BAC Information

Click to search

BAC

Clone NameB6Ng01-226D07
Chromosome1 (Build37)
Map Location 151,671,016 - 151,671,852
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042792, LOC435647, LOC100042813
Downstream genePla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226D07.bB6Ng01-226D07.g
ACCGA040206GA040207
length1,2271,138
definitionB6Ng01-226D07.b B6Ng01-226D07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacataaaaccagagacagtgaactttatagaggagaaagtggg
gaaaagccttgaacatatgggcacaggggaaaaattcctaaacagaacag
caatggcctgtgctgtaagatcaagaatcaacaaatgggacctcataaaa
ttgcaaagcttctgtaaggcaaaagacactgtcaattagactaaaaggcc
accaacagattgggaaaggatttttaccaatcctaaatttgataggggac
taatatccaatatatacaaagagctcaagaagctggactccaaaaattca
aataactccattaaaaaatggggtacaaaactaaacaaagaattctcaac
tgaggaaaaccgaagggctgagaagcacttgaaaaaaatgttcaatatcc
ttaatcaccagggaaatacaaaccaaaataaccctgagattccacctcat
accagtcagaatggttaagatcaaaaattcatgtgacaacagatgctggt
gaggatgtggagaaaggggaacactccaccattgctggtgggattgcaag
gttgtacaaccactgtaaaaatcagtctggcagttcctcagaaaattgga
catagtactactggaagatccagcaatacctctcctgggcatatacccag
aagatgttccaactggtaataaggacacatgctccactatgttcatagca
gccttatttataatagcgagaagctggaaagaacccaaatgtcccttaac
agaggaatggatacagaaaatgtggtacatttacactatggagtactact
cagctattaaaacaatgaatttatgaaattcttgggcaaatggatatatc
tggaggatatcatcctgagtgaggtaacccattcagaaaagaagtcactt
gatatgcactcactgacaagtggttgttagcccagaaacttagaataccc
aagatactattgcaaaacacaagaaaatcaagaagaaggaagaccaacgc
gtggatacttcattcctccttagataagaacaaaatacccatggaagagt
ttcagagacaaagtgtgagttagatgaagatgacatccagagactcccca
ctgggatctatccataatcagccacaatcagaaccttattgcatatgcca
gcagattgctgaacggaaccctgaatatagcctgtcttctgggtagagct
atggcaaggtgccttggccaaaatctc

gaattcattgttaacaactgggatcaacaagggctccacctaagattcgc
ttaatcttagaagccagggtcaagggcttcgtgcccttgccatagttcct
attttagtctactgtatagtccaccttccccttaagcgattgtaaatacg
tgtgtatgggtaactcagctatagtcttagaagccaggtgtgaggtcttt
actctcctagggcaagggctttcacacccaagttatggttctaactaggt
agttctgttctagctaaccatctcatgaataatgaaatactctaaaacca
cagcccgatctacgtcctaaaccattgtaaattcctatatatgggagcga
cttggcttttattctaagtgatagtgtaatatcagaggttattttgaata
tcagtgaaaacaacattcttcctgaattgcaagcccatggtcttgctcaa
ggacattctaggactgttggaacactggcggaagactttagctatgtcag
agttcaatcttaaaaggcacttgtaataggataatactaaaagagagcac
gggatccatacactagactaactcgggaatggaaaattcatgtatgggtt
agagagaacaccagactccagaagtgagtttccgtgaaactcttttgcct
tgtgagtagctttcaagcctctcagcttgtcaaactgactcgaccagagt
gcgtggcaatagtggactaaacctctgaacctgtaagacactcccaatta
aatgttgtcctttataaaaattgccttggtcatggtatttgttcacagca
gtaaaaccctaagacaaagggaaaagatgaaaagtggttttagcttttat
ttgtatgttcttagttctccaaaatgtttctataaatgttctcctccaaa
atgttctctctaaaggttctccaaaaagttctctaagaaagttctctctt
gttctcataaagttctctctcatctcttttctctaatgtgctcggtcctc
tcataatgccctactcagtcattactcacaaagtttgccctacttctaag
ttcatcatgaattcaggttctgtctctttcttgtcttcagcactaataca
tcttccagaatacatgattcacatgataaagttcacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_151671016_151671852
seq2: B6Ng01-226D07.g_380_1204

seq1  GTCCTAAACCATTGTAAATTCCTATATATGGGAGCGACTTGGCTTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAACCATTGTAAATTCCTATATATGGGAGCGACTTGGCTTTTATT  50

seq1  CTAAGTGATAGTGTAATATCAGAGGTTATTTTGAATATCAGTGAAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGATAGTGTAATATCAGAGGTTATTTTGAATATCAGTGAAAACAA  100

seq1  CATTCTTCCTGAATTGCAAGCCCATGGTCTTGCTCAAGGACATTCTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCCTGAATTGCAAGCCCATGGTCTTGCTCAAGGACATTCTAGGA  150

seq1  CTGTTGGAACACTGGCGGAAGACTTTAGCTATGTCAGAGTTCAATCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGAACACTGGCGGAAGACTTTAGCTATGTCAGAGTTCAATCTTAA  200

seq1  AAGGCACTTGTAATAGGATAATACTAAAAGAGAGCACGGGATCCATACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACTTGTAATAGGATAATACTAAAAGAGAGCACGGGATCCATACAC  250

seq1  TAGACTAACTCGGGAATGGAAAATTCATGTATGGGTTAGAGAGAACACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAACTCGGGAATGGAAAATTCATGTATGGGTTAGAGAGAACACCA  300

seq1  GACTCCAGAAGTGAGTTTCCGTGAAACTCTTTTGCCTTGTGAGTAGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGAAGTGAGTTTCCGTGAAACTCTTTTGCCTTGTGAGTAGCTTT  350

seq1  CAAGCCTCTCAGCTTGTCAAACTGACTCGACCAGAGTGCGTGGCAATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTCTCAGCTTGTCAAACTGACTCGACCAGAGTGCGTGGCAATAGT  400

seq1  GGACTAAACCTCTGAACCTGTAAGACACTCCCAATTAAATGTTGTCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAACCTCTGAACCTGTAAGACACTCCCAATTAAATGTTGTCCTTT  450

seq1  ATAAAAATTGCCTTGGTCATGGTATTTGTTCACAGCAGTAAAACCCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTGCCTTGGTCATGGTATTTGTTCACAGCAGTAAAACCCTAAG  500

seq1  ACAAAGGGAAAAGATGAAAAGTGGTTTTAGCTTTTATTTGTATGTTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGAAAAGATGAAAAGTGGTTTTAGCTTTTATTTGTATGTTCTTA  550

seq1  GTTCTCCAAAATGTTTCTATAAATGTTCTCCTCCAAAATGTTCTCTCTAA  600
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTTCTCCAAAATGTTTCTATAAATGTTCTCCTCCAAAATGTTCTCTCT-A  599

seq1  AAGGTTCTCCAAAAAGTTCTCTAAGAAAGTTCTCTCTTGTTCTCATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTCCAAAAAGTTCTCTAAGAAAGTTCTCTCTTGTTCTCATAAAG  649

seq1  TTCTCTCTCATCTCTTTTTCTCCTAATGTTGCTCGTTCCTCCTCATAATG  700
      |||||||||||||| |||||| |||||| |||||| |||| |||||||||
seq2  TTCTCTCTCATCTC-TTTTCT-CTAATG-TGCTCGGTCCT-CTCATAATG  695

seq1  CCCTTACTTCCAGTCATTACTCACAAAGTTTTGCCCTTACTTCTAAGTTC  750
      ||| ||||  |||||||||||||||||| ||||||| |||||||||||||
seq2  CCC-TACT--CAGTCATTACTCACAAAG-TTTGCCC-TACTTCTAAGTTC  740

seq1  ATCATGAATTCA-GTTCTGTCTCCTTTCTTGTCCTCAGCACTTAATACAT  799
      |||||||||||| ||||||||| |||||||||| ||||||| ||||||||
seq2  ATCATGAATTCAGGTTCTGTCT-CTTTCTTGTCTTCAGCAC-TAATACAT  788

seq1  CTTTCAGAATACATGA-TCACATGATAAAAGGTTCACCA  837
      ||| |||||||||||| ||||||||||||  ||||||||
seq2  CTTCCAGAATACATGATTCACATGATAAA--GTTCACCA  825


| Home | SequenceCutter | Blast | Download |