BAC Information

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BAC

Clone NameB6Ng01-221K14
Chromosome1 (Build37)
Map Location 71,677,820 - 71,799,258
singlet/doubletdoublet
Overlap geneFn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic
Downstream geneLOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221K14.bB6Ng01-221K14.g
ACCGA036892GA036893
length1,107966
definitionB6Ng01-221K14.b B6Ng01-221K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,677,820 - 71,678,925)(71,798,304 - 71,799,258)
sequence
gaattccccaagagtttaaattcgaccgagtgagttgacgtcctaagtca
gacaggttgttgtagtctaggattaataatagttcaattgagtagatttg
atttttaaaagtgcatttctcctttctgaagtagtggttttaaattctgt
cataaactttggagatggaagagggcaagtctgagaagggacgagacatc
aagggttaatagactaatatgagagactccttgctatggttttggcatct
ggatggttagaaaacgctagggtttgggggtccttttagaaaccaaatat
aaacccttccccgctcctccttctctcaatacctcattcccttctgtcta
cacaactcaagaggactacaggacaactgagttgagtcaaaagaacgatg
ttcatttagctggttttaaactctggaaataacttgaaaatgtgatttta
attttaatgacattgcaaatggataccaaaatttcaaattttctttccac
attggatgagaatagttgttagcattatggcttctaagattttcctaagc
caaaggcctaatttaatttcttctacatatcaaaacaaaaaaaccaaaaa
caatcaaaaaaccctgaatctacatgttgattcgactaactacatattgg
ctagacactaagaaaataaatgtcagcactgttcgacatggcatcagatc
tgtcgactcaaaagcagtaacaaacccagagggcaacacatcctagtccc
atcaggtcaggggtcagagtccaaggctgcggagctattactcacaggtc
tccatctgagaatgtacttggtgatgtgtgaaggctccggggcattccac
tggatggggtgggaattgggctggcttgggggtctccgtgataattacct
tggaacaggtccagttgtgcctgaaatgaaaccatgcccatctcttagct
tgtgtggccttaaagttttacaaaacatgggatgtccatccttaaagacc
tttcgccttctcggggaatgtgggcaagagtcctagttaaccctttcaca
ttgtgacatagctgagaaagccacagtctgattggacctgtcatcattgg
cctttcc
gaattcaagggctgattcttgctctgtgctctgaaaagctgagtctgtgg
cccggaaccctaggtgaggtaatgcattagggaggtctgtgccctcaaga
cctaccacctcctcctaccaccacatcctgtgagggggatgtggctgagt
cagactaagttgggaatcagcccagaacttttggaatatgaagttcaaca
tgagaaattaaaataatcttctacattcatttttactctgaatctatgtt
gattctaaatgtatgattcattcataataaagccagatcctctgattaca
tggctattgagctaccaaagggaaaaagtattatacatacactcttagca
tattctcttttatgtgttttttggcagatgtagcaaaaatataagaaatc
caattttctctccacacatatacattatataaacacgtagtgattcacac
atatataagccactgcacatatatattatgaaacatgattttaaaataat
tgatgattaagattttcaggtgatatagactcagaattgtttagagcacg
agctttgaaatccaaactgttccggagacattatttcattcttttctcct
tttgctcatttgtaaactttgagctaatatgtaaattacaaacagtcttt
ctaaaatcaaggggaatgccaacaaaattatgtagctaatgaaaaggcca
atgtggtttttgttttttatttgtttgcttttaagttgcctttccaaatt
tggcctattgtgagaatattttgtttgatataaatacaaatcagtttgaa
aggacttgggaaagatttcaaggggaaagcttgacttgctgcatgtatct
agatgacccaaatagttgatgtcattgtccaattctcattgaagacagaa
tctgtggttgagtacatgatctcatgccagcaaatcatttgttttccaag
ccctggaactaatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71677820_71678925
seq2: B6Ng01-221K14.b_42_1148

seq1  GAATTCCCCAAGAGTTTAAATTCGACCGAGTGAGTTGACGTCCTAAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAAGAGTTTAAATTCGACCGAGTGAGTTGACGTCCTAAGTCA  50

seq1  GACAGGTTGTTGTAGTCTAGGATTAATAATAGTTCAATTGAGTAGATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTTGTTGTAGTCTAGGATTAATAATAGTTCAATTGAGTAGATTTG  100

seq1  ATTTTTAAAAGTGCATTTCTCCTTTCTGAAGTAGTGGTTTTAAATTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAAGTGCATTTCTCCTTTCTGAAGTAGTGGTTTTAAATTCTGT  150

seq1  CATAAACTTTGGAGATGGAAGAGGGCAAGTCTGAGAAGGGACGAGACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACTTTGGAGATGGAAGAGGGCAAGTCTGAGAAGGGACGAGACATC  200

seq1  AAGGGTTAATAGACTAATATGAGAGACTCCTTGCTATGGTTTTGGCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTAATAGACTAATATGAGAGACTCCTTGCTATGGTTTTGGCATCT  250

seq1  GGATGGTTAGAAAACGCTAGGGTTTGGGGGTCCTTTTAGAAACCAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTTAGAAAACGCTAGGGTTTGGGGGTCCTTTTAGAAACCAAATAT  300

seq1  AAACCCTTCCCCGCTCCTCCTTCTCTCAATACCTCATTCCCTTCTGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTTCCCCGCTCCTCCTTCTCTCAATACCTCATTCCCTTCTGTCTA  350

seq1  CACAACTCAAGAGGACTACAGGACAACTGAGTTGAGTCAAAAGAACGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTCAAGAGGACTACAGGACAACTGAGTTGAGTCAAAAGAACGATG  400

seq1  TTCATTTAGCTGGTTTTAAACTCTGGAAATAACTTGAAAATGTGATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAGCTGGTTTTAAACTCTGGAAATAACTTGAAAATGTGATTTTA  450

seq1  ATTTTAATGACATTGCAAATGGATACCAAAATTTCAAATTTTCTTTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATGACATTGCAAATGGATACCAAAATTTCAAATTTTCTTTCCAC  500

seq1  ATTGGATGAGAATAGTTGTTAGCATTATGGCTTCTAAGATTTTCCTAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGAGAATAGTTGTTAGCATTATGGCTTCTAAGATTTTCCTAAGC  550

seq1  CAAAGGCCTAATTTAATTTCTTCTACATATCAAAACAAAAAAACCAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCCTAATTTAATTTCTTCTACATATCAAAACAAAAAAACCAAAAA  600

seq1  CAATCAAAAAACCCTGAATCTACATGTTGATTCGACTAACTACATATTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAAAAACCCTGAATCTACATGTTGATTCGACTAACTACATATTGG  650

seq1  CTAGACACTAAGAAAATAAATGTCAGCACTGTTCGACATGGCATCAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACACTAAGAAAATAAATGTCAGCACTGTTCGACATGGCATCAGATC  700

seq1  TGTCGACTCAAAAGCAGTAACAAACCCAGAGGGCAACACATCCTAGTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGACTCAAAAGCAGTAACAAACCCAGAGGGCAACACATCCTAGTCCC  750

seq1  ATCAGGTCAGGGGTCAGAGTCCAAGGCTGCGGAGCTATTACTCACAGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTCAGGGGTCAGAGTCCAAGGCTGCGGAGCTATTACTCACAGGTC  800

seq1  TCCATCTGAGAATGTACTTGGTGATGTGTGAAGGCTCCGGGGCATTCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTGAGAATGTACTTGGTGATGTGTGAAGGCTCCGGGGCATTCCAC  850

seq1  TGGATGGGGTGGGAATTGGGCTGGC-TGGGGGTCTCCGTGATAATTA-CT  898
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  TGGATGGGGTGGGAATTGGGCTGGCTTGGGGGTCTCCGTGATAATTACCT  900

seq1  TGG-ACAGGTCCAGTTGTGCCTGAAAATGAAAACATG-CCATCTCTTTAG  946
      ||| ||||||||||||||||||| |||||||| |||| ||||||| ||||
seq2  TGGAACAGGTCCAGTTGTGCCTG-AAATGAAACCATGCCCATCTC-TTAG  948

seq1  CTTGTGTGGTCTTAAAGTTTTACAAAACAT-GGATGTCCATCCTTAAAGA  995
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  CTTGTGTGGCCTTAAAGTTTTACAAAACATGGGATGTCCATCCTTAAAGA  998

seq1  CTTTTCG-CTTCTCGGGAAATGTGGGCAAAGAGT-CTAGTTAAACCTTCT  1043
      | ||||| ||||||||| ||||||||| |||||| |||||||| ||||  
seq2  CCTTTCGCCTTCTCGGGGAATGTGGGC-AAGAGTCCTAGTTAACCCTTTC  1047

seq1  ACATTGTGACATTAGCTGAAGAAAAAGCACAGTCTGATTTGACCTGGTAA  1093
      ||||||||||| |||||||   |||  |||||||||||| ||||| || |
seq2  ACATTGTGACA-TAGCTGA--GAAAGCCACAGTCTGATTGGACCT-GTCA  1093

seq1  TCATT-GCCTTTCC  1106
      ||||| ||||||||
seq2  TCATTGGCCTTTCC  1107

seq1: chr1_71798304_71799258
seq2: B6Ng01-221K14.g_68_1033 (reverse)

seq1  TTGATTAG-TCCAGGGC-TGGAAA--CAATGATTTGCTGGCATGAGATCA  46
      |||||||| |||||||| ||||||   |||||||||||||||||||||||
seq2  TTGATTAGTTCCAGGGCTTGGAAAACAAATGATTTGCTGGCATGAGATCA  50

seq1  TGTACTCAACCACAGGATTCTGTCTTCAATGAGAAATGGACAATGACATC  96
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  TGTACTCAACCACA-GATTCTGTCTTCAATGAGAATTGGACAATGACATC  99

seq1  AACTATTTGGTTCATCTAGATACATTGCAGCAAGTCAAGCTTTCCCCTTG  146
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  AACTATTTGGGTCATCTAGATACA-TGCAGCAAGTCAAGCTTTCCCCTTG  148

seq1  AAATCTTTCCCAAGTCCTTTCAAACTGATTTGTA-TTATATCAA--CAAA  193
      |||||||||||||||||||||||||||||||||| |||||||||   |||
seq2  AAATCTTTCCCAAGTCCTTTCAAACTGATTTGTATTTATATCAAACAAAA  198

seq1  TATTCTCACAATAGGCC-AATTTGGTAAGGCAACTTAAAAGCAAACAAAT  242
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  TATTCTCACAATAGGCCAAATTTGGAAAGGCAACTTAAAAGCAAACAAAT  248

seq1  AAAAAACAAAAACCACATTGGCCTTTTCATTAGCTACATAATTTTGTTGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAACCACATTGGCCTTTTCATTAGCTACATAATTTTGTTGG  298

seq1  CATTCCCCTTGATTTTAG-AAGACTGTTTGTAATTTACATATTAGCTC-A  340
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  CATTCCCCTTGATTTTAGAAAGACTGTTTGTAATTTACATATTAGCTCAA  348

seq1  AGTTTAC-AATGAGC-AAAGGAGAAAAGAATGAAATAATGTCTCCGG-AC  387
      ||||||| ||||||| ||||||||||||||||||||||||||||||| ||
seq2  AGTTTACAAATGAGCAAAAGGAGAAAAGAATGAAATAATGTCTCCGGAAC  398

seq1  AGTTTGGATTTCAAAGCTCGTGCTCTAAACAATTCTGAGTCTATATCACC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGATTTCAAAGCTCGTGCTCTAAACAATTCTGAGTCTATATCACC  448

seq1  TGAAAATCTTAATCATCAATTATTTTAAAATCATGTTTCATAATATATAT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCTTAATCATCAATTATTTTAAAATCATGTTTCATAATATATAT  498

seq1  GTGCAGTGGCTTATATATGTGTGAATCACTACGTGTTTATATAATGTATA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTGGCTTATATATGTGTGAATCACTACGTGTTTATATAATGTATA  548

seq1  TGTGTGGAGAGAAAATTGGATTTCTTATATTTTTGCTACATCTGCCAAAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGAGAGAAAATTGGATTTCTTATATTTTTGCTACATCTGCCAAAA  598

seq1  AACACATAAAAGAGAATATGCTAAGAGTGTATGTATAATACTTTTTCCCT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATAAAAGAGAATATGCTAAGAGTGTATGTATAATACTTTTTCCCT  648

seq1  TTGGTAGCTCAATAGCCATGTAATCAGAGGATCTGGCTTTATTATGAATG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGCTCAATAGCCATGTAATCAGAGGATCTGGCTTTATTATGAATG  698

seq1  AATCATACATTTAGAATCAACATAGATTCAGAGTAAAAATGAATGTAGAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATACATTTAGAATCAACATAGATTCAGAGTAAAAATGAATGTAGAA  748

seq1  GATTATTTTAATTTCTCATGTTGAACTTCATATTCCAAAAGTTCTGGGCT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTTAATTTCTCATGTTGAACTTCATATTCCAAAAGTTCTGGGCT  798

seq1  GATTCCCAACTTAGTCTGACTCAGCCACATCCCCCTCACAGGATGTGGTG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCAACTTAGTCTGACTCAGCCACATCCCCCTCACAGGATGTGGTG  848

seq1  GTAGGAGGAGGTGGTAGGTCTTGAGGGCACAGACCTCCCTAATGCATTAC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGGAGGTGGTAGGTCTTGAGGGCACAGACCTCCCTAATGCATTAC  898

seq1  CTCACCTAGGGTTCCGGGCCACAGACTCAGCTTTTCAGAGCACAGAGCAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTAGGGTTCCGGGCCACAGACTCAGCTTTTCAGAGCACAGAGCAA  948

seq1  GAATCAGCCCTTGAATTC  955
      ||||||||||||||||||
seq2  GAATCAGCCCTTGAATTC  966