BAC Information

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BAC

Clone NameB6Ng01-225D06
Chromosome1 (Build37)
Map Location 164,648,323 - 164,771,166
singlet/doubletdoublet
Overlap geneBat2d, Fmo4, Fmo1
Upstream geneLOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc
Downstream geneFmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225D06.bB6Ng01-225D06.g
ACCGA039457GA039458
length1,1001,187
definitionB6Ng01-225D06.b B6Ng01-225D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,770,130 - 164,771,166)(164,648,323 - 164,649,516)
sequence
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
atcaccgtcgttccccagctgatgagttctgaattcggcagttgaatcct
tctcaacagtctgtgttacgggaacctttataaacgtgatccgcaggtct
ggttctgaaatgaagtatccctcctgcgccagtccggagttttttctcgt
cccggaattcggcaccagttgttattcgtcgcgttctcacgaccggccag
gaagaacacaacaaccagaatcttctacggcaaagctttattgcttacat
ctttttggggccagagtgtaagaagcaagagagagagaaaaacgaaaccc
cttctatttaaaagagaacaacaattgcctaggacgcatcactccctgat
tggctgcagcccatggccgagctgacgttcacgggaaaaacagagtacaa
gtagtcgtaaatacccttggctcatgcgcagattatttgtttaccaactt
agaacacaggatgtcagcgccatcttgtgacggcgaatgtgggggcggct
tcccacataatatacttgaaaggatttttcaaaatctttctgtttgcact
tgatgtctcaatgggatttggcaacaactgcctatccagtgagcccagga
gatgtgaccctggtgttgcacacacaacccttttttctatgaactaactc
tgactcagcgaactcagcctgagctgtggactgtcagcaaacaccttcat
tgtataagaatctttgtaaacagggtcacggcttattgatatcatttctc
tatatcatctaccacaatgcctggcacgttgcgagggtccccagaaattt
tattgaataaaatcagcgattcacttctctgtccttgctccaatttacca
aaagttgcacagcataaataatcacctcgcagccagaacattacctcccc
attgacatccatcacccttgacatggatgataacgcctcacatttttgct
gcagtatgccttatgtcacagtatttcagcctagtagttaatcattcagt
aagttacagcaaaacagctgtctaatgagattattgatgcccgtttacac

gaattcaaacaattcttaacctttaggctctttgttattggccatgaact
atcagttgggcaatttagcaaacccaatgaacttatcttaaaaaaaattt
taaatctgtaatataaaatactcattaacacaaagaactggtaaactaaa
attttatttccacaataattaaaagttgtgatactgcaattaacatttgt
gcttatgtttacttttgagacaaggtctcacacactacgtagtcctgctg
gcctcaaactcatagtgttcaacctgcttttggctcctaagagcagggac
ttaatatgctgtaaaaatatgtggtctaacatgataaagctacttgtgct
actgaggcatgtgacttgtttacctcactattctcacaatcagactttaa
ttagatgctattgagaccaaagatctacatcttccccatttcttgagtcc
caaagtagaatattcttttgactgattgccatgtttagcaatactcacat
atggaggcatcatagctctatactgagaagcaagtgcaggttgctgtcca
ttcagtttggcctgtggaggaccacaagctattctcttttctaccacttt
gagaatatcattttgttctgatgttatagccgtgctttcatcctggccaa
gttgcttttcatcctgatcagaggaaggtgacccagcagacttaccacca
tctctccagcaagcaacatctgggatggaggacaaaaaggattaagaaaa
tattagtaacataacagcaacagcaagcttagcatattttaagaaaatgc
caccaagtacagtaagagtggggatttgctgtcttgtaatgcagactaga
gtcatagattgtgaagcagaaaggctctatgtcaggcagccatgacaacc
catgaaaggagggttatcagcgcttgtataaagctttgtcagtgtttctg
tagtggttcaaaaaccactattcttcacttggactgtcaggtaggcatct
agagggaaggaaggagatagtgaaattcttttacaactcagaaagctgat
gggggatgttcacatcattactttagtcactcttactattacatggacct
aggaggagcgaatccagtgacattatcttgttaccatctcttaatcagta
acacctctggttaggaaatctgtgaaccgaactatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_164770130_164771166
seq2: B6Ng01-225D06.b_101_1141 (reverse)

seq1  GTGTAAA-GGGGATCAATAATCTCATTAGACAGCTGTTTTGCT-TTACTT  48
      ||||||| ||| ||||||||||||||||||||||||||||||| | ||||
seq2  GTGTAAACGGGCATCAATAATCTCATTAGACAGCTGTTTTGCTGTAACTT  50

seq1  ACTAAATGATTAACTACTAAGCTGAAATACTGTGACATAAGGCATACTGC  98
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTGAATGATTAACTACTAGGCTGAAATACTGTGACATAAGGCATACTGC  100

seq1  A-CAAAAATGTGAGGCGTTATCA-CCATGTCAAGGGTGATGGATGTCAAT  146
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCAAAAATGTGAGGCGTTATCATCCATGTCAAGGGTGATGGATGTCAAT  150

seq1  GGGGAGGTAATGTTCTGGTTGCGAGGTGATTATTTATGCTGTGCAACTTT  196
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGGGAGGTAATGTTCTGGCTGCGAGGTGATTATTTATGCTGTGCAACTTT  200

seq1  TGGTAAATGGGAGCAAGGACAGAGAAGTGAATCGCTGATTTTATTCAATA  246
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATTGGAGCAAGGACAGAGAAGTGAATCGCTGATTTTATTCAATA  250

seq1  AAATTTCTGGGGACCCTCGCAACGTGCCAGGCATTGTGGTAGATGATATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGGGGACCCTCGCAACGTGCCAGGCATTGTGGTAGATGATATA  300

seq1  GAGAAATGATATCAATAAGCCGTGACCCTGTTTACAAAGATTCTTATACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGATATCAATAAGCCGTGACCCTGTTTACAAAGATTCTTATACA  350

seq1  ATGAAGGTGTTTGCTGACAGTCCACAGCTCAGGCTGAGTTCGCTGAGTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTGTTTGCTGACAGTCCACAGCTCAGGCTGAGTTCGCTGAGTCA  400

seq1  GAGTTAGTTCATAGAAAAAAGGGTTGTGTGTGCAACACCAGGGTCACATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGTTCATAGAAAAAAGGGTTGTGTGTGCAACACCAGGGTCACATC  450

seq1  TCCTGGGCTCACTGGATAGGCAGTTGTTGCCAAATCCCATTGAGACATCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCTCACTGGATAGGCAGTTGTTGCCAAATCCCATTGAGACATCA  500

seq1  AGTGCAAACAGAAAGATTTTGAAAAATCCTTTCAAGTATATTATGTGGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAACAGAAAGATTTTGAAAAATCCTTTCAAGTATATTATGTGGGA  550

seq1  AGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCCTGTGTTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCCTGTGTTCT  600

seq1  AAGTTGGTAAACAAATAATCTGCGCATGAGCCAAGGGTATTTACGACTAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGTAAACAAATAATCTGCGCATGAGCCAAGGGTATTTACGACTAC  650

seq1  TTGTACTCTGTTTTTCCCGTGAACGTCAGCTCGGCCATGGGCTGCAGCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTCTGTTTTTCCCGTGAACGTCAGCTCGGCCATGGGCTGCAGCCA  700

seq1  ATCAGGGAGTGATGCGTCCTAGGCAATTGTTGTTCTCTTTTAAATAGAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGAGTGATGCGTCCTAGGCAATTGTTGTTCTCTTTTAAATAGAAG  750

seq1  GGGTTTCGTTTTTCTCTCTCTCTTGCTTCTTACACTCTGGCCCCAAAAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCGTTTTTCTCTCTCTCTTGCTTCTTACACTCTGGCCCCAAAAAG  800

seq1  ATGTAAGCAATAAAGCTTTGCCGTAGAAGATTCTGGTTGTTGTGTTCTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGCAATAAAGCTTTGCCGTAGAAGATTCTGGTTGTTGTGTTCTTC  850

seq1  CTGGCCGGTCGTGAGAACGCGACGAATAACAATTGGTGCCGAATTCCGGG  896
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGGCCGGTCGTGAGAACGCGACGAATAACAACTGGTGCCGAATTCCGGG  900

seq1  ACGAGAAAAAACTCCGGACTGGCGCAGGAGGGATACTTCATTTCAGAACC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAAAAAACTCCGGACTGGCGCAGGAGGGATACTTCATTTCAGAACC  950

seq1  AGAACTGCGGATCACGTTTATAAAGGTTCCCGTAACACAGACTGTTGAGA  996
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGCGGATCACGTTTATAAAGGTTCCCGTAACACAGACTGTTGAGA  1000

seq1  AGGATTCAACTGCCGAATTCAGAACTCATCAGCTGGGGAAC  1037
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCAACTGCCGAATTCAGAACTCATCAGCTGGGGAAC  1041

seq1: chr1_164648323_164649516
seq2: B6Ng01-225D06.g_64_1250

seq1  GAATTCAAACAATTCTTAACCTTTAGGCTCTTTGTTATTGGCCATGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAATTCTTAACCTTTAGGCTCTTTGTTATTGGCCATGAACT  50

seq1  ATCAGTTGGGCAATTTAGCAAACCCAATGAACTTATCTTAAAAAAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTGGGCAATTTAGCAAACCCAATGAACTTATCTTAAAAAAAATTT  100

seq1  TAAATCTGTAATATAAAATACTCATTAACACAAAGAACTGGTAAACTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGTAATATAAAATACTCATTAACACAAAGAACTGGTAAACTAAA  150

seq1  ATTTTATTTCCACAATAATTAAAAGTTGTGATACTGCAATTAACATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTCCACAATAATTAAAAGTTGTGATACTGCAATTAACATTTGT  200

seq1  GCTTATGTTTACTTTTGAGACAAGGTCTCACACACTACGTAGTCCTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGTTTACTTTTGAGACAAGGTCTCACACACTACGTAGTCCTGCTG  250

seq1  GCCTCAAACTCATAGTGTTCAACCTGCTTTTGGCTCCTAAGAGCAGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAACTCATAGTGTTCAACCTGCTTTTGGCTCCTAAGAGCAGGGAC  300

seq1  TTAATATGCTGTAAAAATATGTGGTCTAACATGATAAAGCTACTTGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGCTGTAAAAATATGTGGTCTAACATGATAAAGCTACTTGTGCT  350

seq1  ACTGAGGCATGTGACTTGTTTACCTCACTATTCTCACAATCAGACTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTGAGGCATGTGACTTGTTTACCTCACTATTCTCACAATCAGACTTTAA  400

seq1  TTAGATGCTATTGAGACCAAAGATCTACATCTTCCCCATTTCTTGAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGCTATTGAGACCAAAGATCTACATCTTCCCCATTTCTTGAGTCC  450

seq1  CAGAGTAGAATATTCTTTTGACTGATTGCCATGTTTAGCAATACTCACAT  500
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGAATATTCTTTTGACTGATTGCCATGTTTAGCAATACTCACAT  500

seq1  ATGGAGGCATCATAGCTCTATACTGAGAAGCAAGTGCAGGTTGCTGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGCATCATAGCTCTATACTGAGAAGCAAGTGCAGGTTGCTGTCCA  550

seq1  TTCAGTTTGGCCTGTGGAGGACCACAAGCTATTCTCTTTTCTACCACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTGGCCTGTGGAGGACCACAAGCTATTCTCTTTTCTACCACTTT  600

seq1  GAGAATATCATTTTGTTCTGATGTTATAGCCGTGCTTTCATCCTGGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATCATTTTGTTCTGATGTTATAGCCGTGCTTTCATCCTGGCCAA  650

seq1  GTTGCTTTTCATCCTGATCAGAGGAAGGTGACCCAGCAGACTTACCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTTCATCCTGATCAGAGGAAGGTGACCCAGCAGACTTACCACCA  700

seq1  TCTCTCCAGCAAGCAACATCTGGGATGGAGGACAAAAAGGATTAAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGCAAGCAACATCTGGGATGGAGGACAAAAAGGATTAAGAAAA  750

seq1  TATTAGTAACATAACAGCAACAGCAAGCTTAGCATATTTTAAGAAAATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTAACATAACAGCAACAGCAAGCTTAGCATATTTTAAGAAAATGC  800

seq1  CACCAAGTACAGTAAGAGTGGGGATTTGCTGTCTTGTAATGCAGACTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGTACAGTAAGAGTGGGGATTTGCTGTCTTGTAATGCAGACTAGA  850

seq1  GTCATAGATTGTGAAGCAGAAAGGCTCTATGTCAGGCAGCCATGACAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGATTGTGAAGCAGAAAGGCTCTATGTCAGGCAGCCATGACAACC  900

seq1  CATGAAAGGAGGGTTATCAGCGCTTGTATAAAGCTTTGTCAGTGTTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGGAGGGTTATCAGCGCTTGTATAAAGCTTTGTCAGTGTTTCTG  950

seq1  TAGTGGTTCAAAAACCACTATTC-TCACTTGGACTGTCAGGTAGGCATCT  999
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAGTGGTTCAAAAACCACTATTCTTCACTTGGACTGTCAGGTAGGCATCT  1000

seq1  AGAGGGAAGGAAGGAAGATAAGTGAAATTC-TATACAACTCAGAAAAGCT  1048
      |||||||||||||| |||| |||||||||| | |||||||||| ||||||
seq2  AGAGGGAAGGAAGG-AGAT-AGTGAAATTCTTTTACAACTCAG-AAAGCT  1047

seq1  GATGGGGGATGTTCACATCCATTTACTTTAGTCAACTCTTACTAATTACA  1098
      |||||||||||||||||||   ||||||||||| ||||||||| ||||||
seq2  GATGGGGGATGTTCACATC--ATTACTTTAGTC-ACTCTTACT-ATTACA  1093

seq1  TGGGACCA-GAGGAGCAGATTCAGTGACATTATCTTGTTTACATCT-TTA  1146
      |||  | | |||||||  || ||||||||||||||||||  ||||| |||
seq2  TGGACCTAGGAGGAGCGAATCCAGTGACATTATCTTGTTACCATCTCTTA  1143

seq1  ATCAAGTAAAACCACTCTGGTTTTAAGGAAATC-CTGAACAG-ACTATTA  1194
      ||| ||||| ||  ||||||||   ||||||||  ||||| | |||||||
seq2  ATC-AGTAACAC--CTCTGGTT---AGGAAATCTGTGAACCGAACTATTA  1187