BAC Information

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BAC

Clone NameB6Ng01-224G05
Chromosome1 (Build37)
Map Location 165,407,911 - 165,537,535
singlet/doubletdoublet
Overlap genenone
Upstream geneDnm3, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1
Downstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224G05.bB6Ng01-224G05.g
ACCGA038862GA038863
length1,170940
definitionB6Ng01-224G05.b B6Ng01-224G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,407,911 - 165,409,164)(165,536,604 - 165,537,535)
sequence
gaattcactgaaagaacattttaaaaaatacaacatttccatctgttatt
ttaataatccatgcttggggactctctttatgaaccgttttcttttcttt
gctcccatttagatgaataaatatttgactcgaaagccctgaggggtagt
cagccaatcagttcactgaattgcgaacattcttaaccctataactttgt
ctgtagcaggcacctcctgctgtggaactaactgcaaagggatcagagca
atataatccttagactgttccatctcaaggttactctgaagtggagagag
gaagtagttttaattttgataaaataaactggattttgtggctttattat
ttgttttagtttctcctctcaacacctcagaaaagatgtgtctgctaatt
tgaaatcattctccttggtgtaatcatcattaaaccgttttatgccctta
aggttattgtttttaaaggtggtgatacataatttgttcctgtcattcgg
aaatgaaaatcctgagttttattttacttttgtaaggtagaaccaagtca
tatagtgactgttatgaaagaaatattcacaggattctttcctaatggtg
agatagaaaatagacagactctgacatgtgacctaaatgcatttgaaatg
ccaagtcatttgcaaaattctgtatttttgtgttattctccttcccatca
ggcttccttaccacagccctatttcagtgattattaaagcaatcacattt
aagtttataccatgaatttcatgggaactcattttttatatataaattga
aacatgtttcctaggaacgaatagattttgtggatgtaatctaatatatc
ttgaatcaagcccaaaagaagtctttggctgcgtgtgaaggataaagtaa
aaattccactaataaaattttacgattgggtgggtaaaaacctttacaga
ataaaaattattttcctgtttcttctatattaaaagttataaggtattca
ctaaaactaagcctcgttattatactataataagaaagtatttctaggag
atacaatagggtagcatgttgcaaatttaaatgtatacagtttttgtcaa
gaaattacacctttagacggtctactagtagccacacctgaagcagctaa
atttataatggcatttgatc
gaattctggagcctctttctgacttttcctttggttgtatggttgatagg
ctggccatatccaggcagaaaacagaagccagcgtgtgtgtgggctggat
agttctttcatggggagctgtactgcaggaagcaaaggcaccagcattaa
aaaaaaaaaaatctcatctttgatccgtttcctattctgccttccttggc
ctgaagtgaacccccattgtcaaccaaattcaacaaatatataaaaccaa
ggctaatgaaagacacaagtatagatgaaataaggttatatacattattg
gtttttttcccttccgtttcttcctttctatttcctaaaacagaataatt
tcataatggttgtcttagttgactttctgttgcagtggtaaaataatcca
acaagagcaacttaaaggagaagggttttattcttgtttacagttgcagg
ggagccagggcgggggatggggaaggtatggtggcagcagcaggggctgg
ctcatagcaatgagttaagcattttgtgtcattctaatattaaatggaaa
gattctgagtgctttctcatatctgtgtggggaatgaatgaatgtaaatg
aaaaatatcatacataggatatgtgtgtccagtttttatatttcccagaa
ttggttcagtttttctctgtttctccttattcttgttcatatcataggat
tggatttcatcttgaagaaaatgttttcagcttctctttctccctccctc
tctccctccctctgttcatccctccttccttccctccctcccatctcata
tttctcttctgtggctacagttctccaccaaagaccaggatacctgggac
tcatacccagaagtcttatcttagagcacatgagtagtcaggttccatac
ccctcgttctgttggaagcctaaggagagaaagacctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_165407911_165409164
seq2: B6Ng01-224G05.b_43_1212

seq1  GAATTCACTGAAAGAACATTTTAAAAAATACAACATTTCCATCTGTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAAGAACATTTTAAAAAATACAACATTTCCATCTGTTATT  50

seq1  TTAATAATCCATGCTTGGGGACTCTCTTTATGAACCGTTTTCTTTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATCCATGCTTGGGGACTCTCTTTATGAACCGTTTTCTTTTCTTT  100

seq1  GCTCCCATTTAGATGAATAAATATTTGACTCGAAAGCCCTGAGGGGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCATTTAGATGAATAAATATTTGACTCGAAAGCCCTGAGGGGTAGT  150

seq1  CAGCCAATCAGTTCACTGAATTGCGAACATTCTTAACCCTATAACTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAATCAGTTCACTGAATTGCGAACATTCTTAACCCTATAACTTTGT  200

seq1  CTGTAGCAGGCACCTCCTGCTGTGGAACTAACTGCAAAGGGATCAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCAGGCACCTCCTGCTGTGGAACTAACTGCAAAGGGATCAGAGCA  250

seq1  ATATAATCCTTAGACTGTTCCATCTCAAGGTTACTCTGAAGTGGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCCTTAGACTGTTCCATCTCAAGGTTACTCTGAAGTGGAGAGAG  300

seq1  GAAGTAGTTTTAATTTTGATAAAATAAACTGGATTTTGTGGCTTTATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGTTTTAATTTTGATAAAATAAACTGGATTTTGTGGCTTTATTAT  350

seq1  TTGTTTTAGTTTCTCCTCTCAACACCTCAGAAAAGATGTGTCTGCTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAGTTTCTCCTCTCAACACCTCAGAAAAGATGTGTCTGCTAATT  400

seq1  TGAAATCATTCTCCTTGGTGTAATCATCATTAAACCGTTTTATGCCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCATTCTCCTTGGTGTAATCATCATTAAACCGTTTTATGCCCTTA  450

seq1  AGGTTATTGTTTTTAAAGGTGGTGATACATAATTTGTTCCTGTCATTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTGTTTTTAAAGGTGGTGATACATAATTTGTTCCTGTCATTCGG  500

seq1  AAATGAAAATCCTGAGTTTTATTTTACTTTTGTAAGGTAGAACCAAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAATCCTGAGTTTTATTTTACTTTTGTAAGGTAGAACCAAGTCA  550

seq1  TATAGTGACTGTTATGAAAGAAATATTCACAGGATTCTTTCCTAATGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGACTGTTATGAAAGAAATATTCACAGGATTCTTTCCTAATGGTG  600

seq1  AGATAGAAAATAGACAGACTCTGACATGTGACCTAAATGCATTTGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAAAATAGACAGACTCTGACATGTGACCTAAATGCATTTGAAATG  650

seq1  CCAAGTCATTTGCAAAATTCTGTATTTTTGTGTTATTCTCCTTCCCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCATTTGCAAAATTCTGTATTTTTGTGTTATTCTCCTTCCCATCA  700

seq1  GGCTTCCTTACCACAGCCCTATTTCAGTGATTATTAAAGCAATCACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTTACCACAGCCCTATTTCAGTGATTATTAAAGCAATCACATTT  750

seq1  AAGTTTATACCATGAATTTCATGGGAACTCATTTTTTATATATAAATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATACCATGAATTTCATGGGAACTCATTTTTTATATATAAATTGA  800

seq1  AACATGTTTCCTAGGAACGAATAGATTTTGTGGATGTAATCTAATATATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTTCCTAGGAACGAATAGATTTTGTGGATGTAATCTAATATATC  850

seq1  TTGAATCAAGCCCAAAAGAAGTCTTTGGCTGCGTGTGAAGGATAAAGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCAAGCCCAAAAGAAGTCTTTGGCTGCGTGTGAAGGATAAAGTAA  900

seq1  AAATTCCACTAATAAAATTTTACGATTGGGTGGGTAAAAACCTTTACAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATTCCACTAATAAAATTTTACGATTGGGTGGGTAAAAACCTTTAC-AG  949

seq1  AATAAAAA-TATTTTCCTGTTTCTTCTTATATTAAAAGTTAT-AGGTATT  998
      |||||||| ||||||||||||||||| ||||||||||||||| |||||||
seq2  AATAAAAATTATTTTCCTGTTTCTTC-TATATTAAAAGTTATAAGGTATT  998

seq1  CACTAAAACTAAGCCTCGTTATTATACTATAAATAAGAAAGTATTTCTA-  1047
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  CACTAAAACTAAGCCTCGTTATTATACTAT-AATAAGAAAGTATTTCTAG  1047

seq1  GAGATACAATAGGGTAGCATGTTTGCAAAATTTTAAAATGTATACAGTTT  1097
      ||||||||||||||||||||| |||||||   || |||||||||||||||
seq2  GAGATACAATAGGGTAGCATG-TTGCAAA---TTTAAATGTATACAGTTT  1093

seq1  TTGTCCAAGAAATTACACTTTTAGAC-GTCTACTTAGTAAGCACACCTGA  1146
      |||| ||||||||||||| ||||||| |||||| |||||  |||||||||
seq2  TTGT-CAAGAAATTACACCTTTAGACGGTCTAC-TAGTAGCCACACCTGA  1141

seq1  AAAGCCAGCTAAATTTATAAAATGCATTTTGATCCCAGTTTAGAACTAAA  1196
      |    |||||||||||||  ||||   |||||||                
seq2  A---GCAGCTAAATTTAT--AATGGCATTTGATC----------------  1170

seq1  AGGCAAGCCATATAGAGAGAGTTCAAAATTCTCAATAAGACCAGCCTGGC  1246
                                                        
seq2  --------------------------------------------------  1170

seq1  ATTTGATC  1254
              
seq2  --------  1170

seq1: chr1_165536604_165537535
seq2: B6Ng01-224G05.g_68_1007 (reverse)

seq1  ATGAGGTC-TTCTACTCTTAGGCTT-CAACAGAACGA-GGGTATGG-ACC  46
      |||||||| ||||   ||||||||| ||||||||||| |||||||| |||
seq2  ATGAGGTCTTTCTCTCCTTAGGCTTCCAACAGAACGAGGGGTATGGAACC  50

seq1  TGACTACTCATGTGCTCTAAGATAAGACTTCTGGGTATGAGT-CCAGGTA  95
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGACTACTCATGTGCTCTAAGATAAGACTTCTGGGTATGAGTCCCAGGTA  100

seq1  TCCTGGTCTTTGGTGGAGAACTGTAGCCACAG-AGAG-AATATGAGATGG  143
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  TCCTGGTCTTTGGTGGAGAACTGTAGCCACAGAAGAGAAATATGAGATGG  150

seq1  GAGGGAGGGAAGGAAGGAGGGATGAACAGAGGGAGGGAGAGAGGGAGGGA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGGAAGGAAGGAGGGATGAACAGAGGGAGGGAGAGAGGGAGGGA  200

seq1  GAAAGAGAAGCTGAAAACATTTTCTTCAAGATGAAATCCAATCCTATGAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAAGCTGAAAACATTTTCTTCAAGATGAAATCCAATCCTATGAT  250

seq1  ATGAACAAGAATAAGGAG-AACAGAGAAAAACTGAACCAATTCTGGGAAA  292
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGAACAAGAATAAGGAGAAACAGAGAAAAACTGAACCAATTCTGGGAAA  300

seq1  TATAAAAACTGGACACACATATCCTATGTATGATATTTTTCATTTACATT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAACTGGACACACATATCCTATGTATGATATTTTTCATTTACATT  350

seq1  CATTCATTCCCCACACAGATATGAGAAAGCACTCAGAATCTTTCCATTTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCCCCACACAGATATGAGAAAGCACTCAGAATCTTTCCATTTA  400

seq1  ATATTAGAATGACACAAAATGCTTAACTCATTGCTATGAGCCAGCCCCTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAATGACACAAAATGCTTAACTCATTGCTATGAGCCAGCCCCTG  450

seq1  CTGCTGCCACCATACCTTCCCCATCCCCCGCCCTGGCTCCCCTGCAACTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCACCATACCTTCCCCATCCCCCGCCCTGGCTCCCCTGCAACTG  500

seq1  TAAACAAGAATAAAACCCTTCTCCTTTAAGTTGCTCTTGTTGGATTATTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGAATAAAACCCTTCTCCTTTAAGTTGCTCTTGTTGGATTATTT  550

seq1  TACCACTGCAACAGAAAGTCAACTAAGACAACCATTATGAAATTATTCTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGCAACAGAAAGTCAACTAAGACAACCATTATGAAATTATTCTG  600

seq1  TTTTAGGAAATAGAAAGGAAGAAACGGAAGGGAAAAAAACCAATAATGTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAAATAGAAAGGAAGAAACGGAAGGGAAAAAAACCAATAATGTA  650

seq1  TATAACCTTATTTCATCTATACTTGTGTCTTTCATTAGCCTTGGTTTTAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCTTATTTCATCTATACTTGTGTCTTTCATTAGCCTTGGTTTTAT  700

seq1  ATATTTGTTGAATTTGGTTGACAATGGGGGTTCACTTCAGGCCAAGGAAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTTGAATTTGGTTGACAATGGGGGTTCACTTCAGGCCAAGGAAG  750

seq1  GCAGAATAGGAAACGGATCAAAGATGAGATTTTTTTTTTTTTAATGCTGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATAGGAAACGGATCAAAGATGAGATTTTTTTTTTTTTAATGCTGG  800

seq1  TGCCTTTGCTTCCTGCAGTACAGCTCCCCATGAAAGAACTATCCAGCCCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGCTTCCTGCAGTACAGCTCCCCATGAAAGAACTATCCAGCCCA  850

seq1  CACACACGCTGGCTTCTGTTTTCTGCCTGGATATGGCCAGCCTATCAACC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACGCTGGCTTCTGTTTTCTGCCTGGATATGGCCAGCCTATCAACC  900

seq1  ATACAACCAAAGGAAAAGTCAGAAAGAGGCTCCAGAATTC  932
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACCAAAGGAAAAGTCAGAAAGAGGCTCCAGAATTC  940