BAC Information

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BAC

Clone NameB6Ng01-224L18
Chromosome1 (Build37)
Map Location 50,581,783 - 50,729,453
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224L18.bB6Ng01-224L18.g
ACCGA039109GA039110
length3201,075
definitionB6Ng01-224L18.b B6Ng01-224L18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,729,134 - 50,729,453)(50,581,783 - 50,582,839)
sequence
actctccctttctcttctagaacttttactactcatatcatgttataatt
gatactttcttttccatttctcagtctcatattcatttaactctttacta
gctcttctttaaattcattaatttctattgcttaatttcaagttcttggg
tctaatttttggcttccagaatctgttatctgttgttgggaccatgagta
aaggcgacatccatctctctctctctctctctctctctctctctctctct
ctctctctctgtgtgtgtgtgtgtgtgtctcactctttctccctccctct
ttccctctatttctttctct

gaattctttcctctaggaactgggatatttttgtgcccaactgttacact
ctacaagggcaaactctgtattaagataaaaaggtggtatgctggtggat
tctgtcaatctgacacaaacttgtctgaggcatcttgacaaagagactct
caattcaggaaaagtttccatcagattagcctgtcaacaagtgtatgggg
gcattttcttgattgatgattgatgtaagagggcctcccctccttgctac
cagttgattgtgctacctctgagtaggttgtccagtggtttataggaaag
caagctcaatgcccagtgcctccctccaggtatctttgatagctttgctc
atgtgacctgggaaatgtgtgtgccaaaaataaacacaaaaacaaaaaca
acatgttctccatagtgttttgccatagtaaaagtcaaagtaaaacacat
gggttatctggttcatttattttctgctgcacttttttttctttttttta
atgtgaagaaaagtggtttattaggcatatttatatagtcagtccttctg
taattttcaagtattcacttcttttcattttaactgaagatagttaaatg
gttatttgactaagaatgactttcaatttctatgttcacctctacttgaa
taattaaatgaagactaaagaaaggattaccaagttcccatttcattaat
tgaaggtgggggtttcatgataaacaaagaccaagtaaaaggagtaaaaa
ttactgttgggtgtccctatgctttataagaaattcattatgaattagaa
ttaaaatgtagtttaaatagtgagcactgacattctgagctatttcattc
atttcaaatccaattcttaaaccctgtaactgcatttccaaaggcactac
aagtcctgacaataacctttctccagaaaaatattttcaagtcagcattt
atcattccaatgtaccagggaattagcagaaaatcccactttgaaatggt
cctccacagaagcttgaaaagatgaaatcaaaggaagaatacaaaatgca
aaattgttgttaagattgaggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50729134_50729453
seq2: B6Ng01-224L18.b_55_374 (reverse)

seq1  AGAGAAAGAAATAGAGGGAGGGAGGGAGGGAGAAAGAGAGAGGAGATAGA  50
      |||||||||||||||||||  ||||||||||||||||| || || | | |
seq2  AGAGAAAGAAATAGAGGGAAAGAGGGAGGGAGAAAGAGTGA-GACACACA  49

seq1  GA-AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  99
       | | | | | |||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  99

seq1  GAGAGAGATGGATGTCGCCTTTACTCATGGTCCCAACAACAGATAACAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGATGGATGTCGCCTTTACTCATGGTCCCAACAACAGATAACAGA  149

seq1  TTCTGGAAGCCAAAAATTAGACCCAAGAACTTGAAATTAAGCAATAGAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAGCCAAAAATTAGACCCAAGAACTTGAAATTAAGCAATAGAAA  199

seq1  TTAATGAATTTAAAGAAGAGCTAGTAAAGAGTTAAATGAATATGAGACTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAATTTAAAGAAGAGCTAGTAAAGAGTTAAATGAATATGAGACTG  249

seq1  AGAAATGGAAAAGAAAGTATCAATTATAACATGATATGAGTAGTAAAAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGAAAAGAAAGTATCAATTATAACATGATATGAGTAGTAAAAGT  299

seq1  TCTAGAAGAGAAAGGGAGAGT  320
      |||||||||||||||||||||
seq2  TCTAGAAGAGAAAGGGAGAGT  320


seq1: chr1_50581783_50582839
seq2: B6Ng01-224L18.g_69_1143

seq1  GAATTCTTTCCTCTAGGAACTGGGATATTTTTGTGCCCAACTGTTACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTCTAGGAACTGGGATATTTTTGTGCCCAACTGTTACACT  50

seq1  CTACAAGGGCAAACTCTGTATTAAGATAAAAAGGTGGTATGCTGGTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGGGCAAACTCTGTATTAAGATAAAAAGGTGGTATGCTGGTGGAT  100

seq1  TCTGTCAATCTGACACAAACTTGTCTGAGGCATCTTGACAAAGAGACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAATCTGACACAAACTTGTCTGAGGCATCTTGACAAAGAGACTCT  150

seq1  CAATTCAGGAAAAGTTTCCATCAGATTAGCCTGTCAACAAGTGTATGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAGGAAAAGTTTCCATCAGATTAGCCTGTCAACAAGTGTATGGGG  200

seq1  GCATTTTCTTGATTGATGATTGATGTAAGAGGGCCTCCCCTCCTTGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCTTGATTGATGATTGATGTAAGAGGGCCTCCCCTCCTTGCTAC  250

seq1  CAGTTGATTGTGCTACCTCTGAGTAGGTTGTCCAGTGGTTTATAGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGATTGTGCTACCTCTGAGTAGGTTGTCCAGTGGTTTATAGGAAAG  300

seq1  CAAGCTCAATGCCCAGTGCCTCCCTCCAGGTATCTTTGATAGCTTTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCAATGCCCAGTGCCTCCCTCCAGGTATCTTTGATAGCTTTGCTC  350

seq1  ATGTGACCTGGGAAATGTGTGTGCCAAAAATAAACACAAAAACAAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCTGGGAAATGTGTGTGCCAAAAATAAACACAAAAACAAAAACA  400

seq1  ACATGTTCTCCATAGTGTTTTGCCATAGTAAAAGTCAAAGTAAAACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTCTCCATAGTGTTTTGCCATAGTAAAAGTCAAAGTAAAACACAT  450

seq1  GGGTTATCTGGTTCATTTATTTTCTGCTGCACTTTTTTTTCTTTTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATCTGGTTCATTTATTTTCTGCTGCACTTTTTTTTCTTTTTTTTA  500

seq1  ATGTGAAGAAAAGTGGTTTATTAGGCATATTTATATAGTCAGTCCTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGAAAAGTGGTTTATTAGGCATATTTATATAGTCAGTCCTTCTG  550

seq1  TAATTTTCAAGTATTCACTTCTTTTCATTTTAACTGAAGATAGTTAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCAAGTATTCACTTCTTTTCATTTTAACTGAAGATAGTTAAATG  600

seq1  GTTATTTGACTAAGAATGACTTTCAATTTCTATGTTCACCTCTACTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGACTAAGAATGACTTTCAATTTCTATGTTCACCTCTACTTGAA  650

seq1  TAATTAAATGAAGACTAAAGAAAGGATTACCAAGTTCCCATTTCATTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATGAAGACTAAAGAAAGGATTACCAAGTTCCCATTTCATTAAT  700

seq1  TGAAGGTGGGGGTTTCATGATAAACAAAGACCAAGTAAAAGGAGTAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGGGGGTTTCATGATAAACAAAGACCAAGTAAAAGGAGTAAAAA  750

seq1  TTACTGTTGGGTGTCCCTATGCTTTATAAGAAATTCATTATGAATTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTGGGTGTCCCTATGCTTTATAAGAAATTCATTATGAATTAGAA  800

seq1  TTAAAATGTAGTTTAAATAGTGAGCACTGACATTCTGAGCTATTTCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTAGTTTAAATAGTGAGCACTGACATTCTGAGCTATTTCATTC  850

seq1  ATTTCAAATCCAATTCTTAAAACCCTGTAACTGCATTTCC-AAGGCACTA  899
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  ATTTCAAATCCAATTCTT-AAACCCTGTAACTGCATTTCCAAAGGCACTA  899

seq1  CAAGTCCTGACAATAACCTTTCTCCAG-AAAATAATTTC-AGTCAGCA-T  946
      ||||||||||||||||||||||||||| |||||| |||| |||||||| |
seq2  CAAGTCCTGACAATAACCTTTCTCCAGAAAAATATTTTCAAGTCAGCATT  949

seq1  TATCATT-CAATGTAACCAGGAATAAGCAGAAA--TCCAC-TTGAAAT-G  991
      ||||||| ||||||| |  ||||| ||||||||   |||| ||||||| |
seq2  TATCATTCCAATGTACCAGGGAATTAGCAGAAAATCCCACTTTGAAATGG  999

seq1  TCCTCCACAG-AGCT--GAAAGATGAATTC-AAGGA--GATACAAAATGC  1035
      |||||||||| ||||   ||||||||| || |||||   |||||||||||
seq2  TCCTCCACAGAAGCTTGAAAAGATGAAATCAAAGGAAGAATACAAAATGC  1049

seq1  AAAA-TGT--GTAAGA-TGAGGTTTG  1057
      |||| |||   ||||| |||||||||
seq2  AAAATTGTTGTTAAGATTGAGGTTTG  1075


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