BAC Information

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BAC

Clone NameB6Ng01-221E08
Chromosome1 (Build37)
Map Location 156,173,089 - 156,310,508
singlet/doubletdoublet
Overlap geneCacna1e
Upstream geneLamc1, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221E08.bB6Ng01-221E08.g
ACCGA036607GA036608
length6981,106
definitionB6Ng01-221E08.b B6Ng01-221E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,309,812 - 156,310,508)(156,173,089 - 156,174,189)
sequence
gaattcagctcttctaccacatatgacaggatccccaagagttccacctg
ccagcaaccagggtcagagaatggaatgaagtcaccaagcccatgatcta
catggtcagatcaggccaacaggaaaccatatttggagttatctggagac
ctttcaagtctctatcttcttgttataactttcattctcgtgtcctgtgg
gtattccccagtgactgctcactgcccacatagccgttttcacaccccag
tttctctccttcccccttgaaaattgaatgttcccctagtgaggcttcca
caaaagtgattgctttgtcagtgtgagcaaccaatggaggttgccacatt
agcatcattatctggttccccagaaaccagaagtgccttattatctcttc
taccactgccagtgaaagaagccagcccaattccccagagcagtgctact
gaccaagggacagactcccactaaatactcagagaatgctgcaaagtcca
gagtctgtctgctgcagagatctgcagctcccaccatctttgctctctac
aaacattcatgtgttgtatgtagtggctgaggaaatctctattcaatgta
catcaaatataatataaccctggcattctatctggaaacttagttgactt
gttaaaagaaaggggcgggggtagggtgttttttagtgtgggaatatc
gaattctggttagataagttttccatttttcctttttaccttcactgaag
ttgtggataaaagggctaccctcaggataatgttaaattgtttcatattg
tctcagggattatcttctgaggtcccagggaatccactagtgaagaagta
cctccctcaggtaggcataaggagcatagtagaataaatttcacaagtgg
aggagttgagaccttggtgaattacacagctaaaagcttgttttgaagat
agttctgttaagtagaatggagtgcttagggccttaaatatgcaaagttt
tttctttcttgtggcttcacacaagactgccacaaagataaaatagaagc
atccctataactaggcactgcaggcacttccctgtaaacctgctacagtg
gttatcaaacgtgaccccctttatacagaggactcaccgatgctcatcgg
agcagctgggacacataagttcagccaagtgaaaattagcagaacttaga
gtaactaccagtcacaggatagttggtatgttattttcatgccacagaaa
ccttggtaactgaaataaacctagtaaccttttatgtattaagaaacaca
aacacacacacacacacacacacacacacacacacacacatttgagaaaa
gtgaagcatttagtggataaggctataaagcaaacctatgttcatcacaa
tatgactagataagaaaagatttgaaagggggaatttctgaatcaaggtc
tatggaagcccacaggatagaaagccattagaagaatgctttgttttccc
atgtgtcttttactgggggttacctcaggttacctctgaccatgtgtcta
gaaagtagaaacccactatcagagttctgggcttcccaaatccacataga
aataacttagctatggaagaaaggactggaactttctctggtactcactc
acctccttgacttcctcatcccttttcttctctggtttcttcttcacctt
cctgccatctccctgatcttgttctgtccaaaatgctgctgctcatgctg
cctgccttcaggcttgcacaccaacagtttttcttctggctgaaccgagc
gttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_156309812_156310508
seq2: B6Ng01-221E08.b_49_746 (reverse)

seq1  GATATTCCCACACT-AAAAACACCCTACCCCCGCCCCTTTCTTTTAACAA  49
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATATTCCCACACTAAAAAACACCCTACCCCCGCCCCTTTCTTTTAACAA  50

seq1  GTCAACTAAGTTTCCAGATAGAATGCCAGGGTTATATTATATTTGATGTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTAAGTTTCCAGATAGAATGCCAGGGTTATATTATATTTGATGTA  100

seq1  CATTGAATAGAGATTTCCTCAGCCACTACATACAACACATGAATGTTTGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATAGAGATTTCCTCAGCCACTACATACAACACATGAATGTTTGT  150

seq1  AGAGAGCAAAGATGGTGGGAGCTGCAGATCTCTGCAGCAGACAGACTCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAAAGATGGTGGGAGCTGCAGATCTCTGCAGCAGACAGACTCTG  200

seq1  GACTTTGCAGCATTCTCTGAGTATTTAGTGGGAGTCTGTCCCTTGGTCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGCAGCATTCTCTGAGTATTTAGTGGGAGTCTGTCCCTTGGTCAG  250

seq1  TAGCACTGCTCTGGGGAATTGGGCTGGCTTCTTTCACTGGCAGTGGTAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGCTCTGGGGAATTGGGCTGGCTTCTTTCACTGGCAGTGGTAGA  300

seq1  AGAGATAATAAGGCACTTCTGGTTTCTGGGGAACCAGATAATGATGCTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAATAAGGCACTTCTGGTTTCTGGGGAACCAGATAATGATGCTAA  350

seq1  TGTGGCAACCTCCATTGGTTGCTCACACTGACAAAGCAATCACTTTTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAACCTCCATTGGTTGCTCACACTGACAAAGCAATCACTTTTGTG  400

seq1  GAAGCCTCACTAGGGGAACATTCAATTTTCAAGGGGGAAGGAGAGAAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTCACTAGGGGAACATTCAATTTTCAAGGGGGAAGGAGAGAAACT  450

seq1  GGGGTGTGAAAACGGCTATGTGGGCAGTGAGCAGTCACTGGGGAATACCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTGAAAACGGCTATGTGGGCAGTGAGCAGTCACTGGGGAATACCC  500

seq1  ACAGGACACGAGAATGAAAGTTATAACAAGAAGATAGAGACTTGAAAGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACACGAGAATGAAAGTTATAACAAGAAGATAGAGACTTGAAAGGT  550

seq1  CTCCAGATAACTCCAAATATGGTTTCCTGTTGGCCTGATCTGACCATGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGATAACTCCAAATATGGTTTCCTGTTGGCCTGATCTGACCATGTA  600

seq1  GATCATGGGCTTGGTGACTTCATTCCATTCTCTGACCCTGGTTGCTGGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGGGCTTGGTGACTTCATTCCATTCTCTGACCCTGGTTGCTGGCA  650

seq1  GGTGGAACTCTTGGGGATCCTGTCATATGTGGTAGAAGAGCTGAATTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAACTCTTGGGGATCCTGTCATATGTGGTAGAAGAGCTGAATTC  698

seq1: chr1_156173089_156174189
seq2: B6Ng01-221E08.g_64_1169

seq1  GAATTCTGGTTAGATAAGTTTTCCATTTTTCCTTTTTACCTTCACTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTTAGATAAGTTTTCCATTTTTCCTTTTTACCTTCACTGAAG  50

seq1  TTGTGGATAAAAGGGCTACCCTCAGGATAATGTTAAATTGTTTCATATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGATAAAAGGGCTACCCTCAGGATAATGTTAAATTGTTTCATATTG  100

seq1  TCTCAGGGATTATCTTCTGAGGTCCCAGGGAATCCACTAGTGAAGAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGGATTATCTTCTGAGGTCCCAGGGAATCCACTAGTGAAGAAGTA  150

seq1  CCTCCCTCAGGTAGGCATAAGGAGCATAGTAGAATAAATTTCACAAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCAGGTAGGCATAAGGAGCATAGTAGAATAAATTTCACAAGTGG  200

seq1  AGGAGTTGAGACCTTGGTGAATTACACAGCTAAAAGCTTGTTTTGAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGAGACCTTGGTGAATTACACAGCTAAAAGCTTGTTTTGAAGAT  250

seq1  AGTTCTGTTAAGTAGAATGGAGTGCTTAGGGCCTTAAATATGCAAAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTTAAGTAGAATGGAGTGCTTAGGGCCTTAAATATGCAAAGTTT  300

seq1  TTTCTTTCTTGTGGCTTCACACAAGACTGCCACAAAGATAAAATAGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTGTGGCTTCACACAAGACTGCCACAAAGATAAAATAGAAGC  350

seq1  ATCCCTATAACTAGGCACTGCAGGCACTTCCCTGTAAACCTGCTACAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTATAACTAGGCACTGCAGGCACTTCCCTGTAAACCTGCTACAGTG  400

seq1  GTTATCAAACGTGACCCCCTTTATACAGAGGACTCACCGATGCTCATCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAAACGTGACCCCCTTTATACAGAGGACTCACCGATGCTCATCGG  450

seq1  AGCAGCTGGGACACATAAGTTCAGCCAAGTGAAAATTAGCAGAACTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGGGACACATAAGTTCAGCCAAGTGAAAATTAGCAGAACTTAGA  500

seq1  GTAACTACCAGTCACAGGATAGTTGGTATGTTATTTTCATGCCACAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTACCAGTCACAGGATAGTTGGTATGTTATTTTCATGCCACAGAAA  550

seq1  CCTTGGTAACTGAAATAAACCTAGTAACCTTTTATGTATTAAGAAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTAACTGAAATAAACCTAGTAACCTTTTATGTATTAAGAAACACA  600

seq1  AACACACACACACACACACACACACACACACACACACACATTTGAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACACACACACACACACACACACACACACACACATTTGAGAAAA  650

seq1  GTGAAGCATTTAGTGGATAAGGCTATAAAGCAAACCTATGTTCATCACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCATTTAGTGGATAAGGCTATAAAGCAAACCTATGTTCATCACAA  700

seq1  TATGACTAGATAAGAAAAGATTTGAAAGGGGGAATTTCTGAATCAAGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTAGATAAGAAAAGATTTGAAAGGGGGAATTTCTGAATCAAGGTC  750

seq1  TATGGAAGCCCACAGGATAGAAAGCCATTAGAAGAATGCTTTGTTTTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGCCCACAGGATAGAAAGCCATTAGAAGAATGCTTTGTTTTCCC  800

seq1  ATGTGTC-TTTACTGGGGGTTACCTCAGGTTACCTCTGACCATGTGTCTA  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTTTTACTGGGGGTTACCTCAGGTTACCTCTGACCATGTGTCTA  850

seq1  GAAAGTAGAAACCCAACTATCAGAGTTCTGGGCTTCCCAAATCCACATAG  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAAGTAGAAACCC-ACTATCAGAGTTCTGGGCTTCCCAAATCCACATAG  899

seq1  -AATAACTTAGCTATGGAAGAAAGGACTGGACTTTTCTCTGGTACTCACT  948
       ||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  AAATAACTTAGCTATGGAAGAAAGGACTGGAACTTTCTCTGGTACTCACT  949

seq1  CACCTCCTTGACTTCCTCATCCCTTTTCTTCTCTGGTTTCTTCTTCACCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTTGACTTCCTCATCCCTTTTCTTCTCTGGTTTCTTCTTCACCT  999

seq1  TCCTGCCATCTCCCTGATCTTGTTCTGTCC-AAATGCTGCTGCTCCATGC  1047
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  TCCTGCCATCTCCCTGATCTTGTTCTGTCCAAAATGCTGCTGCT-CATGC  1048

seq1  GTGCCTGCCTTCAGGCTTGCACA-CAACAG-TTTTCTTCT-GCTG-ACCG  1093
       |||||||||||||||||||||| |||||| ||||||||| |||| ||||
seq2  -TGCCTGCCTTCAGGCTTGCACACCAACAGTTTTTCTTCTGGCTGAACCG  1097

seq1  -GCGTTTTC  1101
       ||||||||
seq2  AGCGTTTTC  1106