BAC Information

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BAC

Clone NameB6Ng01-224K09
Chromosome1 (Build37)12 (Build37)
Map Location 31,403,876 - 31,405,04031,470,566 - 31,470,663
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Downstream geneLOC624275, LOC666056, LOC100041238, Khdrbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224K09.bB6Ng01-224K09.g
ACCGA039046GA039047
length1,185924
definitionB6Ng01-224K09.b B6Ng01-224K09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,403,876 - 31,405,040)(31,470,566 - 31,470,663)
sequence
gaattctttttcctgtctgtttctcttctcttctcctcctttcgcctttc
ctttctcctcgtcctccactctccttcccctgcttcttctatttactttc
ttcaagatgctgtgtagcagttaaacctgggttaattatgctggactctt
gtgatactattgtttctgattccctagttctgggatatagatgtgtacca
ccacagctagctatataaggcttctcatcaaaacactgagattaaaccaa
accaaaccaaaccaacccaacccaaaacctatgttctccattttccagcc
taattctaacaattcaactagaaaatatgtcaagctcccagggcacaggc
gcagggcatagagaattgactcgacaatgtggtctttttttctgattcta
atacacatataggcagaattaaaactcaccctagctttcctttatcccag
attagaattgctctttgccagcctgcactcagagtcagcaaatatgttgc
agtgagaaactgagtaatttctatggagatgtattttatttctccctgga
agttagtttatttaaactttttacttcatatcaactattctttgaagtct
tcttaaaaataatacaatattttaaagtttggttttttttctagtctagt
tttttcaagatcagcaactacagactcaatatagtttaaaacagtaattt
taagtaaatcagacaaatctgggcctttgttattaataaaaataatagat
tctaatagacttcaggattgtttatgactcaaatggttttaagattccta
taacaaggtttattgtttttttctgatattttaatcaacctttcttatta
aaatatttgaggactgaaaagtatctggtatttctggggaactggactat
ctggtagtgttggcttgagatacccatgtcttttagatttagtagccttc
catctttacaaaggtctctgctctttgcttttggacagacctaaatttgc
tcagcctggtccctctagaatatacttgccaataccaattaagaataagc
aggaacagtaaagaaataggaggtagaaatttttgtgggtgacctaactg
gccagtggatgttaacagaaggctccaaggcctctttgaggccctccttt
gaactatttataaaaggaacgatatgttctgtagt

gaattccactctttgttgttgttgttgttgttgttgttgttgcccacttc
taagaaggaccaaattatccatactttggtcttccttcttcttgagcttc
atttggtctgtgaattgtatcttgggtattccaagcttcttggctaataa
ccatttatcactgagtgtataccatgtgtgttcttttgtttcctcactca
gaaacttaaagaaacagatttagtgtaatccctaccaaaattacaaggat
cttgcccacataactatgaaaaaaatctaatatttataaggaaacccatc
acctggtatagttaagatgaaccaataaaattttcatatatataaaaatt
gttattacctggaaaactaatagaataatgtacagatgatacatatgaat
tgttttttgttttattttgttttttattagatattttctttatttatact
tcaaatgtgtttccctttctgggtctcaacttcagaaactccctatccca
tcccttctccccctgcctctatggggtgctcccccacccacccattcctg
tcctcctgtcctggtactcccctatattggggcattgaacaccctcaagc
ccaagagcctctcctcccactgatgatcaacaagtccatcctctgccata
tatgtggccagcaccatgtatattctttggttggtggtccagtgcccagg
agctctgggggggggggaggtctggactgttgatactgttgcttcctcca
tggagctgcaaccctctcagctccttcagtccctttctccaacttccttc
atttgggacccacgagcttcaatccaacggtagatttgttttatctctct
agtgatacatttcatcaaatctgaatataattaacacacagttatacttt
gtataaagttaccatttcattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31403876_31405040
seq2: B6Ng01-224K09.b_47_1231

seq1  GAATTCTTTTTCCTGTCTGTTTCTCTTCTCTTCTCCTCCTTTCGCCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCCTGTCTGTTTCTCTTCTCTTCTCCTCCTTTCGCCTTTC  50

seq1  CTTTCTCCTCGTCCTCCACTCTCCTTCCCCTGCTTCTTCTATTTACTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCTCGTCCTCCACTCTCCTTCCCCTGCTTCTTCTATTTACTTTC  100

seq1  TTCAAGATGCTGTGTAGCAGTTAAACCTGGGTTAATTATGCTGGACTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATGCTGTGTAGCAGTTAAACCTGGGTTAATTATGCTGGACTCTT  150

seq1  GTGATACTATTGTTTCTGATTCCCTAGTTCTGGGATATAGATGTGTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACTATTGTTTCTGATTCCCTAGTTCTGGGATATAGATGTGTACCA  200

seq1  CCACAGCTAGCTATATAAGGCTTCTCATCAAAACACTGAGATTAAACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTAGCTATATAAGGCTTCTCATCAAAACACTGAGATTAAACCAA  250

seq1  ACCAAACCAAACCAACCCAACCCAAAACCTATGTTCTCCATTTTCCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACCAAACCAACCCAACCCAAAACCTATGTTCTCCATTTTCCAGCC  300

seq1  TAATTCTAACAATTCAACTAGAAAATATGTCAAGCTCCCAGGGCACAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTAACAATTCAACTAGAAAATATGTCAAGCTCCCAGGGCACAGGC  350

seq1  GCAGGGCATAGAGAATTGACTCGACAATGTGGTCTTTTTTTCTGATTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCATAGAGAATTGACTCGACAATGTGGTCTTTTTTTCTGATTCTA  400

seq1  ATACACATATAGGCAGAATTAAAACTCACCCTAGCTTTCCTTTATCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATATAGGCAGAATTAAAACTCACCCTAGCTTTCCTTTATCCCAG  450

seq1  ATTAGAATTGCTCTTTGCCAGCCTGCACTCAGAGTCAGCAAATATGTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATTGCTCTTTGCCAGCCTGCACTCAGAGTCAGCAAATATGTTGC  500

seq1  AGTGAGAAACTGAGTAATTTCTATGGAGATGTATTTTATTTCTCCCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAAACTGAGTAATTTCTATGGAGATGTATTTTATTTCTCCCTGGA  550

seq1  AGTTAGTTTATTTAAACTTTTTACTTCATATCAACTATTCTTTGAAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTTTATTTAAACTTTTTACTTCATATCAACTATTCTTTGAAGTCT  600

seq1  TCTTAAAAATAATACAATATTTTAAAGTTTGGTTTTTTTTCTAGTCTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAATAATACAATATTTTAAAGTTTGGTTTTTTTTCTAGTCTAGT  650

seq1  TTTTTCAAGATCAGCAACTACAGACTCAATATAGTTTAAAACAGTAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAGATCAGCAACTACAGACTCAATATAGTTTAAAACAGTAATTT  700

seq1  TAAGTAAATCAGACAAATCTGGGCCTTTGTTATTAATAAAAATAATAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAATCAGACAAATCTGGGCCTTTGTTATTAATAAAAATAATAGAT  750

seq1  TCTAATAGACTTCAGGATTGTTTATGACTCAAATGGTTTTAAGATTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAGACTTCAGGATTGTTTATGACTCAAATGGTTTTAAGATTCCTA  800

seq1  TAACAAGGTTTATTGTTTTTTTCTGATATTTTAATCAACCTTTCTTATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGGTTTATTGTTTTTTTCTGATATTTTAATCAACCTTTCTTATTA  850

seq1  AAATATTTGAGGACTGAAAAGTATCTGGTATTTCTGGGGAACTGGACTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGAGGACTGAAAAGTATCTGGTATTTCTGGGGAACTGGACTAT  900

seq1  CTGGTAGTGTTGGCTTGAGATACCCATGTCTTTTAGATTTAGTAGCCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGTGTTGGCTTGAGATACCCATGTCTTTTAGATTTAGTAGCCTTC  950

seq1  CATCTTTACAAAGGTCTTCTGCTCTTTGCTTTTGGACAGACCTTAATTTG  1000
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  CATCTTTACAAAGGTC-TCTGCTCTTTGCTTTTGGACAGACCTAAATTTG  999

seq1  CTCAGCCTGGTCCCTCTAG---ATACCTGCC-ATA-CAATTA--GATAAG  1043
      |||||||||||||||||||   |||| |||| ||| ||||||   |||||
seq2  CTCAGCCTGGTCCCTCTAGAATATACTTGCCAATACCAATTAAGAATAAG  1049

seq1  CAAGAACAGTAAAGATAGAGTAG-----AATTTTTGT-GGTGAC--TACT  1085
      || |||||||||||| | || ||     ||||||||| ||||||   |||
seq2  CAGGAACAGTAAAGAAATAGGAGGTAGAAATTTTTGTGGGTGACCTAACT  1099

seq1  G--CAGTGGATGTT-ACAG-AGGCTTCCAGG-CTCTTTGAGGCCCCTCTT  1130
      |  ||||||||||| |||| ||||| | ||| |||||||||||||  |||
seq2  GGCCAGTGGATGTTAACAGAAGGCTCCAAGGCCTCTTTGAGGCCCTCCTT  1149

seq1  GAAACTA-TTATAAAAGGA--CATATGTTCTTGGTAGT  1165
        ||||| |||||||||||   |||||||||  |||||
seq2  TGAACTATTTATAAAAGGAACGATATGTTCT--GTAGT  1185


seq1: chr12_31470566_31470663
seq2: B6Ng01-224K09.g_78_524 (reverse)

seq1  ACATTTGAAATGTAAATGAAGAAAATATCTAATAAAAA--CATTTAAAAA  48
      ||||||||| | ||||| ||||||||||||||||||||   |  ||||| 
seq2  ACATTTGAAGTATAAATAAAGAAAATATCTAATAAAAAACAAAATAAAAC  50

seq1  AATAAA--------GTGCATCTTCT-TAAAAAAAACAA--------CCAA  81
      || |||         || ||| ||| || |  |  | |        ||| 
seq2  AAAAAACAATTCATATGTATCATCTGTACATTATTCTATTAGTTTTCCAG  100

seq1  ACAACAACAACAACAAA---------------------------------  98
        || |||||     |                                  
seq2  GTAATAACAATTTTTATATATATGAAAATTTTATTGGTTCATCTTAACTA  150

seq1  --------------------------------------------------  98
                                                        
seq2  TACCAGGTGATGGGTTTCCTTATAAATATTAGATTTTTTTCATAGTTATG  200

seq1  --------------------------------------------------  98
                                                        
seq2  TGGGCAAGATCCTTGTAATTTTGGTAGGGATTACACTAAATCTGTTTCTT  250

seq1  --------------------------------------------------  98
                                                        
seq2  TAAGTTTCTGAGTGAGGAAACAAAAGAACACACATGGTATACACTCAGTG  300

seq1  --------------------------------------------------  98
                                                        
seq2  ATAAATGGTTATTAGCCAAGAAGCTTGGAATACCCAAGATACAATTCACA  350

seq1  --------------------------------------------------  98
                                                        
seq2  GACCAAATGAAGCTCAAGAAGAAGGAAGACCAAAGTATGGATAATTTGGT  400

seq1  -----------------------------------------------  98
                                                     
seq2  CCTTCTTAGAAGTGGGCAACAACAACAACAACAACAACAACAACAAA  447


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