BAC Information

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BAC

Clone NameB6Ng01-225E04
Chromosome1 (Build37)
Map Location 43,005,258 - 43,006,391
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3, Mrps9
Downstream geneGpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225E04.bB6Ng01-225E04.g
ACCGA039501GA039502
length1,1331,191
definitionB6Ng01-225E04.b B6Ng01-225E04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttatgagtctgggtgtggtttctggggtctcctttagagggaa
catgaggggaaacacttccagtggacctgatggaccaactgtatttacca
actgtcgtagtttaggttttccagctgtgaactgacaccatgaccaaggt
aacttctataaggacaacatttaattggggctggcttacaggttcagagg
gtcagtccattatcatcaaggcaggagcaggccaacgtctaggcaggcat
ggtgcagcctgagctgagagttctatgtcttcatctaaaggctgctagtg
gaagcctcacttccaggtagctaggaatagggtattaaagccacgcccag
tgacacacccactccaacaaggccatgccttctaatagtgccctggccca
agcatatacaaaccatcacaccaactagcttcagaatgtcacttaatgta
atgtaatgtaattcttccgttgttttcccttggctggcaagtccactcag
ttcacttcttggtacaaaccactctctgagatattctctaattttcttag
tctccaactagcatctgcaagcttccttgctttggggatgactggatttc
ccttggtgtgggagagtaagtggctcaaattcttcatgatgcatagggca
ctttgtggttaataatctactgttcattataatgatctgtagtccctata
agagtaaatgagctggaaccacagatatattactgccttaatttagtcgc
tagcattaggtttattttaaagtattttctctccatttggatggaatttc
tttttatctgagcttatctcaatgttcaataaagtttagcactcccccaa
cagctgggaagcccagatattatacatctcccctcctattaatcttttgt
aagttgatcttaatagccatccagctcattcatcactgcaagctggtccg
cttacatttgtatggtcttccaattagctagctggaactctattcttcat
ctagaactaagttccttggtcatttaatagtttaagagttctcccctcag
agtgtcaacgtccgcaaagaccaatgggatgcttaataacatcctcgtct
gttcggcctataccattccagggtctgtggaaa
gaattcaagacccaggcctaaacataataaaagcaatttactgcaaacca
atatcaaattaaatgaagacatacttgaagcaattccacagaatctgggg
agaagacaagggtgcccactctccccagatctattcaacatagtacctga
agagctggctagaactatcagacatcaaaatgagatcaaggggatacaaa
ttggcaaagaagaaataaaggtatcactatttgcagatgatatgatagta
tatataagcgaccccaaaaattctaccagagaacttctccagctgataaa
caacttcagccaagtggccggatatagaattaactcaaataaatcagtag
ccttcctttatacaaatgatatacagctaagaaagaaattaggtaaacaa
ctcccttcacaataccacaaataatataaaataccttggggtaactctaa
ccaaacaagtgaaagacctgtatgacagtaacttcaagtttctcaagaaa
gaaattgaagaagatctcagaaaatggagagatctcccatgcacatggat
cagcagaattaacagtaaaaatggccatcctaccaaaggcaatctataga
ttcaatgcaatccccatcaaaatcccaacacaatttttcatggaaagagc
aattctcaaattcatctggaaaggcaaaaaacccagaataggaaaacaac
tcttaacaataaaagagtgactgggggaatcaccagccctgacctcaaga
tttactacagagcaatagtgataaaaactgcatggtactggtacagaggc
agacatgttgatcaatggaatagaattgaagacccagaaataaaaccaca
catttatgaacacttgatctttgacaaagaagccaaaaatatacaatggg
aaaaaagaaagcatcttcaataaatggtgctggtctaactggctgtcagt
atatagaaaaataaaaatacacccatatctgtcaccttgcccaaagctca
agtccagtagatcaaggacctttaaaataaaacagatacactgatctaga
gaagagaaagtgggaaagaacctggaccactgcacagagggaaattctaa
accgacttcaatgctcacgctctagaatcaagatgataactgaactcatg
aactgggaagttctggttaagccaaaggtacaccattaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_43005258_43006391
seq2: B6Ng01-225E04.b_47_1179

seq1  GAATTCTTTATGAGTCTGGGTGTGG-TTCTGGGGTCTCCTTTAGAGGGAA  49
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAATTCTTTATGAGTCTGGGTGTGGTTTCTGGGGTCTCCTTTAGAGGGAA  50

seq1  CATGAGGGGAAACACTTCCAGTGGACCTGATGGACCAACTGTATTTACCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGGGAAACACTTCCAGTGGACCTGATGGACCAACTGTATTTACCA  100

seq1  ACTGTCGTAGTTTAGGTTTTCCAGCTGTGAACTGACACCATGACCAAGGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCGTAGTTTAGGTTTTCCAGCTGTGAACTGACACCATGACCAAGGT  150

seq1  AACTTCTATAAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTATAAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGG  200

seq1  GTCAGTCCATTATCATCAAGGCAGGAGCAGGCCAACGTCTAGGCAGGCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCCATTATCATCAAGGCAGGAGCAGGCCAACGTCTAGGCAGGCAT  250

seq1  GGTGCAGCCTGAGCTGAGAGTTCTATGTCTTCATCTAAAGGCTGCTAGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGCCTGAGCTGAGAGTTCTATGTCTTCATCTAAAGGCTGCTAGTG  300

seq1  GAAGCCTCACTTCCAGGTAGCTAGGAATAGGGTATTAAAGCCACGCCCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTCACTTCCAGGTAGCTAGGAATAGGGTATTAAAGCCACGCCCAG  350

seq1  TGACACACCCACTCCAACAAGGCCATGCCTTCTAATAGTGCCCTGGCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACCCACTCCAACAAGGCCATGCCTTCTAATAGTGCCCTGGCCCA  400

seq1  AGCATATACAAACCATCACACCAACTAGCTTCAGAATGTCACTTAATGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATACAAACCATCACACCAACTAGCTTCAGAATGTCACTTAATGTA  450

seq1  ATGTAATGTAATTCTTCCGTTGTTTTCCCTTGGCTGGCAAGTCCACTCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATGTAATTCTTCCGTTGTTTTCCCTTGGCTGGCAAGTCCACTCAG  500

seq1  TTCACTTCTTGGTACAAACCACTCTCTGAGATATTCTCTAATTTTCTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTCTTGGTACAAACCACTCTCTGAGATATTCTCTAATTTTCTTAG  550

seq1  TCTCCAACTAGCATCTGCAAGCTTCCTTGCTTTGGGGATGACTGGATTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAACTAGCATCTGCAAGCTTCCTTGCTTTGGGGATGACTGGATTTC  600

seq1  CCTTGGTGTGGGAGAGTAAGTGGCTCAAATTCTTCATGATGCATAGGGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTGTGGGAGAGTAAGTGGCTCAAATTCTTCATGATGCATAGGGCA  650

seq1  CTTTGTGGTTAATAATCTACTGTTCATTATAATGATCTGTAGTCCCTATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGTTAATAATCTACTGTTCATTATAATGATCTGTAGTCCCTATA  700

seq1  AGAGTAAATGAGCTGGAACCACAGATATATTTACTGCCTTAATTTAGTCG  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAGTAAATGAGCTGGAACCACAGATATA-TTACTGCCTTAATTTAGTCG  749

seq1  CTAGCATTAGGTTTATTTTAAAGTATTTTCTCTCCATTTGGATGGAATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTAGGTTTATTTTAAAGTATTTTCTCTCCATTTGGATGGAATTT  799

seq1  C-TTTTATCTGAGCTTATCTTCAATG-TCAAT-AAGTTTAGCACT-CCCC  845
      | ||||||||||||||||| |||||| ||||| |||||||||||| ||||
seq2  CTTTTTATCTGAGCTTATC-TCAATGTTCAATAAAGTTTAGCACTCCCCC  848

seq1  AACAGCT-GGAAGCCCAGATATTATACATCTCCCCTCCTATTAATCTTTT  894
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGGGAAGCCCAGATATTATACATCTCCCCTCCTATTAATCTTTT  898

seq1  GTAAGTTGATCTTTATAGCCATCAAGCCCATTCATCACTGCAAGCT-GTC  943
      ||||||||||||| ||||||||| ||| |||||||||||||||||| |||
seq2  GTAAGTTGATCTTAATAGCCATCCAGCTCATTCATCACTGCAAGCTGGTC  948

seq1  CGCTTACATTTGTATGGTCTTCCATTTAGCTAGCT-GAACTCTATTTCTT  992
      |||||||||||||||||||||||| |||||||||| |||||||| |||||
seq2  CGCTTACATTTGTATGGTCTTCCAATTAGCTAGCTGGAACTCTA-TTCTT  997

seq1  CATCTAG-ACTAAAGTTCTTTGTCATTTTAATAGTTTATAGAGTTCT-CC  1040
      ||||||| |||||  | ||| |||| |||||||||||| |||||||| ||
seq2  CATCTAGAACTAAGTTCCTTGGTCA-TTTAATAGTTTA-AGAGTTCTCCC  1045

seq1  CTCAGAGTGTCAGACTGCCCGCAAAGAACAAATGGATGC-TAATAACATC  1089
      |||||||||||| || | ||||||||| |||  |||||| ||||||||| 
seq2  CTCAGAGTGTCA-AC-GTCCGCAAAGACCAATGGGATGCTTAATAACAT-  1092

seq1  CCTCGTTCTGTTTCGTCTTAACCCATTCCCAAGGCTCTGTGGAAA  1134
      ||||| |||| |||| | ||  |||||||  ||| ||||||||||
seq2  CCTCG-TCTG-TTCGGCCTATACCATTCC--AGGGTCTGTGGAAA  1133