BAC Information

Click to search

BAC

Clone NameB6Ng01-222A16
Chromosome1 (Build37)
Map Location 144,268,773 - 144,412,590
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222A16.bB6Ng01-222A16.g
ACCGA037173GA037174
length1,1931,184
definitionB6Ng01-222A16.b B6Ng01-222A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,411,389 - 144,412,590)(144,268,773 - 144,269,962)
sequence
gaattcagtacttcttacaacaactaagagtggcagagcagataacatta
ctgaggaagagatgcttgaaggtgaacaactcccagatccagaacataga
caactacttaaaaatgctgtgctgattgtattgtgaaatcagtttaaaag
tataaggggttcaaatcgttgcaacccaggatgaaaaattggtttctcat
tattgagttagaacaattggttgttaaaaatggacagcaagtagagcaga
caaaagacctatgaccactgtccatagcagaacgcttctgtaaccatgga
agaaatgcaaattctgggtaaataaggggttcaagaaaggatagaacaga
agccacggagagataatttaaatgtacacaaaatatatacccatttcatc
atctaaacacacaaagagattatcaatttttgataaggaggttacacttg
gaatcaatatgcagagtggagctgtcctggtgcaattatccacttccata
ctaactcatccatttcttaattgttttttgataagtctggttacagatta
gagattcattgtattcataaaataagaaccatatatgtataaatgatagg
cacactactggtctgagggattcttagctgtgttatttacatctattctt
ttcatttttaattttttctaaccctaaccctaatcctaaccctaactaca
tctattcttgaacatgctcagtaatattacagtaatgctctgtaatattt
attacagaataaatggattctgtaaattttcaagctataagaatttagat
ttatatattttgaatcatacatcttctacatttttgtttttgttttcaac
cataattaaaccattaatctaattaataatggcaattttaaattatttga
gggttaagattgtgtctcctaacttctatgggataaattttgaaggctgt
ttttactacattgacacaattccagttctagttttgtaaactcttcagag
ttctttaacattactgaatgatcatttctgggtaatgatgaacagactgc
agagactgaatgtgatgccactgtacatttatcttttactacatgcatat
gaatttatgactggtttttagccaaataggtctaatgaacgcagttagat
atttacctgagttagacataagatttagactctccaaaacatt

gaattctgtttggtctggccttagaggaagaagatgtgcttaatccctga
gagacttgaggccccagtgaatggggagacctcgtacagtggagcaccat
ttctgaggcaaaggcaagtaggaatagaatgaggaactgtgagagatgga
accatgaggggatgcaaggactagaccacaaataaaataatttttaaaag
gtaattaattaaacactattaattgtttaatttggtaaaaaacaaagcaa
taaaatattagaaaatcatctgaacttatataaaaactgggccctattac
acaatctaagaaatagtaatcatttcttttttttgaaaattatatatgag
agtagtctatgaccttacccatgaacttggtctttcccatgtatgctcct
ggttggtggccagtctctgggagctccctggggtttgggttaattgagac
tgctaatcttccgatggggttgccttcccctttcccttcttcaatccttt
ccctaattcagcctataactgcagtattttgcccatactactctaggtca
aattgagaatggaaggactgtcaaaaaacgtatgtccaaatgcagactcc
atgaaagaaggaacactatattacttatagtgttttgctttttctaaaag
ttttcttattcccatattgtgctgtagtaggttgtatatagtattaaata
tatagaaaaatattagcacgcttaagcaaatatagtcagttctgaaacta
tagcagtatgacttcaaatataacttgccaatagtgtttactttcagacc
agtattttatactcagaagacagtttctaaatatggctataaaataatca
tactgctcaaaaaaggcttgtatggaatgagagcatctgaaaactagaag
acaggaaatttgaaaacagactgacacaaacacttatgcaccaatataag
aagaggttgaagatcaactaaatttgtttaacttgtttcttctgtgctct
gctttcttgtcatgacatataccttgacaggcttcacattgaaggcatga
ctcataagtatgtcctcaatattactcagcatcttgcttacacactagga
gataaattggaatataaattgcctcaatctttggaaggtcaaccggatca
atatagttaccctagaagggttcttttcttgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_144411389_144412590
seq2: B6Ng01-222A16.b_48_1240 (reverse)

seq1  AATGTTT--GAAACTCTAATTCTTATGTCTATACCTCAAGTAAAATATCT  48
      |||||||  || | ||||| |||||||||  || |||| || ||||||||
seq2  AATGTTTTGGAGAGTCTAAATCTTATGTC--TAACTCAGGT-AAATATCT  47

seq1  AAACACTTCCTGTTCATTAGACTTATTTTGCTTAAAAACAAGTCATTAAA  98
      |   ||| |  ||||||||||| ||||| || ||||||| ||||| ||||
seq2  A---ACTGC--GTTCATTAGACCTATTTGGC-TAAAAACCAGTCA-TAAA  90

seq1  ATCATATGCATGTAGTAAAAGATAAATGTACAGTGGCATCACATTCAGTC  148
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGCATGTAGTAAAAGATAAATGTACAGTGGCATCACATTCAGTC  140

seq1  TCTGCAGTTCTGTTCATCATTACCCAGAAATGATCATTCAGTAATGTT-A  197
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  TCTGCAG-TCTGTTCATCATTACCCAGAAATGATCATTCAGTAATGTTAA  189

seq1  AGAACTCTGAAGAGTTTTACAAAACTAGAACTGG-ATTGTGTCAATGTAG  246
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  AGAACTCTGAAGAG-TTTACAAAACTAGAACTGGAATTGTGTCAATGTAG  238

seq1  TAAAAACAGCCCTTCAAAATTTATCCCATAGAAGTTAGGAGACACAATCT  296
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAG-CCTTCAAAATTTATCCCATAGAAGTTAGGAGACACAATCT  287

seq1  TAACCCTCAAATAATTTAAAATTGCCATTATTAATTAGATTAATGGTTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTCAAATAATTTAAAATTGCCATTATTAATTAGATTAATGGTTTA  337

seq1  ATTATGGTTGAAAACAAAAACAAAAATGTAGAAGATGTATGATTCAAAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGTTGAAAACAAAAACAAAAATGTAGAAGATGTATGATTCAAAAT  387

seq1  ATATAAATCTAAATTCTTATAGCTTGAAAATTTACAGAATCCATTTATTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATCTAAATTCTTATAGCTTGAAAATTTACAGAATCCATTTATTC  437

seq1  TGTAATAAATATTACAGAGCATTACTGTAATATTACTGAGCATGTTCAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAATATTACAGAGCATTACTGTAATATTACTGAGCATGTTCAAG  487

seq1  AATAGATGTAGTTAGGGTTAGGATTAGGGTTAGGGTTAGAAAAAATTAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGTAGTTAGGGTTAGGATTAGGGTTAGGGTTAGAAAAAATTAAA  537

seq1  AATGAAAAGAATAGATGTAAATAACACAGCTAAGAATCCCTCAGACCAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAGAATAGATGTAAATAACACAGCTAAGAATCCCTCAGACCAGT  587

seq1  AGTGTGCCTATCATTTATACATATATGGTTCTTATTTTATGAATACAATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCCTATCATTTATACATATATGGTTCTTATTTTATGAATACAATG  637

seq1  AATCTCTAATCTGTAACCAGACTTATCAAAAAACAATTAAGAAATGGATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTAATCTGTAACCAGACTTATCAAAAAACAATTAAGAAATGGATG  687

seq1  AGTTAGTATGGAAGTGGATAATTGCACCAGGACAGCTCCACTCTGCATAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTATGGAAGTGGATAATTGCACCAGGACAGCTCCACTCTGCATAT  737

seq1  TGATTCCAAGTGTAACCTCCTTATCAAAAATTGATAATCTCTTTGTGTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCAAGTGTAACCTCCTTATCAAAAATTGATAATCTCTTTGTGTGT  787

seq1  TTAGATGATGAAATGGGTATATATTTTGTGTACATTTAAATTATCTCTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGATGAAATGGGTATATATTTTGTGTACATTTAAATTATCTCTCC  837

seq1  GTGGCTTCTGTTCTATCCTTTCTTGAACCCCTTATTTACCCAGAATTTGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTCTGTTCTATCCTTTCTTGAACCCCTTATTTACCCAGAATTTGC  887

seq1  ATTTCTTCCATGGTTACAGAAGCGTTCTGCTATGGACAGTGGTCATAGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCCATGGTTACAGAAGCGTTCTGCTATGGACAGTGGTCATAGGT  937

seq1  CTTTTGTCTGCTCTACTTGCTGTCCATTTTTAACAACCAATTGTTCTAAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCTGCTCTACTTGCTGTCCATTTTTAACAACCAATTGTTCTAAC  987

seq1  TCAATAATGAGAAACCAATTTTTCATCCTGGGTTGCAACGATTTGAACCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAATGAGAAACCAATTTTTCATCCTGGGTTGCAACGATTTGAACCC  1037

seq1  CTTATACTTTTAAACTGATTTCACAATACAATCAGCACAGCATTTTTAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACTTTTAAACTGATTTCACAATACAATCAGCACAGCATTTTTAAG  1087

seq1  TAGTTGTCTATGTTCTGGATCTGGGAGTTGTTCACCTTCAAGCATCTCTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTCTATGTTCTGGATCTGGGAGTTGTTCACCTTCAAGCATCTCTT  1137

seq1  CCTCAGTAATGTTATCTGCTCTGCCACTCTTAGTTGTTGTAAGAAGTACT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTAATGTTATCTGCTCTGCCACTCTTAGTTGTTGTAAGAAGTACT  1187

seq1  GAATTC  1202
      ||||||
seq2  GAATTC  1193


seq1: chr1_144268773_144269962
seq2: B6Ng01-222A16.g_65_1248

seq1  GAATTCTGTTTGGTCTGGCCTTAGAGGAAGAAGATGTGCTTAATCCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTGGTCTGGCCTTAGAGGAAGAAGATGTGCTTAATCCCTGA  50

seq1  GAGACTTGAGGCCCCAGTGAATGGGGAGACCTCGTACAGTGGAGCACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTGAGGCCCCAGTGAATGGGGAGACCTCGTACAGTGGAGCACCAT  100

seq1  TTCTGAGGCAAAGGCAAGTAGGAATAGAATGAGGAACTGTGAGAGATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGCAAAGGCAAGTAGGAATAGAATGAGGAACTGTGAGAGATGGA  150

seq1  ACCATGAGGGGATGCAAGGACTAGACCACAAATAAAATAATTTTTAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAGGGGATGCAAGGACTAGACCACAAATAAAATAATTTTTAAAAG  200

seq1  GTAATTAATTAAACACTATTAATTGTTTAATTTGGTAAAAAACAAAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAATTAAACACTATTAATTGTTTAATTTGGTAAAAAACAAAGCAA  250

seq1  TAAAATATTAGAAAATCATCTGAACTTATATAAAAACTGGGCCCTATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTAGAAAATCATCTGAACTTATATAAAAACTGGGCCCTATTAC  300

seq1  ACAATCTAAGAAATAGTAATCATTTCTTTTTTTTGAAAATTATATATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTAAGAAATAGTAATCATTTCTTTTTTTTGAAAATTATATATGAG  350

seq1  AGTAGTCTATGACCTTACCCATGAACTTGGTCTTTCCCATGTATGCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCTATGACCTTACCCATGAACTTGGTCTTTCCCATGTATGCTCCT  400

seq1  GGTTGGTGGCCAGTCTCTGGGAGCTCCCTGGGGTTTGGGTTAATTGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTGGCCAGTCTCTGGGAGCTCCCTGGGGTTTGGGTTAATTGAGAC  450

seq1  TGCTAATCTTCCGATGGGGTTGCCTTCCCCTTTCCCTTCTTCAATCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATCTTCCGATGGGGTTGCCTTCCCCTTTCCCTTCTTCAATCCTTT  500

seq1  CCCTAATTCAGCCTATAACTGCAGTATTTTGCCCATACTACTCTAGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATTCAGCCTATAACTGCAGTATTTTGCCCATACTACTCTAGGTCA  550

seq1  AATTGAGAATGGAAGGACTGTCAAAAAACGTATGTCCAAATGCAGACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGAATGGAAGGACTGTCAAAAAACGTATGTCCAAATGCAGACTCC  600

seq1  ATGAAAGAAGGAACACTATATTACTTATAGTGTTTTGCTTTTTCTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAAGGAACACTATATTACTTATAGTGTTTTGCTTTTTCTAAAAG  650

seq1  TTTTCTTATTCCCATATTGTGCTGTAGTAGGTTGTATATAGTATTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATTCCCATATTGTGCTGTAGTAGGTTGTATATAGTATTAAATA  700

seq1  TATAGAAAAATATTAGCACGCTTAAGCAAATATAGTCAGTTCTGAAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAAATATTAGCACGCTTAAGCAAATATAGTCAGTTCTGAAACTA  750

seq1  TAGCAGTATGACTTCAAATATAACTTGCCAATAGTGTTTACTTTCAGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTATGACTTCAAATATAACTTGCCAATAGTGTTTACTTTCAGACC  800

seq1  AGTATTTTATACTCAGAAGACAGTTTCTAAATATGGCTATAAAATAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTATACTCAGAAGACAGTTTCTAAATATGGCTATAAAATAATCA  850

seq1  TACTGCTCAAAAAAGGCTTGTATGGAATGAGAGCATCTGAAAACTAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTCAAAAAAGGCTTGTATGGAATGAGAGCATCTGAAAACTAGAAG  900

seq1  ACAGGAAATTTGAAAACAGACTGACACAAAACACTTATGCACCAATATAA  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACAGGAAATTTGAAAACAGACTGACAC-AAACACTTATGCACCAATATAA  949

seq1  GAAGAGGTTGAAGATCAACTAAAATTTGTTTAACTTGTTTCTTCTGTGCC  1000
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  GAAGAGGTTGAAGATCAACT-AAATTTGTTTAACTTGTTTCTTCTGTG-C  997

seq1  TCTGCTTTCCTTGTCATGACAATATACCTTGACAGGCTCCACATTGAAGG  1050
      |||||||| ||||||||||| ||||||||||||||||| |||||||||||
seq2  TCTGCTTT-CTTGTCATGAC-ATATACCTTGACAGGCTTCACATTGAAGG  1045

seq1  CATGACTCATAAGTATGT-CTCAATATTACTCAGCATC-TGCCTACACAA  1098
      |||||||||||||||||| ||||||||||||||||||| ||| ||||| |
seq2  CATGACTCATAAGTATGTCCTCAATATTACTCAGCATCTTGCTTACAC-A  1094

seq1  CTAGAGTATAA--TTGAATATAAATTTGCTCAAATCTTTTGAATGTAAAA  1146
      ||||   ||||  | |||||||||||  ||| ||||||| ||| ||   |
seq2  CTAGGAGATAAATTGGAATATAAATTGCCTC-AATCTTTGGAAGGT--CA  1141

seq1  ACAGGATCAATAATAGTTAACCTAGTAGGGTTCTTTTCTTGAAC  1190
      || |||||||| ||||||| ||||| ||||||||||||||||||
seq2  ACCGGATCAAT-ATAGTTACCCTAGAAGGGTTCTTTTCTTGAAC  1184


| Home | SequenceCutter | Blast | Download |