BAC Information

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BAC

Clone NameB6Ng01-223G01
Chromosome1 (Build37)
Map Location 21,528,182 - 21,655,220
singlet/doubletdoublet
Overlap geneKcnq5
Upstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, D1Mgi28
Downstream geneLOC435612, LOC100040338, Rims1, Rims1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223G01.bB6Ng01-223G01.g
ACCGA038137GA038138
length1,054650
definitionB6Ng01-223G01.b B6Ng01-223G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,654,165 - 21,655,220)(21,528,182 - 21,528,831)
sequence
gaattcaaagttaatggtatgaacctaatatcgctcccaatgaatttagt
gtctcagagagaatgattcttgtctgcagacatgaaaactggaatataac
aggtaaaaaagtctggcagatgtagacagatgcctactcagctaatctaa
tctgtatttttctttaatgctgtatatgtggctgctttcattagccagtt
tctctaatattgcattgagctgctcagtttttatggaggcatattagtat
tactttttagttattctacatgaccaatccaactggttattcccacaatt
gactcttctagtctcagatctccaggcattcctcatggttgcacaaaatt
tcttggtaccaaagctatccctgaggcatataagcagtagaggaaggaaa
ataacttgactttgaaaaagctagtccaagaagtaaaagagattttgtta
aagaagaaaaagtaggaaaagtgtgttttaaaaatatttactgcctgagg
ggagctcgaagaacaaaatgttgtcttgcttgttagcaaatgggtgagtt
cactaggtaccttaatgttcatctcattaatgttatcctcatctattcaa
ctgacttgaagtttttaatgcttctccttagtttaattttctgtaattta
gccagttatattagagaaatattttaggtgctcaataaattaagaaaaga
aagaaaatatagtcttaaaacatgccccaacactcaaacacatgaagact
gtaggcaatagaagcaacccactacagaaatcaccgaggaatcatggaga
tgaagtcgcagcttggacattcctctttatgtgcatctttattgccctgt
gggctacatttgtatttaaatcatttcatcataagaatcttagagctaaa
caattttcaattagccttttaaacactctcatatctcataaaaattcagt
agaaaatccccttaatatatgtgagaaccagaaacaggagggtcccggaa
ctttcatatttatgagggcatggaccatgttagctttactttcatcaggc
ccca
gaattcctcagcaaaggttcctagcccccaagcactggtaatgactattg
ctagttctcaaatagtttccactcatgtacctgggcacaaataccaccca
ctcttttaatctaccaaccactcttctaatcgaccccccatacaaataac
caaccagctaacttcatttaaaaaagagcaaagaaatgtgtataaaaatc
tagacaccgaagatgcatgaagcagctagtcttgatttctggccaatggt
ctttgagattacctatcattaaattattatctccttcccagataataagg
aagtctagccacatggtacctttttattgaacaagatgacttttcagaat
atttcttgatacttcctgtctattcgtgaagttaatctgtttacaagtta
ctcttaaaatagttttaggtgcagatttatttatttatttttggtacaaa
ttcaggattcctaacagcacatgttgtagttgttttctcattaaccaaca
gcattgttaattaaaacagtgacctatttctaatttacaagctgtctgct
gtgactattagttacttctttcttgtttttctgctgtcaaatagctgtgt
gtgtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_21654165_21655220
seq2: B6Ng01-223G01.b_43_1096 (reverse)

seq1  TGGGG-CTGATTGAAAGTAAAGCTAACATTGTCCATGCCCTCATAAATAT  49
      ||||| |||| |||||||||||||||||| ||||||||||||||||||||
seq2  TGGGGCCTGA-TGAAAGTAAAGCTAACATGGTCCATGCCCTCATAAATAT  49

seq1  GAAAGTTCCGGGACCCT-CTGTTTCTGGTTTCTCACATAATAATTAAAGG  98
      ||||||||||||||||| |||||||||| ||||||||| |||  | ||||
seq2  GAAAGTTCCGGGACCCTCCTGTTTCTGG-TTCTCACAT-ATA--TTAAGG  95

seq1  GGATTTTCTACTGAATTTTTATGAGATATGAGAGTGTTTAAAAGGCTAAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCTACTGAATTTTTATGAGATATGAGAGTGTTTAAAAGGCTAAT  145

seq1  TGAAAATTGTTTAGCTCTAAGATTCTTATGATGAAATGATTTAAATACAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTGTTTAGCTCTAAGATTCTTATGATGAAATGATTTAAATACAA  195

seq1  ATGTAGCCCACAGGGCAATAAAGATGCACATAAAGAGGAATGTCCAAGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCCCACAGGGCAATAAAGATGCACATAAAGAGGAATGTCCAAGCT  245

seq1  GCGACTTCATCTCCATGATTCCTCGGTGATTTCTGTAGTGGGTTGCTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACTTCATCTCCATGATTCCTCGGTGATTTCTGTAGTGGGTTGCTTCT  295

seq1  ATTGCCTACAGTCTTCATGTGTTTGAGTGTTGGGGCATGTTTTAAGACTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTACAGTCTTCATGTGTTTGAGTGTTGGGGCATGTTTTAAGACTA  345

seq1  TATTTTCTTTCTTTTCTTAATTTATTGAGCACCTAAAATATTTCTCTAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTTCTTTTCTTAATTTATTGAGCACCTAAAATATTTCTCTAAT  395

seq1  ATAACTGGCTAAATTACAGAAAATTAAACTAAGGAGAAGCATTAAAAACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGGCTAAATTACAGAAAATTAAACTAAGGAGAAGCATTAAAAACT  445

seq1  TCAAGTCAGTTGAATAGATGAGGATAACATTAATGAGATGAACATTAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCAGTTGAATAGATGAGGATAACATTAATGAGATGAACATTAAGG  495

seq1  TACCTAGTGAACTCACCCATTTGCTAACAAGCAAGACAACATTTTGTTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGTGAACTCACCCATTTGCTAACAAGCAAGACAACATTTTGTTCT  545

seq1  TCGAGCTCCCCTCAGGCAGTAAATATTTTTAAAACACACTTTTCCTACTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGCTCCCCTCAGGCAGTAAATATTTTTAAAACACACTTTTCCTACTT  595

seq1  TTTCTTCTTTAACAAAATCTCTTTTACTTCTTGGACTAGCTTTTTCAAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTTAACAAAATCTCTTTTACTTCTTGGACTAGCTTTTTCAAAG  645

seq1  TCAAGTTATTTTCCTTCCTCTACTGCTTATATGCCTCAGGGATAGCTTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTATTTTCCTTCCTCTACTGCTTATATGCCTCAGGGATAGCTTTG  695

seq1  GTACCAAGAAATTTTGTGCAACCATGAGGAATGCCTGGAGATCTGAGACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAGAAATTTTGTGCAACCATGAGGAATGCCTGGAGATCTGAGACT  745

seq1  AGAAGAGTCAATTGTGGGAATAACCAGTTGGATTGGTCATGTAGAATAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTCAATTGTGGGAATAACCAGTTGGATTGGTCATGTAGAATAAC  795

seq1  TAAAAAGTAATACTAATATGCCTCCATAAAAACTGAGCAGCTCAATGCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTAATACTAATATGCCTCCATAAAAACTGAGCAGCTCAATGCAA  845

seq1  TATTAGAGAAACTGGCTAATGAAAGCAGCCACATATACAGCATTAAAGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGAAACTGGCTAATGAAAGCAGCCACATATACAGCATTAAAGAA  895

seq1  AAATACAGATTAGATTAGCTGAGTAGGCATCTGTCTACATCTGCCAGACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGATTAGATTAGCTGAGTAGGCATCTGTCTACATCTGCCAGACT  945

seq1  TTTTTACCTGTTATATTCCAGTTTTCATGTCTGCAGACAAGAATCATTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCTGTTATATTCCAGTTTTCATGTCTGCAGACAAGAATCATTCT  995

seq1  CTCTGAGACACTAAATTCATT-GAAGCGATATTAGGTTCATACCATTAAC  1047
      ||||||||||||||||||||| | ||||||||||||||||||||||||||
seq2  CTCTGAGACACTAAATTCATTGGGAGCGATATTAGGTTCATACCATTAAC  1045

seq1  TTTGAATTC  1056
      |||||||||
seq2  TTTGAATTC  1054

seq1: chr1_21528182_21528831
seq2: B6Ng01-223G01.g_66_715

seq1  GAATTCCTCAGCAAAGGTTCCTAGCCCCCAAGCACTGGTAATGACTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGCAAAGGTTCCTAGCCCCCAAGCACTGGTAATGACTATTG  50

seq1  CTAGTTCTCAAATAGTTTCCACTCATGTACCTGGGCACAAATACCACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTCAAATAGTTTCCACTCATGTACCTGGGCACAAATACCACCCA  100

seq1  CTCTTTTAATCTACCAACCACTCTTCTAATCGACCCCCCATACAAATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTAATCTACCAACCACTCTTCTAATCGACCCCCCATACAAATAAC  150

seq1  CAACCAGCTAACTTCATTTAAAAAAGAGCAAAGAAATGTGTATAAAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGCTAACTTCATTTAAAAAAGAGCAAAGAAATGTGTATAAAAATC  200

seq1  TAGACACCGAAGATGCATGAAGCAGCTAGTCTTGATTTCTGGCCAATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACCGAAGATGCATGAAGCAGCTAGTCTTGATTTCTGGCCAATGGT  250

seq1  CTTTGAGATTACCTATCATTAAATTATTATCTCCTTCCCAGATAATAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGATTACCTATCATTAAATTATTATCTCCTTCCCAGATAATAAGG  300

seq1  AAGTCTAGCCACATGGTACCTTTTTATTGAACAAGATGACTTTTCAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAGCCACATGGTACCTTTTTATTGAACAAGATGACTTTTCAGAAT  350

seq1  ATTTCTTGATACTTCCTGTCTATTCGTGAAGTTAATCTGTTTACAAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGATACTTCCTGTCTATTCGTGAAGTTAATCTGTTTACAAGTTA  400

seq1  CTCTTAAAATAGTTTTAGGTGCAGATTTATTTATTTATTTTTGGTACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAAATAGTTTTAGGTGCAGATTTATTTATTTATTTTTGGTACAAA  450

seq1  TTCAGGATTCCTAACAGCACATGTTGTAGTTGTTTTCTCATTAACCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATTCCTAACAGCACATGTTGTAGTTGTTTTCTCATTAACCAACA  500

seq1  GCATTGTTAATTAAAACAGTGACCTATTTCTAATTTACAAGCTGTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTTAATTAAAACAGTGACCTATTTCTAATTTACAAGCTGTCTGCT  550

seq1  GTGACTATTAGTTACTTCTTTCTTGTTTTTCTGCTGTCAAATAGCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTATTAGTTACTTCTTTCTTGTTTTTCTGCTGTCAAATAGCTGTGT  600

seq1  GTGTGTGTGCGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTT  650