BAC Information

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BAC

Clone NameB6Ng01-224K15
Chromosome1 (Build37)
Map Location 59,695,707 - 59,836,503
singlet/doubletdoublet
Overlap geneSumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2
Upstream geneAls2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973
Downstream geneAls2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224K15.bB6Ng01-224K15.g
ACCGA039058GA039059
length1,1611,093
definitionB6Ng01-224K15.b B6Ng01-224K15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,695,707 - 59,696,861)(59,835,425 - 59,836,503)
sequence
gaattcaaggaattcaaggccatcttcagttagttccaaaccagccttgg
ctaaatgagattgtctcaaaaaactggagaaagacaggcatggtggtgtg
tggcttaatcccagtaataaaaccagtaatgatatcctatgttcacctat
ccaggaatagcacaatctaaagatataacagtgagtattgttttgttttg
ttttttaaggatttattattatatataagtacactgtagctgacttcaga
cgcaccagaagagggtgtcagatctcattatgggtggttgtgagccacca
tgtggttgctgagatttgaactcaggacctttggaagagcggtcagtgct
ctttacccgctgagccatctcaccaaccccaacagtgagtttttaaaaag
gcattgtgactataactaaattcttgattcagaaaacattctagaaactt
taatgcttcaaagccattaaagtcattactgtatagtactaaagaaatac
tcatgcaagaaaatcctatctggggcatttccacttttctccctacatgg
ctaaaataaaaggagcttcagtaatgtttttacaaatattgtttatttta
atgaagctggtacagacgatgtcccttgaaaacccatgtcccaggccaaa
aagtacaaacagaatcaaaagcagtgtctgttgcgtacacttctgtatga
gtaactttattaataactgctgatgaacattagaactttcctgggatctt
ctgacaatactgtcttgctcaagacactttctttctctccagtgaagcca
cctttggagttagctgttgctctcactgtatctgtcatcttgactacaaa
catgatgttcttcttttggtccagacccgcagattttaaaagtagcttca
agctgaggaaaggtcattttccacagttcagttctctgaaaaattttcat
ctcccactgaaaatcacagtccaggagtgaagcaaccacatgctggaact
tcagagccaattgaagtcataggaaagcttcccattggttgatctttttt
tatcatcacaacctgaaaatgccacaagtcctgaaaagggtggcctcctc
tgttgccaccacatggaattctcctttaatgaaatgccagtattaaggga
gctgagctctg
gaattcaatccctggaacaaccagcaaagggggaacatgatatttaataa
aggtcaccaaagctcttatattaaaagacatgtaataagaacaggtatta
atagaggaaaaaaggttagtgaaacattacacctgagaagatagtgggga
catttagattaaggtgacagcagtggaactaataaaagcagtcacaatcc
atacatatcatcaaggtaaccaagagagtttcctgtcagattgaatgaaa
taagaaaaaaaaagaaaaagagacaaaaaacatttcctatttgcagacta
cacactggaaaagttagaatttctaatttgctaaacaaggtaaatttata
agacaaactggaaagcaccctcagttcagttttagacaagatatccaggc
tggagctggagcccagtgtgggagagggcttgcctagcatacacagtcaa
ggaggccctggattcaacctccattaaaaaaaaaaagtgcaacttaggaa
agaaatacatttgaaactcatcctctagaagccaattaaagtcctaagac
tgtatgaaattaaaccaggcagtggtggcgcacacctttaatcccaggac
tcaggaggcagaggcaggcagatttctgagttctaggccagcctggtcta
cagagtgaattccaggacagccagggctacacagagaaaccctgtctcga
aaaacaaaaacaaaaccaccaccaccaccaccaacaacaacaacaaaaag
actgtatgaaatcacccagagtcagtacagacagaacaaagaaagaaaaa
agtgacacacacccaaaatcccaacatttcgggaggctgagaaatgagtt
ctaggcagcatgggctacatagtgaaacccttgtctttataattcagatt
ataccttataaaaatagtttaaggcttcatgcacccttaccccaacatat
cacagcaagttatcacctttcaagggatgcattgcaaagacttaattcaa
atttagatatttcaagaagccaatttcggagtagccactccttggtgcac
gtctgaacctccaatccttgaagccctgggtgtgggggcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59695707_59696861
seq2: B6Ng01-224K15.b_52_1212

seq1  GAATTCAAGGAATTCAAGGCCATCTTCAGTTAGTTCCAAACCAGCCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAATTCAAGGCCATCTTCAGTTAGTTCCAAACCAGCCTTGG  50

seq1  CTAAATGAGATTGTCTCAAAAAACTGGAGAAAGACAGGCATGGTGGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGAGATTGTCTCAAAAAACTGGAGAAAGACAGGCATGGTGGTGTG  100

seq1  TGGCTTAATCCCAGTAATAAAACCAGTAATGATATCCTATGTTCACCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAATCCCAGTAATAAAACCAGTAATGATATCCTATGTTCACCTAT  150

seq1  CCAGGAATAGCACAATCTAAAGATATAACAGTGAGTATTGTTTTGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATAGCACAATCTAAAGATATAACAGTGAGTATTGTTTTGTTTTG  200

seq1  TTTTTTAAGGATTTATTATTATATATAAGTACACTGTAGCTGACTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGGATTTATTATTATATATAAGTACACTGTAGCTGACTTCAGA  250

seq1  CGCACCAGAAGAGGGTGTCAGATCTCATTATGGGTGGTTGTGAGCCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCAGAAGAGGGTGTCAGATCTCATTATGGGTGGTTGTGAGCCACCA  300

seq1  TGTGGTTGCTGAGATTTGAACTCAGGACCTTTGGAAGAGCGGTCAGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGCTGAGATTTGAACTCAGGACCTTTGGAAGAGCGGTCAGTGCT  350

seq1  CTTTACCCGCTGAGCCATCTCACCAACCCCAACAGTGAGTTTTTAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCCGCTGAGCCATCTCACCAACCCCAACAGTGAGTTTTTAAAAAG  400

seq1  GCATTGTGACTATAACTAAATTCTTGATTCAGAAAACATTCTAGAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGACTATAACTAAATTCTTGATTCAGAAAACATTCTAGAAACTT  450

seq1  TAATGCTTCAAAGCCATTAAAGTCATTACTGTATAGTACTAAAGAAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTTCAAAGCCATTAAAGTCATTACTGTATAGTACTAAAGAAATAC  500

seq1  TCATGCAAGAAAATCCTATCTGGGGCATTTCCACTTTTCTCCCTACATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAAGAAAATCCTATCTGGGGCATTTCCACTTTTCTCCCTACATGG  550

seq1  CTAAAATAAAAGGAGCTTCAGTAATGTTTTTACAAATATTGTTTATTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAAAAGGAGCTTCAGTAATGTTTTTACAAATATTGTTTATTTTA  600

seq1  ATGAAGCTGGTACAGACGATGTCCCTTGAAAACCCATGTCCCAGGCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTGGTACAGACGATGTCCCTTGAAAACCCATGTCCCAGGCCAAA  650

seq1  AAGTACAAACAGAATCAAAAGCAGTGTCTGTTGCGTACACTTCTGTATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAAACAGAATCAAAAGCAGTGTCTGTTGCGTACACTTCTGTATGA  700

seq1  GTAACTTTATTAATAACTGCTGATGAACATTAGAACTTTCCTGGGATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTTATTAATAACTGCTGATGAACATTAGAACTTTCCTGGGATCTT  750

seq1  CTGACAATACTGTCTTGCTCAAGACACTTTCTTTCTCTCCAGTGAAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATACTGTCTTGCTCAAGACACTTTCTTTCTCTCCAGTGAAGCCA  800

seq1  CCTTTGGAGTTAGCTGTTGCTCTCACTGTATCTGTCATCTTGACTACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGAGTTAGCTGTTGCTCTCACTGTATCTGTCATCTTGACTACAAA  850

seq1  CATGATGTTCTTCTTTTGGTCCAGACCCGCAGATTTTAAAAGTAGCTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTTCTTCTTTTGGTCCAGACCCGCAGATTTTAAAAGTAGCTTCA  900

seq1  AGCTGAGGAAAGGTCATTTTCCACAGTTCAGTTCTCTGAAAAATTTCCAT  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCTGAGGAAAGGTCATTTTCCACAGTTCAGTTCTCTGAAAAATTTTCAT  950

seq1  CTCCCACTGAAAATCACAGTCCAGGAGTGAAGCAACCACATGCTGGAACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTGAAAATCACAGTCCAGGAGTGAAGCAACCACATGCTGGAACT  1000

seq1  TCAGAGCCAATTGAAAGGTCATAGGAAAGC-TCCCATTGGTCGATC--TT  1047
      |||||||||||||||  ||||||||||||| |||||||||| ||||  ||
seq2  TCAGAGCCAATTGAA--GTCATAGGAAAGCTTCCCATTGGTTGATCTTTT  1048

seq1  TTTATCATCACAAACCTGAAAATG-CAC-AGTCCTGAAAAGGGTGGCCT-  1094
      ||||||||||| |||||||||||| ||| |||||||||||||||||||| 
seq2  TTTATCATCAC-AACCTGAAAATGCCACAAGTCCTGAAAAGGGTGGCCTC  1097

seq1  CTCTG-TGC--ACACAT-GAAATCT-CTTAAAGGAAAAAGGGCAGTATTA  1139
      ||||| |||   ||||| ||| ||| ||| || |  ||| | ||||||||
seq2  CTCTGTTGCCACCACATGGAATTCTCCTTTAATG--AAATGCCAGTATTA  1145

seq1  AGGGAGCTGAGGTCTG  1155
      ||||||||||| ||||
seq2  AGGGAGCTGAGCTCTG  1161

seq1: chr1_59835425_59836503
seq2: B6Ng01-224K15.g_72_1164 (reverse)

seq1  TTCTGCCCCCAC-CCCAGGGCT--CAGGATT-GAGGTCAGGACCTTGCAC  46
      |||||||||||| |||||||||   |||||| |||||   || | |||||
seq2  TTCTGCCCCCACACCCAGGGCTTCAAGGATTGGAGGTTCAGA-CGTGCAC  49

seq1  --AAGAGT-GCTACTCC-AAATT-GCTTCTTG-AATATCT-AATTTGATT  89
        | |||| |||||||| ||||| |||||||| ||||||| ||||||| |
seq2  CAAGGAGTGGCTACTCCGAAATTGGCTTCTTGAAATATCTAAATTTGAAT  99

seq1  TAAGTCTTTTCCATGCATCCCTTTGAAAGTGAT-ACTTGCTGTGATATGT  138
      ||||||||| | |||||||||||  || ||||| ||||||||||||||||
seq2  TAAGTCTTTGCAATGCATCCCTTGAAAGGTGATAACTTGCTGTGATATGT  149

seq1  TGGTGTATGTGTGCATGTAGCCTTAAACCTATTTTTTATAA-GTATAATC  187
      ||| ||| | ||||||| ||||||||| ||| ||||||||| ||||||||
seq2  TGGGGTAAGGGTGCATGAAGCCTTAAA-CTA-TTTTTATAAGGTATAATC  197

seq1  TGAATTATAAAGACAA-GGTTTCACTATGTAGCCCATGCTGCCTAG-ACT  235
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  TGAATTATAAAGACAAGGGTTTCACTATGTAGCCCATGCTGCCTAGAACT  247

seq1  CATTTCTCAGCCTCCCG-AATGTTGGGATTTT-GGTGTGTGTCACTTTTT  283
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  CATTTCTCAGCCTCCCGAAATGTTGGGATTTTGGGTGTGTGTCACTTTTT  297

seq1  TCTTTCTTTGTTCTGTCTGTACTGACTCTGGGTGATTTCATACAGTCTTT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTGTTCTGTCTGTACTGACTCTGGGTGATTTCATACAGTCTTT  347

seq1  TTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTTTTTGTTTTGTTTTTCGA  383
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTTTTGTTTTTGTTTTTCGA  397

seq1  GACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTCACTCTGTAGA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTCACTCTGTAGA  447

seq1  CCAGGCTGGCCTAGAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTCC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTAGAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTCC  497

seq1  TGGGATTAAAGGTGTGCGCCACCACTGCCTGGTTTAATTTCATACAGTCT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGTGTGCGCCACCACTGCCTGGTTTAATTTCATACAGTCT  547

seq1  TAGGACTTTAATTGGCTTCTAGAGGATGAGTTTCAAATGTATTTCTTTCC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTTTAATTGGCTTCTAGAGGATGAGTTTCAAATGTATTTCTTTCC  597

seq1  TAAGTTGCACTTTTTTTTTTTAATGGAGGTTGAATCCAGGGCCTCCTTGA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGCACTTTTTTTTTTTAATGGAGGTTGAATCCAGGGCCTCCTTGA  647

seq1  CTGTGTATGCTAGGCAAGCCCTCTCCCACACTGGGCTCCAGCTCCAGCCT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATGCTAGGCAAGCCCTCTCCCACACTGGGCTCCAGCTCCAGCCT  697

seq1  GGATATCTTGTCTAAAACTGAACTGAGGGTGCTTTCCAGTTTGTCTTATA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCTTGTCTAAAACTGAACTGAGGGTGCTTTCCAGTTTGTCTTATA  747

seq1  AATTTACCTTGTTTAGCAAATTAGAAATTCTAACTTTTCCAGTGTGTAGT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCTTGTTTAGCAAATTAGAAATTCTAACTTTTCCAGTGTGTAGT  797

seq1  CTGCAAATAGGAAATGTTTTTTGTCTCTTTTTCTTTTTTTTTCTTATTTC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATAGGAAATGTTTTTTGTCTCTTTTTCTTTTTTTTTCTTATTTC  847

seq1  ATTCAATCTGACAGGAAACTCTCTTGGTTACCTTGATGATATGTATGGAT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATCTGACAGGAAACTCTCTTGGTTACCTTGATGATATGTATGGAT  897

seq1  TGTGACTGCTTTTATTAGTTCCACTGCTGTCACCTTAATCTAAATGTCCC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGCTTTTATTAGTTCCACTGCTGTCACCTTAATCTAAATGTCCC  947

seq1  CACTATCTTCTCAGGTGTAATGTTTCACTAACCTTTTTTCCTCTATTAAT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCTTCTCAGGTGTAATGTTTCACTAACCTTTTTTCCTCTATTAAT  997

seq1  ACCTGTTCTTATTACATGTCTTTTAATATAAGAGCTTTGGTGACCTTTAT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTCTTATTACATGTCTTTTAATATAAGAGCTTTGGTGACCTTTAT  1047

seq1  TAAATATCATGTTCCCCCTTTGCTGGTTGTTCCAGGGATTGAATTC  1079
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCATGTTCCCCCTTTGCTGGTTGTTCCAGGGATTGAATTC  1093