BAC Information

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BAC

Clone NameB6Ng01-224H15
Chromosome1 (Build37)
Map Location 142,068,554 - 142,069,701
singlet/doubletsinglet
Overlap geneCfh
Upstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367
Downstream geneKcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224H15.bB6Ng01-224H15.g
ACCGA038924GA038925
length1,1811,148
definitionB6Ng01-224H15.b B6Ng01-224H15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
tttaacatccttaatcatcagggaaatgcaaatcaaacaaccctgagatt
ctacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagca
gatgctggctaggatgtagagaaagaggaacactcctccattgttggtgg
aattgcaagcttgtacaaccactctggaaatcagtctggcggttcctcag
gaaattggacatagtactaccggaggatccagcaatacctctcctgggca
tatatccagaagatgccccaactggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctagaaagaacccagatg
tccctcaacagaggaatggatacagaaaatgtggtacatctacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctagccaaa
tggatggacctggagggtatcatcctgagtgaggtaacacactcccaaag
gaactcacacaatatgtactcactgataagtggatattagcccaaaacct
aggatacccaagatataagatacaatttcctaaacacatgaaactcaaga
aaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaac
aaaacacccatggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcatccaaacgctgacaccattgcatacactagcaagattttattgaaag
gacccagatgtagctgtctcttgtgagactatgccgggacctagcaaaca
cagaagtggaagctcacagtcagctaatggatggatcacaggctcccaat
ggaggagcttagagaaagtagacaggaggtaaagggatctgcaaccctat
agtggaacaacattatgaactaaccagtacccgggagctcttgactctag
ctgcattatgtatcaaagatgactagtcgtcatcactggaaaagagaggc
ccatgacttgccactttatattgccaagtatagggaccgccagtgccaaa
aagggggattggtggtgtggttagaggcgtc
gaattcttgaggtgttctaactagacaggaacaagttctgttcattcctg
tagtccatcagtcaacataaacgtacaccaaacacatttgcttgaaataa
ataggaagttgttaatgaaagcagagcaggtgcttcttatatagggagca
gagaagtgctttcaaaaggataactacattttcagacagatgattcagct
taaaacttttaaaacgggggaagctgactgcttctacgtccaggtgaatg
agtaaactcaattttcttctggtacttaaatatttactcagatttccaca
aataaaacctgatcctatgtgtttgcaataacgtaattaacagttagttt
ttgctttataaaaaccctactttgttaatattctactttcttggatataa
atgccaatttcaaatgtttttcagaaacagaatgactgtgtaggtttgat
tatctaaaaacaagagttttacttaaactcaagggagataactataattt
tgattgaactttcaagcaaacatctgctattttaataatcatgattacga
gggtttttttttctatacagattttaaagagttagtacagacacacaaac
caaatgcaattctttttcccaatgccaatatgtctcaaaattgtcttttg
aaatgttcttgctgcaattaaatcagccttgatgaattttcaaatatttt
tcaaaacatcagttgttactacattcgatagattaaagatggagatgtca
ttttttttcacttgcaatatcttttaaaaggatttcgagaaaagaataag
aagtattgttttaaattagtactgtatttcttagtagaaaatgaaaacta
caaattgcccagaaaaataaagtaaatgaataaagtggggagtagcatta
atgattgtttcaataaaatttctcttctgcccttctttatggataaaagt
gagtattaagttttatgcatataacatatgatccaaatagtattttgtaa
ttaaaatatttagattaatttataaatacaatacttaaatggaattttgg
accagaaaataatcagttgcattaaatactttaaaaaacaacctcaaatt
taaagttttgaattatatttaatgaacatggaattaacaagtttctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142068554_142069701
seq2: B6Ng01-224H15.g_67_1214

seq1  GAATTCTTGAGGTGTTCTAACTAGACAGGAACAAGTTCTGTTCATTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGGTGTTCTAACTAGACAGGAACAAGTTCTGTTCATTCCTG  50

seq1  TAGTCCATCAGTCAACATAAACGTACACCAAACACATTTGCTTGAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCATCAGTCAACATAAACGTACACCAAACACATTTGCTTGAAATAA  100

seq1  ATAGGAAGTTGTTAATGAAAGCAGAGCAGGTGCTTCTTATATAGGGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGTTGTTAATGAAAGCAGAGCAGGTGCTTCTTATATAGGGAGCA  150

seq1  GAGAAGTGCTTTCAAAAGGATAACTACATTTTCAGACAGATGATTCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGCTTTCAAAAGGATAACTACATTTTCAGACAGATGATTCAGCT  200

seq1  TAAAACTTTTAAAACGGGGGAAGCTGACTGCTTCTACGTCCAGGTGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTTTAAAACGGGGGAAGCTGACTGCTTCTACGTCCAGGTGAATG  250

seq1  AGTAAACTCAATTTTCTTCTGGTACTTAAATATTTACTCAGATTTCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACTCAATTTTCTTCTGGTACTTAAATATTTACTCAGATTTCCACA  300

seq1  AATAAAACCTGATCCTATGTGTTTGCAATAACGTAATTAACAGTTAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACCTGATCCTATGTGTTTGCAATAACGTAATTAACAGTTAGTTT  350

seq1  TTGCTTTATAAAAACCCTACTTTGTTAATATTCTACTTTCTTGGATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATAAAAACCCTACTTTGTTAATATTCTACTTTCTTGGATATAA  400

seq1  ATGCCAATTTCAAATGTTTTTCAGAAACAGAATGACTGTGTAGGTTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAATTTCAAATGTTTTTCAGAAACAGAATGACTGTGTAGGTTTGAT  450

seq1  TATCTAAAAACAAGAGTTTTACTTAAACTCAAGGGAGATAACTATAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAAAACAAGAGTTTTACTTAAACTCAAGGGAGATAACTATAATTT  500

seq1  TGATTGAACTTTCAAGCAAACATCTGCTATTTTAATAATCATGATTACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAACTTTCAAGCAAACATCTGCTATTTTAATAATCATGATTACGA  550

seq1  GGGTTTTTTTTTCTATACAGATTTTAAAGAGTTAGTACAGACACACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTTTTTCTATACAGATTTTAAAGAGTTAGTACAGACACACAAAC  600

seq1  CAAATGCAATTCTTTTTCCCAATGCCAATATGTCTCAAAATTGTCTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCAATTCTTTTTCCCAATGCCAATATGTCTCAAAATTGTCTTTTG  650

seq1  AAATGTTCTTGCTGCAATTAAATCAGCCTTGATGAATTTTCAAATATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCTTGCTGCAATTAAATCAGCCTTGATGAATTTTCAAATATTTT  700

seq1  TCAAAACATCAGTTGTTACTACATTCGATAGATTAAAGATGGAGATGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACATCAGTTGTTACTACATTCGATAGATTAAAGATGGAGATGTCA  750

seq1  TTTTTTTTCACTTGCAATATCTTTTAAAAGGATTTCGAGAAAAGAATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCACTTGCAATATCTTTTAAAAGGATTTCGAGAAAAGAATAAG  800

seq1  AAGTATTGTTTTAAATTAGTACTGTATTTCTTAGTAGAAAATGAAAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTGTTTTAAATTAGTACTGTATTTCTTAGTAGAAAATGAAAACTA  850

seq1  CAAATTGCCCAGAAAAATAAAGTAAATGAATAAAGT-GGGAGTAGCATTA  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAAATTGCCCAGAAAAATAAAGTAAATGAATAAAGTGGGGAGTAGCATTA  900

seq1  ATGATTGTTTC-ATTAAATTTCTCTTCTG-CCTTC-TTATTGATAAAAGT  946
      ||||||||||| || |||||||||||||| ||||| |||| |||||||||
seq2  ATGATTGTTTCAATAAAATTTCTCTTCTGCCCTTCTTTATGGATAAAAGT  950

seq1  GAGTATTAAG-TTTATGCATAT-ACATATGATCCAAATAGTATTTTGTTA  994
      |||||||||| ||||||||||| |||||||||||||||||||||||| ||
seq2  GAGTATTAAGTTTTATGCATATAACATATGATCCAAATAGTATTTTG-TA  999

seq1  ATTAAAATATTTAGATTAATTTATAAATACAATACTTAAATTGAAATTTT  1044
      ||||||||||||||||||||||||||||||||||||||||| |||  |||
seq2  ATTAAAATATTTAGATTAATTTATAAATACAATACTTAAATGGAA--TTT  1047

seq1  TGAACAAGGAAAATATCAGTTGCAATAAAATACTTTAAAAAAACAAACTT  1094
      || || || |||  ||||||||| || ||||||||| ||||||||| || 
seq2  TGGACCAGAAAATAATCAGTTGC-ATTAAATACTTT-AAAAAACAACCT-  1094

seq1  CAAAAATTTAAGTTTTG-ATTATATTTAATGAACATTGAATAAACAAATT  1143
        ||| || |||||||| |||||||||||||||||| |||| ||||| ||
seq2  -CAAATTTAAAGTTTTGAATTATATTTAATGAACATGGAATTAACAAGTT  1143

seq1  TCTGC  1148
      |||||
seq2  TCTGC  1148