BAC Information

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BAC

Clone NameB6Ng01-224D06
Chromosome1 (Build37)
Map Location 140,925,211 - 141,066,932
singlet/doubletdoublet
Overlap geneDennd1b
Upstream genePtprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623
Downstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224D06.bB6Ng01-224D06.g
ACCGA038731GA038732
length1,0521,117
definitionB6Ng01-224D06.b B6Ng01-224D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,925,211 - 140,926,082)(141,065,817 - 141,066,932)
sequence
gaattcctgaagacccgaggcagaaattggcatggaagctggattgtatt
agaattctatacgcctactcagtcctctcttcactttcaccctttaatac
ccagtttcaatttatcaggctcgttccaccctgctctgttctagtctgct
gtttagctcctttattcttctttttccttttcctgttttatagtctgcag
gatattgagatttgggacagtctaattgttatattagttttctgaattta
aacatctcttttgagggtttcaaatatacatccaagaaagacaatatgta
atctactttcctccatctaatgtgccccacctctaacttcattttttaaa
tttttgctctggccagctcactaagttgagctgcctattggtgcacgtgc
atgaggcagtccacaggagtgtgggaatcctattactcagtggtcacatc
ctcaaacaaaggtgattctccaccccccagcaactatccactgccaataa
catcagtaagaggccgggcctggggtaaccacagctgctgtgaatgcgtg
agagtgatagctatgccatgtctagaagacagtttttcatagcatttctt
cccatcttctggctcttatgctctttctgcttcctttttcaaagagtttg
ctgagctttggtgcacatgtgctttgtgcgcacatgtgtgtttgcgtgtg
tgtgcgcgcgtgcctgtgtgtgcttctgtgtgtgtgtgtttgtgtgtgtg
tgtgtgtgagtatacagctgtcccatttagggctgaacactcggtctctt
atgtgaaatacctttgatcttaacttttagctcactgcaaaaagaagctc
tctagaccaaggtttatgaacaactctagtttgtgaatataaatatttag
aagacagtttgataagcatgactattccaacagaatagaaatagcaaggc
tctaccctttgggcctatgacctttagaagccatgaaattcccttcctgt
ggagtaggcctcatatcaattcaaaaagcactttagttatcctaataaca
gt
gaattccacatgcctccggagaagccaagaggcaagcaactgacccacta
ctggtacctaagtttggtttccacttctgctttcttctgaaatgtttaaa
tcttgttggaagtcacatgacatgtgacacaatgacactacttcttggag
aagtccgacatcctttgaaggcttcgtgtcctctttgccagccttctccc
agggaacaaaagtcgactggcggctcccggggccgggcaccgacagatcc
tctgactgaagtggagcctgacctggtgtttgcttcacttctgctcttcc
tctctctgtttgggaagcttcaggagcagcaggctgggaacgcagtcctg
aagtcggagctggctttcccaccacagtagggccacttacgctgtcagca
cagaggggcttctccctgctctcctctttcaggataaacagagactctgt
cagcccaccagaggaaacgcgtttccttggggatggagggagttgcctgc
catggagggcgctgtcgtcctgcccgagattccactctccctggtctcca
gaagcacacagcagggccaggttattctcactgggagcgttggacttgtt
ctgggaagggaattacaacttcagaatacttacaataaaatggcagtgat
tctttagtggtgtctgctttgcaagcaaggtcaccatgcttcagcagggg
cctgagccccaccccaggggtaggggagcactgactgaatcctgacagtt
cctgcctgccccatgaagaggaatgatgggtgtcgggtggggactccaca
aactctggtttcaatgtgtttagattgtcacctgtcacagtcaaatccac
atagaacgtcctgttctccagtcagaatgggggtcccactgcacataaaa
ggtttattttgaagcactttagttcatttaaaacttgtttcactttttcg
aacaagaaatagaaaaatatttttagaacattattatttacagtgttttt
tttaagctcagagttttttataaaaataggaatgttcacataaaaatgtt
ttcacaaggtgaatgctaacctagacgtcactatgccagaaagggtcatc
actggtagcactcagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_140925211_140926082
seq2: B6Ng01-224D06.b_46_921

seq1  GAATTCCTGAAGACCCGAGGCAGAAATTGGCATGGAAGCTGGATTGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAAGACCCGAGGCAGAAATTGGCATGGAAGCTGGATTGTATT  50

seq1  AGAATTCTATACGCCTACTCAGTCCTCTCTTCACTTTCACCCTTTAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTATACGCCTACTCAGTCCTCTCTTCACTTTCACCCTTTAATAC  100

seq1  CCAGTTTCAATTTATCAGGCTCGTTCCACCCTGCTCTGTTCTAGTCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCAATTTATCAGGCTCGTTCCACCCTGCTCTGTTCTAGTCTGCT  150

seq1  GTTTAGCTCCTTTATTCTTCTTTTTCCTTTTCCTGTTTTATAGTCTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCTCCTTTATTCTTCTTTTTCCTTTTCCTGTTTTATAGTCTGCAG  200

seq1  GATATTGAGATTTGGGACAGTCTAATTGTTATATTAGTTTTCTGAATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGAGATTTGGGACAGTCTAATTGTTATATTAGTTTTCTGAATTTA  250

seq1  AACATCTCTTTTGAGGGTTTCAAATATACATCCAAGAAAGACAATATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTCTTTTGAGGGTTTCAAATATACATCCAAGAAAGACAATATGTA  300

seq1  ATCTACTTTCCTCCATCTAATGTGCCCCACCTCTAACTTCATTTTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTTCCTCCATCTAATGTGCCCCACCTCTAACTTCATTTTTTAAA  350

seq1  TTTTTGCTCTGGCCAGCTCACTAAGTTGAGCTGCCTATTGGTGCACGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTCTGGCCAGCTCACTAAGTTGAGCTGCCTATTGGTGCACGTGC  400

seq1  ATGAGGCAGTCCACAGGAGTGTGGGAATCCTATTACTCAGTGGTCACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCAGTCCACAGGAGTGTGGGAATCCTATTACTCAGTGGTCACATC  450

seq1  CTCAAACAAAGGTGATTCTCCACCCCCCAGCAACTATCCACTGCCAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACAAAGGTGATTCTCCACCCCCCAGCAACTATCCACTGCCAATAA  500

seq1  CATCAGTAAGAGGCCGGGCCTGGGGTAACCACAGCTGCTGTGAATGCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAAGAGGCCGGGCCTGGGGTAACCACAGCTGCTGTGAATGCGTG  550

seq1  AGAGTGATAGCTATGCCATGTCTAGAAGACAGTTTTTCATAGCATTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATAGCTATGCCATGTCTAGAAGACAGTTTTTCATAGCATTTCTT  600

seq1  CCCATCTTCTGGCTCTTATGCTCTTTCTGCTTCCTTTTTCAAAGAGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTCTGGCTCTTATGCTCTTTCTGCTTCCTTTTTCAAAGAGTTTG  650

seq1  CTGAGCTTTGGTGCACATGTGCTTTGTGCGCACATGTGTGTTTGCGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTTGGTGCACATGTGCTTTGTGCGCACATGTGTGTTTGCGTGTG  700

seq1  TGTGCGCGCGTGCCTGTGTGTGCTTCTGTGTGTGTGTGTTTGTGTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGCGCGTGCCTGTGTGTGCTTCTGTGTGTGTGTGTTTGTGTGTGTG  750

seq1  TGTGTGTGAGTATACAGCTGTCCCATTTAGGGCTGAACACTCGGTCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGAGTATACAGCTGTCCCATTTAGGGCTGAACACTCGGTCTCTT  800

seq1  ATGTGAAATACC-TTGATCTTAAC-TTTAGCTCACTGCAAAAAGAAGCTC  848
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  ATGTGAAATACCTTTGATCTTAACTTTTAGCTCACTGCAAAAAGAAGCTC  850

seq1  TCTAGA-CAAGG-TTATGAACAACTC  872
      |||||| ||||| |||||||||||||
seq2  TCTAGACCAAGGTTTATGAACAACTC  876

seq1: chr1_141065817_141066932
seq2: B6Ng01-224D06.g_67_1183 (reverse)

seq1  CTCTG-GTGCTACCCAGTGATGCCCCTTTCTGGGCATAGTGACGTCTAGT  49
      ||||| |||||| ||||||||| |||||||| ||||||||||||||||| 
seq2  CTCTGAGTGCTA-CCAGTGATGACCCTTTCT-GGCATAGTGACGTCTAGG  48

seq1  TTAGCATTCACCCTTGTGAAAACATTTTTATGTGAAACATTCCTATTTTT  99
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  TTAGCATTCA-CCTTGTGAAAACATTTTTATGTG-AACATTCCTATTTTT  96

seq1  ATAAAAACTCCTGAGCTTTAAAAAAACACTGTAATTAAT-ATGTCTTAAA  148
      |||||||   |||||||| ||||||||||||||| |||| ||||  ||||
seq2  ATAAAAAACTCTGAGCTTAAAAAAAACACTGTAAATAATAATGTTCTAAA  146

seq1  AATATTTTTTCTATTTTCTTGTTTG-AAAAGTGAA--CAGTTTTAAATGA  195
      |||| |||||||| ||||||||| | |||||||||   ||||||||||||
seq2  AATA-TTTTTCTA-TTTCTTGTTCGAAAAAGTGAAACAAGTTTTAAATGA  194

seq1  ACTAAAGTGCTTCAAAATAAACC-TTTATGTGCAGTGGGA-CCCCATTCT  243
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  ACTAAAGTGCTTCAAAATAAACCTTTTATGTGCAGTGGGACCCCCATTCT  244

seq1  GACTGGAGAACAGGACGTTCTATGTGGATTTGACTGTGACAGGTGACAAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGAACAGGACGTTCTATGTGGATTTGACTGTGACAGGTGACAAT  294

seq1  CTAAACACATTGAAACCAGAGTTTGTGGAGTCCCCACCCGACACCCATCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACACATTGAAACCAGAGTTTGTGGAGTCCCCACCCGACACCCATCA  344

seq1  TTCCTCTTCATGGGGCAGGCAGGAACTGTCAGGATTCAGTCAGTGCTCCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTCATGGGGCAGGCAGGAACTGTCAGGATTCAGTCAGTGCTCCC  394

seq1  CTACCCCTGGGGTGGGGCTCAGGCCCCTGCTGAAGCATGGTGACCTTGCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCTGGGGTGGGGCTCAGGCCCCTGCTGAAGCATGGTGACCTTGCT  444

seq1  TGCAAAGCAGACACCACTAAAGAATCACTGCCATTTTATTGTAAGTATTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCAGACACCACTAAAGAATCACTGCCATTTTATTGTAAGTATTC  494

seq1  TGAAGTTGTAATTCCCTTCCCAGAACAAGTCCAACGCTCCCAGTGAGAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTGTAATTCCCTTCCCAGAACAAGTCCAACGCTCCCAGTGAGAAT  544

seq1  AACCTGGCCCTGCTGTGTGCTTCTGGAGACCAGGGAGAGTGGAATCTCGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGCCCTGCTGTGTGCTTCTGGAGACCAGGGAGAGTGGAATCTCGG  594

seq1  GCAGGACGACAGCGCCCTCCATGGCAGGCAACTCCCTCCATCCCCAAGGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACGACAGCGCCCTCCATGGCAGGCAACTCCCTCCATCCCCAAGGA  644

seq1  AACGCGTTTCCTCTGGTGGGCTGACAGAGTCTCTGTTTATCCTGAAAGAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCGTTTCCTCTGGTGGGCTGACAGAGTCTCTGTTTATCCTGAAAGAG  694

seq1  GAGAGCAGGGAGAAGCCCCTCTGTGCTGACAGCGTAAGTGGCCCTACTGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGGGAGAAGCCCCTCTGTGCTGACAGCGTAAGTGGCCCTACTGT  744

seq1  GGTGGGAAAGCCAGCTCCGACTTCAGGACTGCGTTCCCAGCCTGCTGCTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAAAGCCAGCTCCGACTTCAGGACTGCGTTCCCAGCCTGCTGCTC  794

seq1  CTGAAGCTTCCCAAACAGAGAGAGGAAGAGCAGAAGTGAAGCAAACACCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTTCCCAAACAGAGAGAGGAAGAGCAGAAGTGAAGCAAACACCA  844

seq1  GGTCAGGCTCCACTTCAGTCAGAGGATCTGTCGGTGCCCGGCCCCGGGAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGCTCCACTTCAGTCAGAGGATCTGTCGGTGCCCGGCCCCGGGAG  894

seq1  CCGCCAGTCGACTTTTGTTCCCTGGGAGAAGGCTGGCAAAGAGGACACGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCAGTCGACTTTTGTTCCCTGGGAGAAGGCTGGCAAAGAGGACACGA  944

seq1  AGCCTTCAAAGGATGTCGGACTTCTCCAAGAAGTAGTGTCATTGTGTCAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCAAAGGATGTCGGACTTCTCCAAGAAGTAGTGTCATTGTGTCAC  994

seq1  ATGTCATGTGACTTCCAACAAGATTTAAACATTTCAGAAGAAAGCAGAAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGTGACTTCCAACAAGATTTAAACATTTCAGAAGAAAGCAGAAG  1044

seq1  TGGAAACCAAACTTAGGTACCAGTAGTGGGTCAGTTGCTTGCCTCTTGGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCAAACTTAGGTACCAGTAGTGGGTCAGTTGCTTGCCTCTTGGC  1094

seq1  TTCTCCGGAGGCATGTGGAATTC  1116
      |||||||||||||||||||||||
seq2  TTCTCCGGAGGCATGTGGAATTC  1117