BAC Information

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BAC

Clone NameB6Ng01-222M20
Chromosome1 (Build37)
Map Location 83,085,225 - 83,086,404
singlet/doubletsinglet
Overlap genenone
Upstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272
Downstream geneCcl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958, 5033414K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222M20.bB6Ng01-222M20.g
ACCGA037720GA037721
length1,1691,182
definitionB6Ng01-222M20.b B6Ng01-222M20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagttagtgctgtcaatgtgcacatgggtataggagcattcatga
gaacataagccccctattaccttcagatcatatcaccaccatatcaccga
agaaaactgactgtcctcatcccaggagccattaactttctatagcctct
gagctaggagtaacattcatgagtctcttccctctctatgctgcctaact
tttacccaatatgtttttttttttcatttctctaaatttctaaatccagt
tactactgtgtaaaatctctttatctcatcctccctataaaaccccacca
actgtgacttctctaagttcttcagatctagctcctgcaacatggtcttg
cttaagggaaaatattttgcttaagtcaaaaaatatccctctagagtgga
aagagaaaagaggaagggggcatggagagggagaacgggatcaagaacat
ggaagggcgtgcgtgtgtctgtgtgtctgtgtcatctgtgtgtgtctgag
tctgtgtgtgtattaggtgggtagatcaagtactgtgcatggatatacag
caatgttccactgaaactcagcacattgtacagttagtatgcactattaa
gaaaaaacagcatccatagaaaagacctgaccaaagttttggttaagagt
gaacattgcttggtgaggatgtttaccttgttcccggggactataggaga
ccctatggccgcccttggcctaaaccattcgggatgaggtcaccaaggtg
cttaaatgagcctatgatgctcagagggcctttcattcagcctggccctt
tctgcggttcctctctcccaaccccgttccatgggcataacaatatcata
gcaaaatcttcccaaagcacctaaaggaccttgctgggcttctgttcaca
tcctgccctgcctcctccctagacctgagctctgcatggcctgagctgac
cttatagctctgtcccgctttgcctgccccaaggcatatcctctgagact
gtttaagagcttccagaagcaaactcgatgaaactccaggagaagaatca
agttcatggacaaatagaagagtgaagcctgtgagaaatcgggtcttctg
gagagcaatccagcagcatgaatgctgggtcacaccctagtaaaaactca
agtcataaagttaaaaatc
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gggaaaagggtaccagccagataaaatgcgagctaatcggtcaaggaaaa
agccaaaagtggctggcaaaggccagcttgctgcttggcctcctggcagt
cggtttcaaggtcatagtgcacctgcgccctatgcagagccctcgccctg
tgtagtgcatcagccctgtgtagtgcatcagccctgcgcagagaggcaat
ggacagagaggcaatgcgcagactcgttcattccaaaggaggaacaaagg
aaaatacaacaggcatttccggtctttgaaggagccgagggtgggcgtgt
ccacgctccggtagaatatgtgcaaattaaagagcttgccgagtcggtcc
gtaaatatggaatcaatgctaattttaccttggtgcagttagacaggctt
gccggcatggcactaactcctgccgactggcaaatgattgcaaaagccgc
tctccctagtatgggcaaatatatggaatggagagctctgtggcaagagg
ctgcacacgcgcaggcccgagcaaacgctgctgctttaactccagagcag
agagattggacttttgacttgttaacgggtcagggagcttattctgctga
tcaaacaaactaccattggggagcttatgcccaaatttcctccacggcta
ttagggcctggaaggcgctctcccgagcaggtgaagccactggactaaca
aagatcgtccagggacctcagagtcattctcagattttgtggccagaatg
acagaggcagcagagcgtatttttggagattcagagcaagccgcacctct
ggtagaacaactcatttatgagcaagccacgcaggaatgccgagcgggcc
atagccccaagaaagaacaaaggcttacaagactggctcaggttgtcgga
gcttggggacctctcacaatgcagcttagcggccaccatctccaatccca
gaacgctcgtagcagaatgatcagaggacatgtttactgcgaagcctggc
atcttagaaagatgcaagcttcagataaaaaagctgggaacttcgttact
gtgcctgatcctggcacgttaatcgcctctattatcgaagtcctcctaaa
cctctggataccttgtggtgcacaccctcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_83085225_83086404
seq2: B6Ng01-222M20.b_46_1214

seq1  GAATTCAGTTAGTGCTGTCAATGTGCACATGGGTATAGGAGCATTCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAGTGCTGTCAATGTGCACATGGGTATAGGAGCATTCATGA  50

seq1  GAACATAAGCCCCCTATTACCTTCAGATCATATCACCACCATATCACCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAAGCCCCCTATTACCTTCAGATCATATCACCACCATATCACCGA  100

seq1  AGAAAACTGACTGTCCTCATCCCAGGAGCCATTAACTTTCTATAGCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTGACTGTCCTCATCCCAGGAGCCATTAACTTTCTATAGCCTCT  150

seq1  GAGCTAGGAGTAACATTCATGAGTCTCTTCCCTCTCTATGCTGCCTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGGAGTAACATTCATGAGTCTCTTCCCTCTCTATGCTGCCTAACT  200

seq1  TTTACCCAATATGTTTTTTTTTTTCATTTCTCTAAATTTCTAAATCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCAATATGTTTTTTTTTTTCATTTCTCTAAATTTCTAAATCCAGT  250

seq1  TACTACTGTGTAAAATCTCTTTATCTCATCCTCCCTATAAAACCCCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGTGTAAAATCTCTTTATCTCATCCTCCCTATAAAACCCCACCA  300

seq1  ACTGTGACTTCTCTAAGTTCTTCAGATCTAGCTCCTGCAACATGGTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGACTTCTCTAAGTTCTTCAGATCTAGCTCCTGCAACATGGTCTTG  350

seq1  CTTAAGGGAAAATATTTTGCTTAAGTCAAAAAATATCCCTCTAGAGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGGAAAATATTTTGCTTAAGTCAAAAAATATCCCTCTAGAGTGGA  400

seq1  AAGAGAAAAGAGGAAGGGGGCATGGAGAGGGAGAACGGGATCAAGAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAGAGGAAGGGGGCATGGAGAGGGAGAACGGGATCAAGAACAT  450

seq1  GGAAGGGCGTGCGTGTGTCTGTGTGTCTGTGTCATCTGTGTGTGTCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCGTGCGTGTGTCTGTGTGTCTGTGTCATCTGTGTGTGTCTGAG  500

seq1  TCTGTGTGTGTATTAGGTGGGTAGATCAAGTACTGTGCATGGATATACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTGTATTAGGTGGGTAGATCAAGTACTGTGCATGGATATACAG  550

seq1  CAATGTTCCACTGAAACTCAGCACATTGTACAGTTAGTATGCACTATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTCCACTGAAACTCAGCACATTGTACAGTTAGTATGCACTATTAA  600

seq1  GAAAAAACAGCATCCATAGAAAAGACCTGACCAAAGTTTTGGTTAAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACAGCATCCATAGAAAAGACCTGACCAAAGTTTTGGTTAAGAGT  650

seq1  GAACATTGCTTGGTGAGGATGTTTACCTTGTTCCCGGGGACTATAGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTGCTTGGTGAGGATGTTTACCTTGTTCCCGGGGACTATAGGAGA  700

seq1  CCCTATGGCCGCCCTTGGCCTAAACCATTCGGGATGAGGTCACCAAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGGCCGCCCTTGGCCTAAACCATTCGGGATGAGGTCACCAAGGTG  750

seq1  CTTAAATGAGCCTATGATGCTCAGAGGGCCTTTCATTCAGCCTGGCCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGAGCCTATGATGCTCAGAGGGCCTTTCATTCAGCCTGGCCCTT  800

seq1  TCTGCGGTTCCTCTCTCCCAACCCCGTTCCATGGGCATAACAATATCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGGTTCCTCTCTCCCAACCCCGTTCCATGGGCATAACAATATCATA  850

seq1  GCAAAATCTTCCCAAAGCACCTAAAGGACCTTGCTGGGCTTCTGTTCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCTTCCCAAAGCACCTAAAGGACCTTGCTGGGCTTCTGTTCACA  900

seq1  TCCTGCCCTGCCTCCTCCCTAGACCTGAGCTCTGCATGGCCTGAGCTGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCTGCCTCCTCCCTAGACCTGAGCTCTGCATGGCCTGAGCTGAC  950

seq1  CTTATAGCTCTGTCCCGCTTTGCCTGCCCCAAGGCAATATCCTCTGAGAC  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTATAGCTCTGTCCCGCTTTGCCTGCCCCAAGGC-ATATCCTCTGAGAC  999

seq1  TGGTTTAAGAGCTTCCAGAAGCAAAACTCGATGAAACTCCAGGAG-AGAA  1049
      | |||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  T-GTTTAAGAGCTTCCAGAAGC-AAACTCGATGAAACTCCAGGAGAAGAA  1047

seq1  CCAAGTTCATGGACAAATAG-AGAGTGAAGCTTGTGGAGAAA-CGGGTCT  1097
       ||||||||||||||||||| |||||||||| ||| |||||| |||||||
seq2  TCAAGTTCATGGACAAATAGAAGAGTGAAGCCTGT-GAGAAATCGGGTCT  1096

seq1  TCT-GAGAGCCAATCACAGCAGCATGAATGCTGGGCCACACCCCTTAGTA  1146
      ||| ||||| ||||| ||||||||||||||||||| |||||||  |||||
seq2  TCTGGAGAG-CAATC-CAGCAGCATGAATGCTGGGTCACACCC--TAGTA  1142

seq1  AAATACCTCAAGTCAAATAAAATGTTTAAAAATC  1180
      ||  | ||||||||  |||||    |||||||||
seq2  AA--AACTCAAGTC--ATAAA---GTTAAAAATC  1169