BAC Information

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BAC

Clone NameB6Ng01-222A01
Chromosome1 (Build37)
Map Location 144,176,005 - 144,321,169
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222A01.bB6Ng01-222A01.g
ACCGA037143GA037144
length1,2341,149
definitionB6Ng01-222A01.b B6Ng01-222A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,319,885 - 144,321,169)(144,176,005 - 144,177,150)
sequence
gaattctttttcagtatgtaagctgctacttagttcaaattaccatgtca
tttgcttcaagaagaattttatcttcatgaggtcctatttattaattttt
tctattcatgcctgtgctattggcattctactcagaaagtcttcctgtgc
caatgatttactatatcctactttctctctctagagatttgagatatcaa
gtaataacatgaatactatttacacagcagtaaatctactaatctatgag
caagaaatatcttttcaacttctgttgtcttctttagctttttcttcaac
atcttaaagatatattgtacaagtcttttacttgtctggttagaattaac
cagagatatttaattatttatgtagtctaatttataagctattatttcct
ttatttctcttcctccttaattgctatttatatatagaaaagctaatgat
gtataaccaagggaaaaaaaagagaatactagtatagatagaaagaaggg
aataaaaagatagaaggaataagttggaaaggaatatgtgaaatcagatt
tggagaggtaaaacaaatagaggccttttcacaaaaataaatacaaaaag
agcaaaagagcaatcaattctcaaattcatctggaaatgcaaaaaaaaac
aaaaacaaaaaacaaaaaaacaaacaaaaaacaaacaaacaacaacaaca
acaacaacaaaaaaaacaagtacccaaaagagcaaaaacaattcttaaca
ataaaagaacagctggaggaatccccatccctgacctcaagctgtactac
agaacaatagtgataaaatctgcatggtattggtacagagacagacacgt
tgatcaatggaatagaattgaagacccagaagtaaaaccacacacttatg
gtcatgagcaggcatcatctgaagcctattactttcactctttgagaact
actagtgaacaaaggcttatttagattgagtgtcagagaggcctcagaag
gatcttcttactgagatagttctattcctcagcctctgacctcctcagtc
tcatagaacattatgaaaggagccattaatttttacatcaatgttagaat
tccaacatggtccctgacagaagaatgtaattttaatagaacagatgtag
gaatagaaggtagaatggactggaccttgaaatatgtcaaccgggatatg
gaatagttttaggaaatacatctatataccacat

gaattcacattggtcagacattgtgtaaggattatttaaacatgagaacg
agatttgaagggaaatataattgtgtagatacttttcatgggaaaatgta
tagaggagagatggcttgaatatcaggctatattttacccaccttcaaca
gacaggaaatcccagtgttgccagcagagagatcagataacattacaaat
ctgttttgttggggctaatactagagcccacagataaaaagtatatgact
tttataagacagggtccatcagataaaagaaaaaatgcagaatttaatgg
agctcctgaataaatccctgacattttgtaggctttcctttaaagtttgt
aacaggtattatatgctggagaagaatgagaggaagctcagtggtggggt
tcgcatgacaaaccttacatttgataaaagccagatcattttcttcttat
aatgaatgtgccttcttatctctaaaatgtctcctgctgtctacagaaaa
taaaagaagctaaatcttccattgcttacattatattgcagtctatattt
tacagttgataaagtattttacctcagatctactgaactataatttccat
tcattttttccccaggaaaagaactaaaatggtggctagagtaccagtac
ctgagatccatcccaaccaaattaatactgtgattgcaagtaatagatga
ttatgacactaggttacagaaagtgaaattattctccgtgttttagtgtc
aatagcatgaacagcagctttctataaaacatgaagccagagaatcctta
tatttagtaacaacctcatctaagcccaatctataattatttgattgaat
gagacaagttaaaaacatgagctctcctgtagatgttcagagaaagtttt
aaatataaatatttaattatagtcaggacacaaatgtcagttttaataat
taatactgaatataaaacataaaaatataaattaccattattagtattta
gatgccaatgtcagtcttagttattaatacttgtctagtaattctggctg
tgaaagttcttatttttaatatttcacataactactgaagctcttattat
ataaattgagctctggatatctaaacagctgaatcccgtatagggagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_144319885_144321169
seq2: B6Ng01-222A01.b_46_1279 (reverse)

seq1  ATGTGGTATATATTGTGAATAATTTATATATTCTCTGATTAGAAAAAAAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CATCATAATTTGTGATAATGAATTATCTCTATAAAAAACTATATCCAATT  100
             || ||  |||  ||  ||| ||     |||||||| ||||  |
seq2  -------ATGTGGTATATAGATGTATTTC---CTAAAACTAT-TCCA--T  37

seq1  ATCACTGTTACTATA-TTCA--GT-CACTACATTCTACC-TCTAT--CTA  143
      ||| | |||   ||| ||||  || || | ||||||||| |||||  |||
seq2  ATCCCGGTTGACATATTTCAAGGTCCAGTCCATTCTACCTTCTATTCCTA  87

seq1  CATCTG-TCTATTAAAATCTACATTCTTCTGTCAGG--ACATGTTTGGAA  190
      |||||| ||||||||||| |||||||||||||||||   |||| ||||||
seq2  CATCTGTTCTATTAAAAT-TACATTCTTCTGTCAGGGACCATG-TTGGAA  135

seq1  TTCTAACACTGATGTAAAAATTAAT-GCT-CTTTCATAATG-TCTATGAA  237
      |||||||| |||||||||||||||| ||| ||||||||||| ||||||| 
seq2  TTCTAACATTGATGTAAAAATTAATGGCTCCTTTCATAATGTTCTATGA-  184

seq1  GAACTGAGGA-GTCAGAGGCTGAGGAATAGAACTATCTCAGTAAG-AGAT  285
        |||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  -GACTGAGGAGGTCAGAGGCTGAGGAATAGAACTATCTCAGTAAGAAGAT  233

seq1  TCTTCTGA-GCCTCTCTGACACTCAATCTAAATAAGCCTTTGTTCACTAG  334
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAGGCCTCTCTGACACTCAATCTAAATAAGCCTTTGTTCACTAG  283

seq1  TAGTTCTCAAAGAGTGAAAGTAATAGGCTTCAGATGATGCCTGCTCATGA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTCAAAGAGTGAAAGTAATAGGCTTCAGATGATGCCTGCTCATGA  333

seq1  CCATAAGTGTGTGGTTTTACTTCTGGGTCTTCAATTCTATTCCATTGATC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGTGTGTGGTTTTACTTCTGGGTCTTCAATTCTATTCCATTGATC  383

seq1  AACGTGTCTGTCTCTGTACCAATACCATGCAGATTTTATCACTATTGTTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGTCTGTCTCTGTACCAATACCATGCAGATTTTATCACTATTGTTC  433

seq1  TGTAGTACAGCTTGAGGTCAGGGATGGGGATTCCTCCAGCTGTTCTTTTA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTACAGCTTGAGGTCAGGGATGGGGATTCCTCCAGCTGTTCTTTTA  483

seq1  TTGTTAAGAATTGTTTTTGCTCTTTTGGGTACTTGTTTTTTTTGTTGTTG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAGAATTGTTTTTGCTCTTTTGGGTACTTGTTTTTTTTGTTGTTG  533

seq1  TTGTTGTTGTTGTTTGTTTGTTTTTTGTTTGTTTTTTTGTTTTTTGTTTT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTTGTTTGTTTTTTGTTTGTTTTTTTGTTTTTTGTTTT  583

seq1  TGTTTTTTTTTGCATTTCCAGATGAATTTGAGAATTGATTGCTCTTTTGC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTTGCATTTCCAGATGAATTTGAGAATTGATTGCTCTTTTGC  633

seq1  TCTTTTTGTATTTATTTTTGTGAAAAGGCCTCTATTTGTTTTACCTCTCC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGTATTTATTTTTGTGAAAAGGCCTCTATTTGTTTTACCTCTCC  683

seq1  AAATCTGATTTCACATATTCCTTTCCAACTTATTCCTTCTATCTTTTTAT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGATTTCACATATTCCTTTCCAACTTATTCCTTCTATCTTTTTAT  733

seq1  TCCCTTCTTTCTATCTATACTAGTATTCTCTTTTTTTTCCCTTGGTTATA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTTTCTATCTATACTAGTATTCTCTTTTTTTTCCCTTGGTTATA  783

seq1  CATCATTAGCTTTTCTATATATAAATAGCAATTAAGGAGGAAGAGAAATA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTAGCTTTTCTATATATAAATAGCAATTAAGGAGGAAGAGAAATA  833

seq1  AAGGAAATAATAGCTTATAAATTAGACTACATAAATAATTAAATATCTCT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATAATAGCTTATAAATTAGACTACATAAATAATTAAATATCTCT  883

seq1  GGTTAATTCTAACCAGACAAGTAAAAGACTTGTACAATATATCTTTAAGA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATTCTAACCAGACAAGTAAAAGACTTGTACAATATATCTTTAAGA  933

seq1  TGTTGAAGAAAAAGCTAAAGAAGACAACAGAAGTTGAAAAGATATTTCTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGAAAAAGCTAAAGAAGACAACAGAAGTTGAAAAGATATTTCTT  983

seq1  GCTCATAGATTAGTAGATTTACTGCTGTGTAAATAGTATTCATGTTATTA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAGATTAGTAGATTTACTGCTGTGTAAATAGTATTCATGTTATTA  1033

seq1  CTTGATATCTCAAATCTCTAGAGAGAGAAAGTAGGATATAGTAAATCATT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATCTCAAATCTCTAGAGAGAGAAAGTAGGATATAGTAAATCATT  1083

seq1  GGCACAGGAAGACTTTCTGAGTAGAATGCCAATAGCACAGGCATGAATAG  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGAAGACTTTCTGAGTAGAATGCCAATAGCACAGGCATGAATAG  1133

seq1  AAAAAATTAATAAATAGGACCTCATGAAGATAAAATTCTTCTTGAAGCAA  1234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAATAAATAGGACCTCATGAAGATAAAATTCTTCTTGAAGCAA  1183

seq1  ATGACATGGTAATTTGAACTAAGTAGCAGCTTACATACTGAAAAAGAATT  1284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATGGTAATTTGAACTAAGTAGCAGCTTACATACTGAAAAAGAATT  1233

seq1  C  1285
      |
seq2  C  1234


seq1: chr1_144176005_144177150
seq2: B6Ng01-222A01.g_67_1215

seq1  GAATTCACATTGGTCAGACATTGTGTAAGGATTATTTAAACATGAGAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTGGTCAGACATTGTGTAAGGATTATTTAAACATGAGAACG  50

seq1  AGATTTGAAGGGAAATATAATTGTGTAGATACTTTTCATGGGAAAATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGAAGGGAAATATAATTGTGTAGATACTTTTCATGGGAAAATGTA  100

seq1  TAGAGGAGAGATGGCTTGAATATCAGGCTATATTTTACCCACCTTCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGAGATGGCTTGAATATCAGGCTATATTTTACCCACCTTCAACA  150

seq1  GACAGGAAATCCCAGTGTTGCCAGCAGAGAGATCAGATAACATTACAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAATCCCAGTGTTGCCAGCAGAGAGATCAGATAACATTACAAAT  200

seq1  CTGTTTTGTTGGGGCTAATACTAGAGCCCACAGATAAAAAGTATATGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTTGGGGCTAATACTAGAGCCCACAGATAAAAAGTATATGACT  250

seq1  TTTATAAGACAGGGTCCATCAGATAAAAGAAAAAATGCAGAATTTAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGACAGGGTCCATCAGATAAAAGAAAAAATGCAGAATTTAATGG  300

seq1  AGCTCCTGAATAAATCCCTGACATTTTGTAGGCTTTCCTTTAAAGTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGAATAAATCCCTGACATTTTGTAGGCTTTCCTTTAAAGTTTGT  350

seq1  AACAGGTATTATATGCTGGAGAAGAATGAGAGGAAGCTCAGTGGTGGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTATTATATGCTGGAGAAGAATGAGAGGAAGCTCAGTGGTGGGGT  400

seq1  TCGCATGACAAACCTTACATTTGATAAAAGCCAGATCATTTTCTTCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCATGACAAACCTTACATTTGATAAAAGCCAGATCATTTTCTTCTTAT  450

seq1  AATGAATGTGCCTTCTTATCTCTAAAATGTCTCCTGCTGTCTACAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGTGCCTTCTTATCTCTAAAATGTCTCCTGCTGTCTACAGAAAA  500

seq1  TAAAAGAAGCTAAATCTTCCATTGCTTACATTATATTGCAGTCTATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAGCTAAATCTTCCATTGCTTACATTATATTGCAGTCTATATTT  550

seq1  TACAGTTGATAAAGTATTTTACCTCAGATCTACTGAACTATAATTTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGATAAAGTATTTTACCTCAGATCTACTGAACTATAATTTCCAT  600

seq1  TCATTTTTTCCCCAGGAAAAGAACTAAAATGGTGGCTAGAGTACCAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTCCCCAGGAAAAGAACTAAAATGGTGGCTAGAGTACCAGTAC  650

seq1  CTGAGATCCATCCCAACCAAATTAATACTGTGATTGCAAGTAATAGATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCCATCCCAACCAAATTAATACTGTGATTGCAAGTAATAGATGA  700

seq1  TTATGACACTAGGTTACAGAAAGTGAAATTATTCTCCGTGTTTTAGTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACACTAGGTTACAGAAAGTGAAATTATTCTCCGTGTTTTAGTGTC  750

seq1  AATAGCATGAACAGCAGCTTTCTATAAAACATGAAGCCAGAGAATCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATGAACAGCAGCTTTCTATAAAACATGAAGCCAGAGAATCCTTA  800

seq1  TATTAAGTAACAACCTCATCTAAGCCCAATCTATAATTATTTGATTGAAT  850
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTAACAACCTCATCTAAGCCCAATCTATAATTATTTGATTGAAT  850

seq1  GAGACAAGTTAAAAACATGAGCTCTCCTGTAGATGTTCAGAGAAAGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGTTAAAAACATGAGCTCTCCTGTAGATGTTCAGAGAAAGTTTT  900

seq1  AAATATAAATATTTAATTATAGTCA-GACACAAATGTCAGTTTTAATAAT  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAATATAAATATTTAATTATAGTCAGGACACAAATGTCAGTTTTAATAAT  950

seq1  TAATACTGAATATAAAACATAAAAATATAAATTACCATTA-TAGTATTTA  998
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAATACTGAATATAAAACATAAAAATATAAATTACCATTATTAGTATTTA  1000

seq1  GATGCCAATGTCAGTCTTAGTTA-TAATAC-TGTCTAAGTAATTTTCTGC  1046
      ||||||||||||||||||||||| |||||| ||||| |||||  ||||| 
seq2  GATGCCAATGTCAGTCTTAGTTATTAATACTTGTCT-AGTAA--TTCTGG  1047

seq1  CTGTGAA--GTCTTATTTTTAATATTTTCACATAACTACTGAAGCTCTTA  1094
      |||||||   |||||||||||||| |||||||||||||||||||||||||
seq2  CTGTGAAAGTTCTTATTTTTAATA-TTTCACATAACTACTGAAGCTCTTA  1096

seq1  TTTATATAAAATGAGCTCTGGATA-CT-AACAGCTTGATACCCTATAGGG  1142
       ||||||||| ||||||||||||| || |||||||  || || |||||||
seq2  -TTATATAAATTGAGCTCTGGATATCTAAACAGCTGAATCCCGTATAGGG  1145

seq1  AGTT  1146
      ||||
seq2  AGTT  1149


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