGGTAATT  200

seq1  CACGCCTGTAATTCCAACATTCAGGAGACAGAGGCTAGATGATTTGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTGTAATTCCAACATTCAGGAGACAGAGGCTAGATGATTTGAGGT  250

seq1  AGACTTGGGCTATTTATGGGGAGACTATGTCTAAAAATAAGATGAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGGCTATTTATGGGGAGACTATGTCTAAAAATAAGATGAACAAA  300

seq1  AATAATTTTTTCTTGTGATCACTGTATTAAGAAAAAAAATGAACATATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTTCTTGTGATCACTGTATTAAGAAAAAAAATGAACATATTG  350

seq1  AAGAAAAAAAATGAACATAATGATCCAGGCTGGCCTGGAACTTGCTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAATGAACATAATGATCCAGGCTGGCCTGGAACTTGCTTTGT  400

seq1  AGCCCACCTTAGGCTTGAACTTTAGCAACCCTTAAGCAATTCCCAGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACCTTAGGCTTGAACTTTAGCAACCCTTAAGCAATTCCCAGTGCT  450

seq1  GTATGCTCTGTTGCCATACTCCACTTCATGGTTATATTTTAATACTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTCTGTTGCCATACTCCACTTCATGGTTATATTTTAATACTTGTA  500

seq1  AGCATAAGGGAAGAATTTATGTATCTAACCCTGAAATTTGGTGTTTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAGGGAAGAATTTATGTATCTAACCCTGAAATTTGGTGTTTGTGT  550

seq1  CTAGTTGTATAGTTGTATACAAAAAAAGGTGTAGTTGTATTTTGTAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGTATAGTTGTATACAAAAAAAGGTGTAGTTGTATTTTGTAATAT  600

seq1  TCCTGTTTTTTGAGCAATAGCTAGCATATAGTGATGGAAGTTACTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTTTTGAGCAATAGCTAGCATATAGTGATGGAAGTTACTAAAAA  650

seq1  GTATAGTTTTGGTATGTGATGAGATTTTACAGTATAGAGTCCATTTTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTTTTGGTATGTGATGAGATTTTACAGTATAGAGTCCATTTTGGC  700

seq1  TCTAGGAATAAC-TTTAATCTTCTTCTAGG-TTTTTAACAAGCTAATCAG  748
      |||||||||||| ||||||||||||||||| |||||||||||||||||| 
seq2  TCTAGGAATAACTTTTAATCTTCTTCTAGGTTTTTTAACAAGCTAATCA-  749

seq1  GCGCTACAAATACCTGGAGAAAGGTTTTGAAGATGAAGTTAAAAAGGTAG  798
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCGCTACAAATACCTGGAGAAAGGTTTTGAAGATGAAG-TAAAAAGGTAG  798

seq1  GTGGAGGAGTT-GGATA-GGGCATAT-GGCCTGCACAAGACCCAGTGTTG  845
      ||||||||||| ||||| |||||||| |||||||||||||||||||||||
seq2  GTGGAGGAGTTGGGATAGGGGCATATGGGCCTGCACAAGACCCAGTGTTG  848

seq1  AGTCTCTAGCAGCCCCAGATTGGACATAGTATTAGACATTTAAATAGACT  895
      |||||||||||| |||||||| |||||||||| |||||||||||||||||
seq2  AGTCTCTAGCAG-CCCAGATTTGACATAGTATAAGACATTTAAATAGACT  897

seq1  CTTAC-TGAAATACCATTT-GGGGAGTATAGCAGTTATTTTATTGAAATA  943
      ||||| ||||||||||||| |||||||||||||||||| |||| ||||||
seq2  CTTACTTGAAATACCATTTGGGGGAGTATAGCAGTTATCTTATCGAAATA  947

seq1  TTTGAAATTTACATTGT-CACT-TAGTATTGTGTTGAAAAAAAAT-GAC-  989
      |||||||||||| |||| |||| |||||||| | ||||||||||| ||| 
seq2  TTTGAAATTTACCTTGTCCACTCTAGTATTG-GGTGAAAAAAAATGGACC  996

seq1  -AATTAAAAATC  1000
       | |||||||||
seq2  AATTTAAAAATC  1008