BAC Information

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BAC

Clone NameB6Ng01-224A08
Chromosome1 (Build37)
Map Location 35,601,965 - 35,769,145
singlet/doubletdoublet
Overlap genenone
Upstream geneTesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
Downstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224A08.bB6Ng01-224A08.g
ACCGA038603GA038604
length1,1971,025
definitionB6Ng01-224A08.b B6Ng01-224A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,767,936 - 35,769,145)(35,601,965 - 35,602,981)
sequence
gaattctcttggaaacatttcactgcagcctccatccgcatccctcaaca
caacagcacagggactcagcacagagacaagtagggtcagcaaaatggct
taactagaaatctacaaggcacttaccaggaacaacagcaaccacaaacc
caccatgaaagttgtgactgatcaactcaagaaactacagcagggcatgg
tcacaaaaacaaaggtaatgcagtaatactggacaaagtatagtttagat
tttttagggttggaataagccttcctgttatttctggagtggagccagga
agccaggcagtagccattctgggggtaatatatataggagctcacagaag
ccaccaatagtctcagctcccatcaccccctgcttcaggacattgcaggt
caagaattataattatttggaaagaaccgtacatcagccatttgttcagt
aaaagcagtttgttgacgcactcaacagaaccagatgaaattacagacta
caatctgaagctataatgcatgcgttagcatatttcacccagaaatgaaa
tgatacagcaatgtctgttaaagatttgaagatgatttgttggagtctaa
gtttttgtgacaggctatgtaaaaatatgtatttgaatctaagagaaaat
ccacactgtgttttaaagtcataaatcacaaaatgtttgcaaaattgaac
atttgtaccacttgaacacttaaaaaaaaaccaaagcaactcagcagttt
ttaaaattcagaactacagactatttgatttttaccaaagttcattatga
ttagaaatgagctgaagataatgtacaaaaatatttatcatctggtatta
agaaagatataaagctaaaattacaaaccaaatgtggattggatctcaga
aaaacatgtggaatctaacaaaatgggaaatgtagaggaaaagtcaaagt
cttagttgtatttattagaatataaaaaaatactgaaaatacatgtgtac
caactgaatgaaataaacacaaatgtaaacagttttatcagaaaaataat
taaggatagaaatatgtaatagagccagataaatatcttactgtgatatt
aaacatattgcttattgatgacattacgaaggacaattagttgtcactgc
atcttgaattgcaatgaaatggagattctagtcaatatttttccctt
gaattcttggcccataggcatggcagtattaggaggtgtgatccattagg
aggtatgaagtaggtgtgactttgttggaggaagtgggctctgtgggggc
aggtgttgaggtctaatatgctcaagctatgcccagagtggcacagtctc
cttctgttgcctggggaatgaagtgtagaactcctagctccttctccagc
gccatgtctgcctgcacaccaccaggtttcctagcatgatgataatggac
taaacctcagaaactgatccattcccaaattaagtgttttcctttataaa
acttgccatagccatggtgtctcttcacagctgtagaaagctgacctaag
acaacaaacaagaaaagaaagaaagaaaagagaagaaaaaataggataca
aggttggaagatttagataaaagacagtttcttagaaatatccaacaagt
ttacatatttgccaacaattgctacaaaatggctattctgtttcccaaag
tcccctagagttcacatcgatggtcgtgtctataaggtcctcaaaggggc
caaaagcagtacccatcacagttacattgattaaaaattaggggctcagt
tgtaccagttaaggtcatatttggtcaaaataaattttaaaaaaaatatt
tggcccattgaaaaatggacatttttcattttattgacctggtcctctga
caacattgaagggcattggaggcctgctgctccatctgccttccacccta
ctgcacctgatcttggaagcatccaaactgtagaatttgagattcaagtg
ttggcctatatataccgagccatttcttgtcttcatctttctgtacctgt
taagttatttcaagtgtctttctgtgcttttatattttgaaattgattaa
gtagatgaccataggaaaggatatgaccactcccctcttcccacctgtac
ctttcatacccacccctgccttacaatacctttctgtccctgctgaaatc
tcaggattctgggccaccaccatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_35767936_35769145
seq2: B6Ng01-224A08.b_45_1241 (reverse)

seq1  AAGGGAAAATATTTGTACTTAGAAACTCTCATTTCATTACAAT--CAGAT  48
      ||||||||| || |  || ||||| ||| ||||||||| ||||   ||||
seq2  AAGGGAAAA-ATATTGAC-TAGAATCTC-CATTTCATTGCAATTCAAGAT  47

seq1  GCAAGTTGACCAACTTTATTGTCCTTCGTAAATGTCATCAAT-AGCATTA  97
      |||   ||| |||| | |||||||||||| |||||||||||| |||| ||
seq2  GCA--GTGA-CAAC-TAATTGTCCTTCGT-AATGTCATCAATAAGCAATA  92

seq1  TGTTTTAATAATTCACAGT-AGATATTTTATCTGGCTCTATTACATTAAT  146
      || |||||||  ||||||| ||||| ||||||||||||||||||||  ||
seq2  TG-TTTAATA--TCACAGTAAGATA-TTTATCTGGCTCTATTACAT--AT  136

seq1  TTCTATCCTTTAATTTATTTTTCCTGATAAAACTGTTTACATTTGTGTTT  196
      ||||||||||  | |||||||| |||||||||||||||||||||||||||
seq2  TTCTATCCTT--AATTATTTTT-CTGATAAAACTGTTTACATTTGTGTTT  183

seq1  ATTTCATTCAGTTGGGTACACATGTATTTTCAGTA-TTTTTTATATTCTA  245
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  ATTTCATTCAGTT-GGTACACATGTATTTTCAGTATTTTTTTATATTCTA  232

seq1  ATAAATACAACTAAGACTTTGACTTTTCCTCTACATTTCCATTTTTGTTA  295
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  ATAAATACAACTAAGACTTTGACTTTTCCTCTACATTTCCCATTTTGTTA  282

seq1  GATTCCACATGTTTTTCTGAGATCCAATCCACATTTGGTTTGTAATTTTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCACATGTTTTTCTGAGATCCAATCCACATTTGGTTTGTAATTTTA  332

seq1  GCTTTATATCTTTCTTAATACCAGATGATAAATATTTTTGTACATTATCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATATCTTTCTTAATACCAGATGATAAATATTTTTGTACATTATCT  382

seq1  TCAGCTCATTTCTAATCATAATGAACTTTGGTAAAAATCAAATAGTCTGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCATTTCTAATCATAATGAACTTTGGTAAAAATCAAATAGTCTGT  432

seq1  AGTTCTGAATTTTAAAAACTGCTGAGTTGCTTTGGTTTTTTTTTAAGTGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAATTTTAAAAACTGCTGAGTTGCTTTGGTTTTTTTTTAAGTGT  482

seq1  TCAAGTGGTACAAATGTTCAATTTTGCAAACATTTTGTGATTTATGACTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGGTACAAATGTTCAATTTTGCAAACATTTTGTGATTTATGACTT  532

seq1  TAAAACACAGTGTGGATTTTCTCTTAGATTCAAATACATATTTTTACATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACAGTGTGGATTTTCTCTTAGATTCAAATACATATTTTTACATA  582

seq1  GCCTGTCACAAAAACTTAGACTCCAACAAATCATCTTCAAATCTTTAACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCACAAAAACTTAGACTCCAACAAATCATCTTCAAATCTTTAACA  632

seq1  GACATTGCTGTATCATTTCATTTCTGGGTGAAATATGCTAACGCATGCAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGCTGTATCATTTCATTTCTGGGTGAAATATGCTAACGCATGCAT  682

seq1  TATAGCTTCAGATTGTAGTCTGTAATTTCATCTGGTTCTGTTGAGTGCGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTTCAGATTGTAGTCTGTAATTTCATCTGGTTCTGTTGAGTGCGT  732

seq1  CAACAAACTGCTTTTACTGAACAAATGGCTGATGTACGGTTCTTTCCAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACTGCTTTTACTGAACAAATGGCTGATGTACGGTTCTTTCCAAA  782

seq1  TAATTATAATTCTTGACCTGCAATGTCCTGAAGCAGGGGGTGATGGGAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAATTCTTGACCTGCAATGTCCTGAAGCAGGGGGTGATGGGAGC  832

seq1  TGAGACTATTGGTGGCTTCTGTGAGCTCCTATATATATTACCCCCAGAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTATTGGTGGCTTCTGTGAGCTCCTATATATATTACCCCCAGAAT  882

seq1  GGCTACTGCCTGGCTTCCTGGCTCCACTCCAGAAATAACAGGAAGGCTTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTGCCTGGCTTCCTGGCTCCACTCCAGAAATAACAGGAAGGCTTA  932

seq1  TTCCAACCCTAAAAAATCTAAACTATACTTTGTCCAGTATTACTGCATTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACCCTAAAAAATCTAAACTATACTTTGTCCAGTATTACTGCATTA  982

seq1  CCTTTGTTTTTGTGACCATGCCCTGCTGTAGTTTCTTGAGTTGATCAGTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTTTTGTGACCATGCCCTGCTGTAGTTTCTTGAGTTGATCAGTC  1032

seq1  ACAACTTTCATGGTGGGTTTGTGGTTGCTGTTGTTCCTGGTAAGTGCCTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTCATGGTGGGTTTGTGGTTGCTGTTGTTCCTGGTAAGTGCCTT  1082

seq1  GTAGATTTCTAGTTAAGCCATTTTGCTGACCCTACTTGTCTCTGTGCTGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTTCTAGTTAAGCCATTTTGCTGACCCTACTTGTCTCTGTGCTGA  1132

seq1  GTCCCTGTGCTGTTGTGTTGAGGGATGCGGATGGAGGCTGCAGTGAAATG  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTGCTGTTGTGTTGAGGGATGCGGATGGAGGCTGCAGTGAAATG  1182

seq1  TTTCCAAGAGAATTC  1210
      |||||||||||||||
seq2  TTTCCAAGAGAATTC  1197

seq1: chr1_35601965_35602981
seq2: B6Ng01-224A08.g_67_1091

seq1  GAATTCTTGGCCCATAGGCATGGCAGTATTAGGAGGTGTGATCCATTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCCCATAGGCATGGCAGTATTAGGAGGTGTGATCCATTAGG  50

seq1  AGGTATGAAGTAGGTGTGACTTTGTTGGAGGAAGTGGGCTCTGTGGGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGAAGTAGGTGTGACTTTGTTGGAGGAAGTGGGCTCTGTGGGGGC  100

seq1  AGGTGTTGAGGTCTAATATGCTCAAGCTATGCCCAGAGTGGCACAGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTGAGGTCTAATATGCTCAAGCTATGCCCAGAGTGGCACAGTCTC  150

seq1  CTTCTGTTGCCTGGGGAATGAAGTGTAGAACTCCTAGCTCCTTCTCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTGCCTGGGGAATGAAGTGTAGAACTCCTAGCTCCTTCTCCAGC  200

seq1  GCCATGTCTGCCTGCACACCACCAGGTTTCCTAGCATGATGATAATGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTCTGCCTGCACACCACCAGGTTTCCTAGCATGATGATAATGGAC  250

seq1  TAAACCTCAGAAACTGATCCATTCCCAAATTAAGTGTTTTCCTTTATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTCAGAAACTGATCCATTCCCAAATTAAGTGTTTTCCTTTATAAA  300

seq1  ACTTGCCATAGCCATGGTGTCTCTTCACAGCTGTAGAAAGCTGACCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCATAGCCATGGTGTCTCTTCACAGCTGTAGAAAGCTGACCTAAG  350

seq1  ACAACAAACAAGAAAAGAAAGAAAGAAAAGAGAAGAAAAAATAGGATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAACAAGAAAAGAAAGAAAGAAAAGAGAAGAAAAAATAGGATACA  400

seq1  AGGTTGGAAGATTTAGATAAAAGACAGTTTCTTAGAAATATCCAACAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGAAGATTTAGATAAAAGACAGTTTCTTAGAAATATCCAACAAGT  450

seq1  TTACATATTTGCCAACAATTGCTACAAAATGGCTATTCTGTTTCCCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATTTGCCAACAATTGCTACAAAATGGCTATTCTGTTTCCCAAAG  500

seq1  TCCCCTAGAGTTCACATCGATGGTCGTGTCTATAAGGTCCTCAAAGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAGAGTTCACATCGATGGTCGTGTCTATAAGGTCCTCAAAGGGGC  550

seq1  CAAAAGCAGTACCCATCACAGTTACATTGATTAAAAATTAGGGGCTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAGTACCCATCACAGTTACATTGATTAAAAATTAGGGGCTCAGT  600

seq1  TGTACCAGTTAAGGTCATATTTGGTCAAAATAAATTTT-AAAAAAATATT  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTACCAGTTAAGGTCATATTTGGTCAAAATAAATTTTAAAAAAAATATT  650

seq1  TGGCCCATTGAAAAATGGACATTTTTCATTTTATTGACCTGGTCCTCTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCATTGAAAAATGGACATTTTTCATTTTATTGACCTGGTCCTCTGA  700

seq1  CAACATTGAAGGGCATTGGAGGCCTGCTGCTCCATCTGCCTTCCACCCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTGAAGGGCATTGGAGGCCTGCTGCTCCATCTGCCTTCCACCCTA  750

seq1  CTGCACCTGATCTTGGAAGCATCCAAACTGTAGAATTTGAGATTCAAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCTGATCTTGGAAGCATCCAAACTGTAGAATTTGAGATTCAAGTG  800

seq1  TTGGCCTATATATACCGAGCCATTTCTTGTCTTCATCTTTCTGTACCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTATATATACCGAGCCATTTCTTGTCTTCATCTTTCTGTACCTGT  850

seq1  TAAGTTATTTCAAGTGTCTTTCTGTGCTTTTATATTTTGAAATTGATTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATTTCAAGTGTCTTTCTGTGCTTTTATATTTTGAAATTGATTAA  900

seq1  GTAGATGACCATAGG-AAGGATATGACCACTCCCCTCTTCCCACCTGTAC  948
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTAGATGACCATAGGAAAGGATATGACCACTCCCCTCTTCCCACCTGTAC  950

seq1  C-TTCATA-CCACCCCTGCCTACCAATACC-TTCTGT-CCTGCTGAAATC  994
      | |||||| ||||||||||||  ||||||| |||||| ||||||||||||
seq2  CTTTCATACCCACCCCTGCCTTACAATACCTTTCTGTCCCTGCTGAAATC  1000

seq1  TCAGGATTCT-GGCCACCA-CATCA  1017
      |||||||||| |||||||| |||||
seq2  TCAGGATTCTGGGCCACCACCATCA  1025