BAC Information

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BAC

Clone NameB6Ng01-224B24
Chromosome1 (Build37)
Map Location 42,225,055 - 42,225,987
singlet/doubletsinglet
Overlap geneLOC666582
Upstream geneLOC100041441, LOC383634
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224B24.bB6Ng01-224B24.g
ACCGA038675GA038676
length9391,234
definitionB6Ng01-224B24.b B6Ng01-224B24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgctagctcatgactagaaaatacatttttttgcatgtgtgtg
tgtgatggaaatggaaagaaaagtagaaaaaaatgaacttcaaaaggttt
gtgggtgtggaaacactttagtatggatcttgatagggaaattattggta
tgcacataagatggaagctttcctttacaaaacatgacttaatcgccaac
ctgggacagtggctgttatagaagatggcatctcataccaagacattcat
tttctctcctccttgattaggagcattttcctcaattacaagagcaccca
ggtggtgtctgtagctcatttctctgaaatgaaataactaatcctggtca
accacccagtttgaattcctgccaactcaaggatagcagggtctaagtcc
catagcctaaagtctgtatctaacagatatctggaagctatcctacaatg
agtgcgttctgaccacctgcgctccaactagagattctctcagggctttg
cttagtgcttggtctgcctgggatcttctaaggatttgcccagactctaa
ggcagataaagctgttagaccacccttcatggttacttggaagcaaacca
agtagttaaagattaaagtgttacttggaaggggtgaagttgaagaagct
ttgtaggtcttcagcataattgaattccaactgctcctgagcatcaatag
accttgtgaactcctgaacagccagcagtatgcctcagcagttatgaatg
atcgtgaaaggagccacctctgttgagtaagacattagacagaggaagtc
tgatacagcaatccagatggactcagaatatgaaaggggtggggggtgga
gttgagtaattctccttaatgacctggaaaaatcaagtcagaataccatt
taggtctttatttgaagaaataagtttagaaaaggtgtt
gaattctgcattaaatgtatttagccctggtatttattttaattgggaca
tttttaatcacagcttctataccataggttaaaatggagtccatttttat
tattcagttcatctatatctcactctggtaggttgtaaaactataaattc
atccgtttcttttatgtttttcattttggtagcatggggatttttaaagt
tactttcttgatcattctcttatttccttggtatcttttgtaatgtctct
catgtcacttctaattgtgttgattctgattatcacacttactttttctc
agtttggctaagtttacatatctcgctagccttctgaaaataccaattct
ctgtttatttgattattttgtggtttttatacattgaattcaacatcatt
ttgatgatctctttctttatccccttagagatgttgattcttcttgtttt
ttctaagaacttcagatatatcatgctattaattggaaatctcccaacat
ttttatatatatacaaccttcttctaccttttcccaaacattttgatatt
gtatgctttcattttaattcaattctagaaatctttaatttcctttttga
tttcttccttcacatgattttggctgaatattgtgacattttgctccatg
aatctttctgctttatatctttttattgttttgatgactagccttgattc
atggttattagatagaatattattttgaattttcctttatttctttcatg
tactactatgtaatctactttgggaaaagtctgtgggatactgacaatag
gtattcttttgtgattaggtggaatattccatagataatctgttagatct
ccattgatttcctaatgtgttttagtgctaaaattttttctatttattgt
tttaagttgatttgtgggtttttgaatccacctattaccactatgctggg
ccattatgtagttttaacttctaatgggggttcttttatggaaactgcaa
tccttcctatgttgatgcattattttgtttatatttgcacctatcctcgt
tatttattttttaattctttagtggacctaaaataattccttactctctt
tctgatttaagtcttatttaagttcagatttttttaagccattataaaag
cctttcactcctgcttatttccgcttccaatgccatgagtagataccaaa
ctaaggcaacacactactaatcctctatcttatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42225055_42225987
seq2: B6Ng01-224B24.b_51_989 (reverse)

seq1  AACACC-TTTCTTAACTT-CTTCTTCAAAT-AAGCACTAAATGGTTATCT  47
      |||||| ||||| |||||  |||||||||| |||  |||||||||  |||
seq2  AACACCTTTTCTAAACTTATTTCTTCAAATAAAGACCTAAATGGTATTCT  50

seq1  GACTTG-TATCTCCAGGTCA-TAAAGAGAATTACTCAACTCCA-CCCCCA  94
      |||||| | | ||||||||| ||| |||||||||||||||||| ||||||
seq2  GACTTGATTTTTCCAGGTCATTAAGGAGAATTACTCAACTCCACCCCCCA  100

seq1  CCCCTTTCATATTCTGAGTCCATCTGGATTGCTGTATCAGACTTCCTCTG  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCATATTCTGAGTCCATCTGGATTGCTGTATCAGACTTCCTCTG  150

seq1  TCTAATGTCTTACTCAACAGAGGTGGCTCCTTTCACGATCATTCATAACT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTCTTACTCAACAGAGGTGGCTCCTTTCACGATCATTCATAACT  200

seq1  GCTGAGGCATACTGCTGGCTGTTCAGGAGTTCACAAGGTCTATTGATGCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGCATACTGCTGGCTGTTCAGGAGTTCACAAGGTCTATTGATGCT  250

seq1  CAGGAGCAGTTGGAATTCAATTATGCTGAAGACCTACAAAGCTTCTTCAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCAGTTGGAATTCAATTATGCTGAAGACCTACAAAGCTTCTTCAA  300

seq1  CTTCACCCCTTCCAAGTAACACTTTAATCTTTAACTACTTGGTTTGCTTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCCTTCCAAGTAACACTTTAATCTTTAACTACTTGGTTTGCTTC  350

seq1  CAAGTAACCATGAAGGGTGGTCTAACAGCTTTATCTGCCTTAGAGTCTGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAACCATGAAGGGTGGTCTAACAGCTTTATCTGCCTTAGAGTCTGG  400

seq1  GCAAATCCTTAGAAGATCCCAGGCAGACCAAGCACTAAGCAAAGCCCTGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCCTTAGAAGATCCCAGGCAGACCAAGCACTAAGCAAAGCCCTGA  450

seq1  GAGAATCTCTAGTTGGAGCGCAGGTGGTCAGAACGCACTCATTGTAGGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTCTAGTTGGAGCGCAGGTGGTCAGAACGCACTCATTGTAGGAT  500

seq1  AGCTTCCAGATATCTGTTAGATACAGACTTTAGGCTATGGGACTTAGACC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCAGATATCTGTTAGATACAGACTTTAGGCTATGGGACTTAGACC  550

seq1  CTGCTATCCTTGAGTTGGCAGGAATTCAAACTGGGTGGTTGACCAGGATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATCCTTGAGTTGGCAGGAATTCAAACTGGGTGGTTGACCAGGATT  600

seq1  AGTTATTTCATTTCAGAGAAATGAGCTACAGACACCACCTGGGTGCTCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTCATTTCAGAGAAATGAGCTACAGACACCACCTGGGTGCTCTT  650

seq1  GTAATTGAGGAAAATGCTCCTAATCAAGGAGGAGAGAAAATGAATGTCTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAGGAAAATGCTCCTAATCAAGGAGGAGAGAAAATGAATGTCTT  700

seq1  GGTATGAGATGCCATCTTCTATAACAGCCACTGTCCCAGGTTGGCGATTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAGATGCCATCTTCTATAACAGCCACTGTCCCAGGTTGGCGATTA  750

seq1  AGTCATGTTTTGTAAAGGAAAGCTTCCATCTTATGTGCATACCAATAATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTTTTGTAAAGGAAAGCTTCCATCTTATGTGCATACCAATAATT  800

seq1  TCCCTATCAAGATCCATACTAAAGTGTTTCCACACCCACAAACCTTTTGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATCAAGATCCATACTAAAGTGTTTCCACACCCACAAACCTTTTGA  850

seq1  AGTTCATTTTTTTCTACTTTTCTTTCCATTTCCATCACACACACACATGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTTTTTTCTACTTTTCTTTCCATTTCCATCACACACACACATGC  900

seq1  AAAAAAATGTATTTTCTAGTCATGAGCTAGCAGGAATTC  933
      |||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGTATTTTCTAGTCATGAGCTAGCAGGAATTC  939