BAC Information

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BAC

Clone NameB6Ng01-221D05
Chromosome1 (Build37)
Map Location 85,340,744 - 85,341,530
singlet/doubletsinglet
Overlap geneLOC639868
Upstream geneDner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221D05.bB6Ng01-221D05.g
ACCGA036555GA036556
length1,166790
definitionB6Ng01-221D05.b B6Ng01-221D05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctaggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gctcctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaag
gaactcgcacaatatgtactcactgataagtggatattagcccagaaact
taggatacggaagatataagatacaacttgccaaacgcatgaaattcaag
aagaacgaagaccaaagtgtggacactttaccctttcttagaaatgggaa
caaaacacctatggaacgagttacagagacaaaatttggagcttgatgaa
aggatggaccatctagtgattgccatatgcagggatccatcccataatca
gcttccaaatgctgacaccattgcatacaccagcaagattttgctgaaag
gatgcagatatagctctctcttgtgagactatgcccgggcctagcaaaca
cagaagtggatgatcacagtcagctattggatgggtcacacgggccccca
atggaggagctagagaaattacccaaggagctaaagggaactgcaaccct
atagtggaacacaatatgaactaaccagtacccggagctcttgtctttag
ctgcatatgtttcaaaagatgctagttgtcatcactgcagaagagccaat
tggactgcaacctttatatgcccagtacagggaaacaccaaggcctaaaa
gcgtagtggctgtgct
gaattccatcctttgcatgtggaggaagagaaggaccagggaaggaaagt
ggtccagcagtcaggtgatagcgcaaaccaccaagactgatgcagaagga
ccaacttctcctgagggcagagatggccctggtcacagaatggttggccc
tgtcaccttggctacttcccttctcccactcactcacccagtggtggccc
agacctcaagccacgcttgtatttgtcccttagacaatcacaggaaagta
gaaaatttccaacagcccatggactatgtagaggtgtttcttcccctctt
ttacaccatatcttcttccttctcttcctctattctttccctgatatttt
tgagatagggtctcatgtagaccaaaataaccacaaactcactatgtagc
caagggtcctgaccttcccgtcttgactttcctactatgtgccaccatac
ctgaattgtgatttttctgtgttcctatagaaccacctctcatttctcaa
actgtcaccattctccttgaagttgggaccaggaatgcatgtgttcctct
ccacatgttattctgattcttcctggttcctgtgttaacagtagtcatag
gaaaccccagcaacataccaagggaggttgtgaggaactcatttgaatac
ctttctgaatggcagaaacaaaacccactaaaactctcccatgaggacag
agtggggcaggaaactaatagaaccatcctaggctctctcaactatttta
tggttttttgtctgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85340744_85341530
seq2: B6Ng01-221D05.g_72_861 (reverse)

seq1  CACACACACACACACACACACACACACAGAC-AAAAACCAT-AAATAGTT  48
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  CACACACACACACACACACACACACACAGACAAAAAACCATAAAATAGTT  50

seq1  GAGAGAGCCTAGGATGG-TCTATTAGTTTCCTGCCCCACTCTGTCCTCAT  97
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGAGAGCCTAGGATGGTTCTATTAGTTTCCTGCCCCACTCTGTCCTCAT  100

seq1  GGGAGAGTTTTAGTGGGTTTTGTTTCTGCCATTCAGAAAGGTATTCAAAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGTTTTAGTGGGTTTTGTTTCTGCCATTCAGAAAGGTATTCAAAT  150

seq1  GAGTTCCTCACAACCTCCCTTGGTATGTTGCTGGGGTTTCCTATGACTAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTCACAACCTCCCTTGGTATGTTGCTGGGGTTTCCTATGACTAC  200

seq1  TGTTAACACAGGAACCAGGAAGAATCAGAATAACATGTGGAGAGGAACAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACACAGGAACCAGGAAGAATCAGAATAACATGTGGAGAGGAACAC  250

seq1  ATGCATTCCTGGTCCCAACTTCAAGGAGAATGGTGACAGTTTGAGAAATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCCTGGTCCCAACTTCAAGGAGAATGGTGACAGTTTGAGAAATG  300

seq1  AGAGGTGGTTCTATAGGAACACAGAAAAATCACAATTCAGGTATGGTGGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGTTCTATAGGAACACAGAAAAATCACAATTCAGGTATGGTGGC  350

seq1  ACATAGTAGGAAAGTCAAGACGGGAAGGTCAGGACCCTTGGCTACATAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTAGGAAAGTCAAGACGGGAAGGTCAGGACCCTTGGCTACATAGT  400

seq1  GAGTTTGTGGTTATTTTGGTCTACATGAGACCCTATCTCAAAAATATCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTGGTTATTTTGGTCTACATGAGACCCTATCTCAAAAATATCAG  450

seq1  GGAAAGAATAGAGGAAGAGAAGGAAGAAGATATGGTGTAAAAGAGGGGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAATAGAGGAAGAGAAGGAAGAAGATATGGTGTAAAAGAGGGGAA  500

seq1  GAAACACCTCTACATAGTCCATGGGCTGTTGGAAATTTTCTACTTTCCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACCTCTACATAGTCCATGGGCTGTTGGAAATTTTCTACTTTCCTG  550

seq1  TGATTGTCTAAGGGACAAATACAAGCGTGGCTTGAGGTCTGGGCCACCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTCTAAGGGACAAATACAAGCGTGGCTTGAGGTCTGGGCCACCAC  600

seq1  TGGGTGAGTGAGTGGGAGAAGGGAAGTAGCCAAGGTGACAGGGCCAACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAGTGAGTGGGAGAAGGGAAGTAGCCAAGGTGACAGGGCCAACCA  650

seq1  TTCTGTGACCAGGGCCATCTCTGCCCTCAGGAGAAGTTGGTCCTTCTGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGACCAGGGCCATCTCTGCCCTCAGGAGAAGTTGGTCCTTCTGCA  700

seq1  TCAGTCTTGGTGGTTTGCGCTATCACCTGACTGCTGGACCACTTTCCTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTGGTGGTTTGCGCTATCACCTGACTGCTGGACCACTTTCCTTC  750

seq1  CCTGGTCCTTCTCTTCCTCCACATGCAAAGGATGGAATTC  787
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCTTCTCTTCCTCCACATGCAAAGGATGGAATTC  790