BAC Information

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BAC

Clone NameB6Ng01-225I12
Chromosome1 (Build37)
Map Location 52,935,235 - 52,936,125
singlet/doubletsinglet
Overlap geneHibch
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1
Downstream gene1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225I12.bB6Ng01-225I12.g
ACCGA039701GA039702
length1,009934
definitionB6Ng01-225I12.b B6Ng01-225I12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcataaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
acccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaattaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcatgcgagactatgccggggccctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcacagggcctcc
caatggaggagctagagaaagtacccaaggagctaaagggatctgcaacc
ctataggtg
gaattcattgttttactgttgagaagccttgcatagaaagactcaataga
aaaggttgtgtataggaatatatgggagtgaggggtgtggtatacacaga
gctaagtctaggatgaaattcttaagcatacagtattctttttttttttt
tttccctgagacaggagacagggtttctctgtgtagccttggctggcctc
gaactcactctgtagaccaggctggcctcgaactcagaaatccgcctgcc
tctgcctcccaagttctgggattaaaggcgtgcgccaccacgcccggcag
cacacagtattcttaaccaggggcagaagatgaaagctaaagaagacact
gaggaaggagagtgggtggaggactggaagacaacagcaagccaggagag
tggagctgtctgaaaccttcttgttggcttctgtgctccagagatctttg
gcaattctttacattgccataagcaatgtttttcagctcatcctatgcac
tttgttcaaatccccttgttctctagggcagttctggctatttgattaga
aaatggtggtgagtaattacatacactgggcaccagaagcttgctggttg
tttctaggcttttcagtaaaattatgaattatattttgtttaaagataaa
aatgaataggccaccgactcaataaatttcctatcaaaatttgaagtttt
taggcttatttaatgttttaaaatccttttttatgttggaagatttcact
tcctgccaggaaatcaggtaggccaaatgcaaatctttacctctcccttc
tattcctccaaggtccaatcccacagtctcatccgcatcctcggcaggca
gaggcacctgctaacagccttaccccacttaatttgtaggtggatcctac
aagaatcttcttctttcttgtcttcttccccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52935235_52936125
seq2: B6Ng01-225I12.g_64_974

seq1  GAATTCATTGTTTTACTGTTGAGAAGCCTTGCATAGAAAGACTCAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTTACTGTTGAGAAGCCTTGCATAGAAAGACTCAATAGA  50

seq1  AAAGGTTGTGTATAGGAATATATGGGAGTGAGGGGTGTGGTATACACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGTGTATAGGAATATATGGGAGTGAGGGGTGTGGTATACACAGA  100

seq1  GCTAAGTCTAGGATGAAATTCTTAAGCATACAGTATTCTTTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTCTAGGATGAAATTCTTAAGCATACAGTATTCTTTTTTTTTTTT  150

seq1  TTTCCCTGAGACAGGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGAGACAGGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGGCCTC  200

seq1  GAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  250

seq1  TCTGCCTCCCAAGTTCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTTCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCAG  300

seq1  CACACAGTATTCTTAACCAGGGGCAGAAGATGAAAGCTAAAGAAGACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTATTCTTAACCAGGGGCAGAAGATGAAAGCTAAAGAAGACACT  350

seq1  GAGGAAGGAGAGTGGGTGGAGGACTGGAAGACAACAGCAAGCCAGGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGAGAGTGGGTGGAGGACTGGAAGACAACAGCAAGCCAGGAGAG  400

seq1  TGGAGCTGTCTGAAACCTTCTTGTTGGCTTCTGTGCTCCAGAGATCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGTCTGAAACCTTCTTGTTGGCTTCTGTGCTCCAGAGATCTTTG  450

seq1  GCAATTCTTTACATTGCCATAAGCAATGTTTTTCAGCTCATCCTATGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCTTTACATTGCCATAAGCAATGTTTTTCAGCTCATCCTATGCAC  500

seq1  TTTGTTCAAATCCCCTTGTTCTCTAGGGCAGTTCTGGCTATTTGATTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAAATCCCCTTGTTCTCTAGGGCAGTTCTGGCTATTTGATTAGA  550

seq1  AAATGGTGGTGAGTAATTACATACACTGGGCACCAGAAGCTTGCTGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTGGTGAGTAATTACATACACTGGGCACCAGAAGCTTGCTGGTTG  600

seq1  TTTCTAGGCTTTTCAGTAAAATTATGAA-TATATTTTGTTT-AAGAT-AA  647
      |||||||||||||||||||||||||||| |||||||||||| ||||| ||
seq2  TTTCTAGGCTTTTCAGTAAAATTATGAATTATATTTTGTTTAAAGATAAA  650

seq1  AATGAATAGGCCACCGACTCAATAA--TTCCTATCAAAA-TTGAAG-TTT  693
      |||||||||||||||||||||||||  |||||||||||| |||||| |||
seq2  AATGAATAGGCCACCGACTCAATAAATTTCCTATCAAAATTTGAAGTTTT  700

seq1  TAGGCTTATTTAATG-TTTAAAAT-CTTTTTTATGTTGGAAGATTTCAC-  740
      ||||||||||||||| |||||||| |||||||||||||||||||||||| 
seq2  TAGGCTTATTTAATGTTTTAAAATCCTTTTTTATGTTGGAAGATTTCACT  750

seq1  TCCTGCCAGGAAATCAGGTAGGCC-AATGCAGATCTTCACCTCTCCC-TC  788
      |||||||||||||||||||||||| |||||| ||||| ||||||||| ||
seq2  TCCTGCCAGGAAATCAGGTAGGCCAAATGCAAATCTTTACCTCTCCCTTC  800

seq1  TATTCCTCCAA-GTCCAATCCCACAGTCTCATCCGCAT-CTCGGCA-GCA  835
      ||||||||||| |||||||||||||||||||||||||| ||||||| |||
seq2  TATTCCTCCAAGGTCCAATCCCACAGTCTCATCCGCATCCTCGGCAGGCA  850

seq1  GA-GCACCTGC-AACAGCCTTACCCCACTTAATTTGTA-GTGGATCCTAC  882
      || |||||||| |||||||||||||||||||||||||| |||||||||||
seq2  GAGGCACCTGCTAACAGCCTTACCCCACTTAATTTGTAGGTGGATCCTAC  900

seq1  A--GATCTTCT  891
      |   |||||||
seq2  AAGAATCTTCT  911