BAC Information

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BAC

Clone NameB6Ng01-223E06
Chromosome1 (Build37)
Map Location 135,349,710 - 135,350,617
singlet/doubletsinglet
Overlap genenone
Upstream geneRipk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13
Downstream geneLOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223E06.bB6Ng01-223E06.g
ACCGA038059GA038060
length1,216910
definitionB6Ng01-223E06.b B6Ng01-223E06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgagtgtctatgccaccctacaaccaggcttacttatgccta
ggtgaaacggaaggatctacatactgacacatggcatggtcctgatcaga
tacttaatatgggggagagaacatgtttgtgttttttccccaggatgctg
caggagcatgctagttcccagagtgattggtgagatgtgctgatgctggg
acaaagaatgatgctgacctgtgagcttgctgagtgccttgacaacagtg
actgggaagctgttttggacatatgttcctgacccacctttgcttgcctc
tatcccagattggccaagctgccttgcctcaggcttttagaccttatggg
agagagaacatggagactgtggaaactgtcttcaaatacttgaccaaaaa
gagaagttatgatgactcttctttttcctttaatgtgaccagttattctg
actcaatcatggactggtctagaaatcaatccaatattggaaggctagtt
ctggacatttttttagagacatatttgaaagttagctgcagttctctatg
atgttatgttagtaatagataaaattgatacaggatctggatttcaaaca
aatgttagtacatgtgttaaggcgcccaaccttttattgattggtcatgt
caaaattactttagcttcttctacagtatttaatagaagttgtattgatt
gtacactttctaactgtgttaatgtgttatggcatatctgttatggtgat
ctatcaaccagattttgttttattggctgtgaatatgacaggacctttgg
tattattaagaaagcttgcaagtactggaagaagtgagtcagctttaagc
agaagcaagaggatagtgggcttgattattgctggtatagcagctttaat
tacattgatacctagcaccactgcctctgcatttgctttgacacaagaag
ttaagacagctactttgtaaaccatttagcaaaaaatgttactaatgttc
tgagtattcaagaggatttagataggcattttgaacacagtttgatgctt
ctttataataagtattcaaattattgtagagcagggttcaagagtctaat
ttaagagccatcttggatgccacgccgattccaatggttttgtggtactc
tgagctttacatgaattggtcatatatattgccgtaaaacgggttcactc
gatgaacacacagtgc
gaattcctgtgagccagttcagggtagggagaggaaacaaaagtccactt
tccctccctctgtctttactgtttagttaggattactattgcttcgataa
aacaccatgaccaaagagcaaatgggggaggggggcggtatctgacttac
acttgtacatccctgttcacccacaaagcagtgaggacaggaactcatga
ggaaggaacctgaagactggggctgatccaggagctgatgcagaggccaa
ggagacctgctgcttcccatggcttgatcaacctttcttatggaacccag
aacccatccatctaattaagaaaatgcccttcagcaggatcttaatgggg
cattttcttagttaatttctccattcagataactagcttgtgtcgtgtta
actaacgtaagaacagtcagcactctcaagtataaagtggattcattcac
ctctaagtgttccttcaagctgtagtgagctgggatcctgaagaggtttc
ataggaacctggggttgtatgggaagagtgggagttcggcaggaagctta
tggcacttccatagtaaagaaggcccaggaaagacagcctagaccatatg
ccctaaagaaacttagaggttcagtgtaatcccagcaaggatgtttagga
tggagctgtgctagatggggaattatgagactgggggaaccctgctgcca
gccagaggcaaaagacaataaggaaaggaaacacttctcaggatgatgcc
agagagccttgctatagtgacctgtctgcttcgtttgggatgatagctag
ttggccccgagatctctaggatatactgaagcagttatacagtggctctg
ctgacccatcaagtgacatcagggcttcctttgagtctatcaaggatgtt
ccaaaacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135349710_135350617
seq2: B6Ng01-223E06.g_65_974 (reverse)

seq1  CAGGTTTTGGAACATCCTTGATAGACTCAAAGG-AGCACTAGATGACACT  49
      ||||||||||||||||||||||||||||||||| ||| || |||| ||||
seq2  CAGGTTTTGGAACATCCTTGATAGACTCAAAGGAAGCCCT-GATGTCACT  49

seq1  GGATGGGTCAGCAGAGCCACTGTCTAACTGCTTCAGTATTTCCTAGAGAT  99
       |||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  TGATGGGTCAGCAGAGCCACTGTATAACTGCTTCAGTATATCCTAGAGAT  99

seq1  CTC-GGGACAACTAGCTATCATCCCAAACGAAGCAGACAGGTCACTATAG  148
      ||| ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGCCAACTAGCTATCATCCCAAACGAAGCAGACAGGTCACTATAG  149

seq1  CAAGGCTCTCTGGCATCATCCTGAGAAGTGTTTCCTTTCCTTATTGTCTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCTCTGGCATCATCCTGAGAAGTGTTTCCTTTCCTTATTGTCTT  199

seq1  TTGCCTCTGGCTGGCAGCAGGGTT-CCCCAGTCTCATAATTCCCCATCTA  247
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGCCTCTGGCTGGCAGCAGGGTTCCCCCAGTCTCATAATTCCCCATCTA  249

seq1  GCACAGCTCCATCCTAAACATCCTTGCTGGGATTACACTGAACCTCTAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTCCATCCTAAACATCCTTGCTGGGATTACACTGAACCTCTAAG  299

seq1  TTTCTTTAGGGCATTTGGTCTAGGCTGTCTTTCCTGGGCCTTCTTTACTA  347
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAGGGCATATGGTCTAGGCTGTCTTTCCTGGGCCTTCTTTACTA  349

seq1  TGGAAGTGCCATAAGCTTCCTGCCGAACTCCCACTCTTCCCATACAACCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGCCATAAGCTTCCTGCCGAACTCCCACTCTTCCCATACAACCC  399

seq1  CAGGTTCCTATGAAACCTCTTCAGGATCCCAGCTCACTACAGCTTGAAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCCTATGAAACCTCTTCAGGATCCCAGCTCACTACAGCTTGAAGG  449

seq1  AACACTTAGAGGTGAATGAATCCACTTTATACTTGAGAGTGCTGACTGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTAGAGGTGAATGAATCCACTTTATACTTGAGAGTGCTGACTGTT  499

seq1  CTTACGTTAGTTAACACGACACAAGCTAGTTATCTGAATGGAGAAATTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGTTAGTTAACACGACACAAGCTAGTTATCTGAATGGAGAAATTAA  549

seq1  CTAAGAAAATGCCCCATTAAGATCCTGCTGAAGGGCATTTTCTTAATTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAAATGCCCCATTAAGATCCTGCTGAAGGGCATTTTCTTAATTAG  599

seq1  ATGGATGGGTTCTGGGTTCCATAAGAAAGGTTGATCAAGCCATGGGAAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGGGTTCTGGGTTCCATAAGAAAGGTTGATCAAGCCATGGGAAGC  649

seq1  AGCAGGTCTCCTTGGCCTCTGCATCAGCTCCTGGATCAGCCCCAGTCTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTCTCCTTGGCCTCTGCATCAGCTCCTGGATCAGCCCCAGTCTTC  699

seq1  AGGTTCCTTCCTCATGAGTTCCTGTCCTCACTGCTTTGTGGGTGAACAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTTCCTCATGAGTTCCTGTCCTCACTGCTTTGTGGGTGAACAGG  749

seq1  GATGTACAAGTGTAAGTCAGATACCGCCCCCCTCCCCCATTTGCTCTTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACAAGTGTAAGTCAGATACCGCCCCCCTCCCCCATTTGCTCTTTG  799

seq1  GTCATGGTGTTTTATCGAAGCAATAGTAATCCTAACTAAACAGTAAAGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTGTTTTATCGAAGCAATAGTAATCCTAACTAAACAGTAAAGAC  849

seq1  AGAGGGAGGGAAAGTGGACTTTTGTTTCCTCTCCCTACCCTGAACTGGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGGGAAAGTGGACTTTTGTTTCCTCTCCCTACCCTGAACTGGCT  899

seq1  CACAGGAATTC  908
      |||||||||||
seq2  CACAGGAATTC  910