BAC Information

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BAC

Clone NameB6Ng01-223N20
Chromosome1 (Build37)
Map Location 37,690,411 - 37,804,896
singlet/doubletdoublet
Overlap gene2010300C02Rik
Upstream geneBC050210, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a
Downstream geneTsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223N20.bB6Ng01-223N20.g
ACCGA038491GA038492
length1,0911,124
definitionB6Ng01-223N20.b B6Ng01-223N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,803,804 - 37,804,896)(37,690,411 - 37,691,527)
sequence
gaattcaaatgtcccaaatgatgttatttccttattctaatataattcta
tccttgttctcttcttttctgttattgtcaaatatgctgcacatctatct
cacacaagactaattaatactattatatgcatatcctttcatataatggc
tctccaaagacagtcaagacagtaagaaagaatcaacttggcactgcctt
gtgtaattagctaagtagttactttactggacctctgttttcatgcgtgg
atttgagggactctcacgttgattccatttgtcctaaagaaattcctcta
gcatttctcctaaagacggcttgtcattagcaatttgtcttcattcgtgg
gaactggaagatctgtttctcgcttttgagaaatggaactccaggccagt
ggtgtgttccttctagctttttaagcatgccatcccattgccttctggcc
tctatcgtttctgttagaagtaagctgttcctctcctgagggtcttagga
ggctcctcggaagtcagaggctgcagacagttctcacaggatgtagttat
ttcaagagagggtgatacaagagagcccaactgggccctgaattgctcat
aacattcattcccacaggtcatgttcttctgccatgacatacaacccatt
gatcatgaaggaatgcaataaagggacccctaccaaaacagcatcatgct
cttcagacattaaacctccaaatgtgatccaaatagacctctttataaaa
tcactggctactcacatcaggctgttcctcattgtcctcaagtgccgagt
tccccctctcttctctgtgcacacatccttctgcttctctttctcatcca
cctcactaccacttattcattcatcttagtggtacccaggggccctctag
ctatctggggtggtctctggagtgctattccatgcccatgagatgtggca
ccaggcaggggtcatctcgaatggtgtctgcccacctgggctgcatgatg
ctgggctggggcagagtctgcccttcctgggccctgtggcactggaccag
tgcaattattaatctttaaacatggttatttagttcctaga
gaattctctcagaaataaacctatttcctagtcctacccagtagtggtct
agaagacactatagctgagtagccatcctggccaccacacccatgccgtg
atctccaaggcaagttctctctgacaggaaggaaacacagcttgtgaaaa
agatccaagccaggaagcatacagcactgaactgggacgtctccctgtgc
aggaaagcaaggaacctttcagcaatggctgggctcacgaccaaagagag
ggaagctaatcagaaggaagtcttcacatcgcaagatgagacaatgaata
aagactgttatggactaaggcacaccaaatatattcgaaatcagagtgtt
tggggtcgatgtgtatggagctgggttggtagagtgcccagctaatatgc
acaaagcccaatgttccttctggagtaccgcatgggattgggtgtggtgg
cttacacttataatcccaacactctgaagatggagggatggttgaagtgc
agggttgtccttgactatacagtgaatttgaggccagtctaggttacata
gaattctgtgtaaataaagcaaaatttaaaaaatttaaaaaatacaatgt
tcacaatgatcttttagagggaaaaaaaaacttttttttttttttttggt
cacagttaggtgtggcagtgtcagggactactctgggagcagacaccact
cgaacaccaaccaagcattagtttgttttccctgaacagcttgtacttca
ggctctcatgaagttgacaaaggaaagctattttaaaaaaaattttagat
ttatttaatttacacacatgtggagggtttgcctacatagatggatagca
catgcatgcctgggtgcctgaaggagatcagaggaacatcgggatctctt
ggaactgaagttacagattggcttatgagccaccattgaaggttgttagg
aactgaaccccaatctctcttcaagagtaacaagtgctcttaactgctga
gccattctccctgctctgaataaatggaagtcttcctagaagaaaccagc
catggtgcaatgacagagtatcaagaatcccacaggttttgcactgagga
atggacccatctcacatgttaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_37803804_37804896
seq2: B6Ng01-223N20.b_46_1136 (reverse)

seq1  TCTAGGAACTAAAATAAACCATGTTTAAAGAATTATAATTGGCACTGGGT  50
      |||||||||||||   ||||||||||||||| | |||||| ||||| |||
seq2  TCTAGGAACTAAA--TAACCATGTTTAAAGATTAATAATT-GCACT-GGT  46

seq1  CCAGTGCCACAGGGCCCAGG-AGGGCAGACTCTGCCCCAGCCCAGCATCA  99
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAGTGCCACAGGGCCCAGGAAGGGCAGACTCTGCCCCAGCCCAGCATCA  96

seq1  TGCAGCCCAGGTGGGCAGACCACATTCGAGATGACCCCTGCCTGGTGCCA  149
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  TGCAGCCCAGGTGGGCAGACACCATTCGAGATGACCCCTGCCTGGTGCCA  146

seq1  CATCTCATGGGCATGGAATAGCACTCCAGAGACCACCCCAGATAGCTAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATGGGCATGGAATAGCACTCCAGAGACCACCCCAGATAGCTAGA  196

seq1  -GGCCCCTGGGTACCACTAAGATGAATGAATAAGTGGTAGTGAGGTGGAT  248
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCTGGGTACCACTAAGATGAATGAATAAGTGGTAGTGAGGTGGAT  246

seq1  GAGAAAGAGAAGCAGAAGGATGTGTGCACAGAGAAGAGAGGGGGAACTCG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGAAGCAGAAGGATGTGTGCACAGAGAAGAGAGGGGGAACTCG  296

seq1  GCACTTGAGGACAATGAGGAACAGCCTGATGTGAGTAGCCAGTGATTTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGAGGACAATGAGGAACAGCCTGATGTGAGTAGCCAGTGATTTTA  346

seq1  TAAAGAGGTCTATTTGGATCACATTTGGAGGTTTAATGTCTGAAGAGCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGGTCTATTTGGATCACATTTGGAGGTTTAATGTCTGAAGAGCAT  396

seq1  GATGCTGTTTTGGTAGGGGTCCCTTTATTGCATTCCTTCATGATCAATGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTTTTGGTAGGGGTCCCTTTATTGCATTCCTTCATGATCAATGG  446

seq1  GTTGTATGTCATGGCAGAAGAACATGACCTGTGGGAATGAATGTTATGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATGTCATGGCAGAAGAACATGACCTGTGGGAATGAATGTTATGAG  496

seq1  CAATTCAGGGCCCAGTTGGGCTCTCTTGTATCACCCTCTCTTGAAATAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAGGGCCCAGTTGGGCTCTCTTGTATCACCCTCTCTTGAAATAAC  546

seq1  TACATCCTGTGAGAACTGTCTGCAGCCTCTGACTTCCGAGGAGCCTCCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCTGTGAGAACTGTCTGCAGCCTCTGACTTCCGAGGAGCCTCCTA  596

seq1  AGACCCTCAGGAGAGGAACAGCTTACTTCTAACAGAAACGATAGAGGCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTCAGGAGAGGAACAGCTTACTTCTAACAGAAACGATAGAGGCCA  646

seq1  GAAGGCAATGGGATGGCATGCTTAAAAAGCTAGAAGGAACACACCACTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAATGGGATGGCATGCTTAAAAAGCTAGAAGGAACACACCACTGG  696

seq1  CCTGGAGTTCCATTTCTCAAAAGCGAGAAACAGATCTTCCAGTTCCCACG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGTTCCATTTCTCAAAAGCGAGAAACAGATCTTCCAGTTCCCACG  746

seq1  AATGAAGACAAATTGCTAATGACAAGCCGTCTTTAGGAGAAATGCTAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGACAAATTGCTAATGACAAGCCGTCTTTAGGAGAAATGCTAGAG  796

seq1  GAATTTCTTTAGGACAAATGGAATCAACGTGAGAGTCCCTCAAATCCACG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTTTAGGACAAATGGAATCAACGTGAGAGTCCCTCAAATCCACG  846

seq1  CATGAAAACAGAGGTCCAGTAAAGTAACTACTTAGCTAATTACACAAGGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAACAGAGGTCCAGTAAAGTAACTACTTAGCTAATTACACAAGGC  896

seq1  AGTGCCAAGTTGATTCTTTCTTACTGTCTTGACTGTCTTTGGAGAGCCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAAGTTGATTCTTTCTTACTGTCTTGACTGTCTTTGGAGAGCCAT  946

seq1  TATATGAAAGGATATGCATATAATAGTATTAATTAGTCTTGTGTGAGATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAAAGGATATGCATATAATAGTATTAATTAGTCTTGTGTGAGATA  996

seq1  GATGTGCAGCATATTTGACAATAACAGAAAAGAAGAGAACAAGGATAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCAGCATATTTGACAATAACAGAAAAGAAGAGAACAAGGATAGAA  1046

seq1  TTATATTAGAATAAGGAAATAACATCATTTGGGACATTTGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAGAATAAGGAAATAACATCATTTGGGACATTTGAATTC  1091

seq1: chr1_37690411_37691527
seq2: B6Ng01-223N20.g_69_1192

seq1  GAATTCTCTCAGAAATAAACCTATTTCCTAGTCCTACCCAGTAGTGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGAAATAAACCTATTTCCTAGTCCTACCCAGTAGTGGTCT  50

seq1  AGAAGACACTATAGCTGAGTAGCCATCCTGGCCACCACACCCATGCCGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACACTATAGCTGAGTAGCCATCCTGGCCACCACACCCATGCCGTG  100

seq1  ATCTCCAAGGCAAGTTCTCTCTGACAGGAAGGAAACACAGCTTGTGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAAGGCAAGTTCTCTCTGACAGGAAGGAAACACAGCTTGTGAAAA  150

seq1  AGATCCAAGCCAGGAAGCATACAGCACTGAACTGGGACGTCTCCCTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAAGCCAGGAAGCATACAGCACTGAACTGGGACGTCTCCCTGTGC  200

seq1  AGGAAAGCAAGGAACCTTTCAGCAATGGCTGGGCTCACGACCAAAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCAAGGAACCTTTCAGCAATGGCTGGGCTCACGACCAAAGAGAG  250

seq1  GGAAGCTAATCAGAAGGAAGTCTTCACATCGCAAGATGAGACAATGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTAATCAGAAGGAAGTCTTCACATCGCAAGATGAGACAATGAATA  300

seq1  AAGACTGTTATGGACTAAGGCACACCAAATATATTCGAAATCAGAGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTTATGGACTAAGGCACACCAAATATATTCGAAATCAGAGTGTT  350

seq1  TGGGGTCGATGTGTATGGAGCTGGGTTGGTAGAGTGCCCAGCTAATATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCGATGTGTATGGAGCTGGGTTGGTAGAGTGCCCAGCTAATATGC  400

seq1  ACAAAGCCCAATGTTCCTTCTGGAGTACCGCATGGGATTGGGTGTGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCCAATGTTCCTTCTGGAGTACCGCATGGGATTGGGTGTGGTGG  450

seq1  CTTACACTTATAATCCCAACACTCTGAAGATGGAGGGATGGTTGAAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACTTATAATCCCAACACTCTGAAGATGGAGGGATGGTTGAAGTGC  500

seq1  AGGGTTGTCCTTGACTATACAGTGAATTTGAGGCCAGTCTAGGTTACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGTCCTTGACTATACAGTGAATTTGAGGCCAGTCTAGGTTACATA  550

seq1  GAATTCTGTGTAAATAAAGCAAAATTTAAAAAATTTAAAAAATACAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTAAATAAAGCAAAATTTAAAAAATTTAAAAAATACAATGT  600

seq1  TCACAATGATCTTTTAGAGGGAAAAAAAAACTTTTTTTTTTTTTTTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGATCTTTTAGAGGGAAAAAAAAACTTTTTTTTTTTTTTTTGGT  650

seq1  CACAGTTAGGTGTGGCAGTGTCAGGGACTACTCTGGGAGCAGACACCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTAGGTGTGGCAGTGTCAGGGACTACTCTGGGAGCAGACACCACT  700

seq1  CGAACACCAACCAAGCATTAGTTTGTTTTCCCTGAACAGCTTGTACTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACACCAACCAAGCATTAGTTTGTTTTCCCTGAACAGCTTGTACTTCA  750

seq1  GGCTCTCATGAAGTTGACAAAGGAAAGCTATTTTAAAAAAAATTTTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCATGAAGTTGACAAAGGAAAGCTATTTTAAAAAAAATTTTAGAT  800

seq1  TTATTTAATTTACACACATGT-GAGGGTTTGCCTACATAGATGGATAGCA  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTATTTAATTTACACACATGTGGAGGGTTTGCCTACATAGATGGATAGCA  850

seq1  CATGCATGCCT-GGTGCCTG-AGGAGATCAGAGG-ACATC-GGATCTCTT  895
      ||||||||||| |||||||| ||||||||||||| ||||| |||||||||
seq2  CATGCATGCCTGGGTGCCTGAAGGAGATCAGAGGAACATCGGGATCTCTT  900

seq1  GGAACTGAAGTTACAGA-TGGC-TATGAGCCACCA-TGAAGG-TGTTAGG  941
      ||||||||||||||||| |||| |||||||||||| |||||| |||||||
seq2  GGAACTGAAGTTACAGATTGGCTTATGAGCCACCATTGAAGGTTGTTAGG  950

seq1  AACTGAACCCAGATCT-TCTTCAAGAGTAACAAGTGCTCTTAACTGCTGA  990
      ||||||||||  |||| |||||||||||||||||||||||||||||||||
seq2  AACTGAACCCCAATCTCTCTTCAAGAGTAACAAGTGCTCTTAACTGCTGA  1000

seq1  GCCATCTCT-CCTGCTCCTGATAAAGGAAAGTTCTTCATAGAAGAAACCC  1039
      ||||| ||| |||||||   ||||| | ||| ||||| ||||||||| ||
seq2  GCCAT-TCTCCCTGCTCTGAATAAATGGAAG-TCTTCCTAGAAGAAA-CC  1047

seq1  AGCAATGTGTAAAATGAACAGAGGAATTAGAAACCCACAGTTTTTGCACT  1089
      ||| ||| ||  |||| |||||| |   |||| ||||||| |||||||||
seq2  AGCCATG-GTGCAATG-ACAGAGTATCAAGAATCCCACAGGTTTTGCACT  1095

seq1  GAGGAAATGGA-CCATCT-ACATGTTAAGG  1117
      |||| |||||| |||||| |||||||||||
seq2  GAGG-AATGGACCCATCTCACATGTTAAGG  1124