BAC Information

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BAC

Clone NameB6Ng01-226M24
Chromosome1 (Build37)
Map Location 158,813,764 - 158,979,806
singlet/doubletdoublet
Overlap geneRalgps2, 4930439D14Rik
Upstream geneCep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Angptl1
Downstream gene1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226M24.bB6Ng01-226M24.g
ACCGA040644GA040645
length1,0701,130
definitionB6Ng01-226M24.b B6Ng01-226M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,813,764 - 158,814,843)(158,978,675 - 158,979,806)
sequence
gaattccagaaaatccagggctacacagagaaaccctgtcttgaaaaaca
aaaagacattaatcttttaaaaaatatatagtaatattttcagcacggta
tatggtccacctgtaatcctagtacttgtgaggctgaggcagaaccatga
ctttaaagctagcttgggctataaaaaaagactgtgtgtgtgtgtacgcg
cacacaccccttcatagaggctagtatatcaggcttataactccagctac
ttgactggccaagaaaggaagtccccaacttgaaagcaactttgggtgac
ttagcaagataccttaaacgaggccgtagtttcaaaataagaaataaaag
aaagaaaaggggaagagataacctagaaagattgagtatggtatcattct
actcagagatacaaatactgatcatgccaaaaatcatactttgcttttgt
caaagtaacagaacctaatatggtggctgttgtaacagaaagtagcatgt
ttatcatgagatttttctatactcaagatttatggctaaaaaataatgga
gtcaaaattaataaaagaactttaaaggtcatgatttagattttcagatt
tacaagaagtataatctgtacacaattaaattctaattatcaggtaagta
ttacatgtgatattatcaacaaggtatgaaaatgattctctgaagagcaa
aataagcactgccctcaacattccctcaaaagctcagtgcaatgttttaa
aagtcttaaatgttggtttcaaagaacaaagtgcaagacaatttaagaat
tcttatctattatatttgtctaagacttacaaaagaaacaaataatattt
ctacttcgcacaaaagtctatgcttcattaaactaggcagagttactcac
cgcccacgtcttagtcaaccggaaaatcggcgcactctgtaagccagaaa
ccacagcccataagtgcgtgaaggttgttaagttcatatagtttctgaga
tttagaaaagggggaagagattgttttttagaaaatgactgcagaataca
gattagcacaattagcagtg
gaattctgtgtgggagaaataaagagaaggaggaggaagaagaagaggat
gaggaagaaagttctatacctttagagcaatgcagatatagagtgtaaca
ggacccctgtttattagcctggacttttggggccactaagactccatacg
cacaaagagatgggagctgctggggcagagagacctgaggcacagccctt
ctcagcacacacagctgccaacctcttctcccttcagacttcagacatcc
tcagtcagtgaggcagcttcctcctccaggttctgggatctatagcacaa
tggagacctgcattaagtcctaggagcaagtacacagcgtagagcagctc
cctggaaagagagctcaaagtgggatgaaggaagaaaataggatggaagg
aagcctgctggtgagaagctggaccaggccagaaagggtccgaagtgtgg
ctggttagcctgtagaataccgggtaatgggatgaccaggctgggctggc
actaatggggtcctggggatatcttaggcctagggtagaacaatgaaggc
aatcacttcctaacactaaggtaattgggtaagccaaaccaagtgtggtg
acttgtacctataatccctacaagaggcttgccatgaatttaaggtcagc
ctaggcaatacattgagatctgccccacccccaaagtgagcaggggggcc
tcagtgaaccctcagatccacacttaaaatccacgatgttcagatttggt
tggaagaagggaataaatagctgtgtctattctccaaccttaccacacag
ccatactctggagctgaaccggtgacccaagcaaaagccaatccagactc
caccctgctctggcataaggcaagtttctgcctgcctgtgtggaggaaac
ggctaagcgtggccctctacacttttcaatccagccagagcctaacttta
gccctatgcaaaaccacgccggctgcctcggtccatcttgcacctgtggt
tatttgatgcctgtgctgccgcccggtgggggccagtcttagggctgaaa
cctttcagatcttaactcttgttccccttagcaaccactcccctcatacc
ctcccacccaaaggcaagctgttctcattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_158813764_158814843
seq2: B6Ng01-226M24.b_48_1117

seq1  GAATTCCAGAAAATCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAATCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACA  50

seq1  AAAAGACATTAATCTTTTAAAAAATATATAGTAATATTTTCAGCACGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACATTAATCTTTTAAAAAATATATAGTAATATTTTCAGCACGGTA  100

seq1  TATGGTCCACCTGTAATCCTAGTACTTGTGAGGCTGAGGCAGAACCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCCACCTGTAATCCTAGTACTTGTGAGGCTGAGGCAGAACCATGA  150

seq1  CTTTAAAGCTAGCTTGGGCTATAAAAAAAGACTGTGTGTGTGTGTACGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGCTAGCTTGGGCTATAAAAAAAGACTGTGTGTGTGTGTACGCG  200

seq1  CACACACCCCTTCATAGAGGCTAGTATATCAGGCTTATAACTCCAGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCCCTTCATAGAGGCTAGTATATCAGGCTTATAACTCCAGCTAC  250

seq1  TTGACTGGCCAAGAAAGGAAGTCCCCAACTTGAAAGCAACTTTGGGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGGCCAAGAAAGGAAGTCCCCAACTTGAAAGCAACTTTGGGTGAC  300

seq1  TTAGCAAGATACCTTAAACGAGGCCGTAGTTTCAAAATAAGAAATAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAGATACCTTAAACGAGGCCGTAGTTTCAAAATAAGAAATAAAAG  350

seq1  AAAGAAAAGGGGAAGAGATAACCTAGAAAGATTGAGTATGGTATCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGGGGAAGAGATAACCTAGAAAGATTGAGTATGGTATCATTCT  400

seq1  ACTCAGAGATACAAATACTGATCATGCCAAAAATCATACTTTGCTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGATACAAATACTGATCATGCCAAAAATCATACTTTGCTTTTGT  450

seq1  CAAAGTAACAGAACCTAATATGGTGGCTGTTGTAACAGAAAGTAGCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAACAGAACCTAATATGGTGGCTGTTGTAACAGAAAGTAGCATGT  500

seq1  TTATCATGAGATTTTTCTATACTCAAGATTTATGGCTAAAAAATAATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATGAGATTTTTCTATACTCAAGATTTATGGCTAAAAAATAATGGA  550

seq1  GTCAAAATTAATAAAAGAACTTTAAAGGTCATGATTTAGATTTTCAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATTAATAAAAGAACTTTAAAGGTCATGATTTAGATTTTCAGATT  600

seq1  TACAAGAAGTATAATCTGTACACAATTAAATTCTAATTATCAGGTAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAAGTATAATCTGTACACAATTAAATTCTAATTATCAGGTAAGTA  650

seq1  TTACATGTGATATTATCAACAAGGTATGAAAATGATTCTCTGAAGAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTGATATTATCAACAAGGTATGAAAATGATTCTCTGAAGAGCAA  700

seq1  AATAAGCACTGCCCTCAACATTCCCTCAAAAGCTCAGTGCAATGTTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCACTGCCCTCAACATTCCCTCAAAAGCTCAGTGCAATGTTTTAA  750

seq1  AAGTCTTAAATGTTGGTTTCAAAGAACAAAGTGCAAGACAATTTAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTAAATGTTGGTTTCAAAGAACAAAGTGCAAGACAATTTAAGAAT  800

seq1  TCTTATCTATTATATTTGTCTAAGACTTACAAAAGAAACAAATAATATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTATTATATTTGTCTAAGACTTACAAAAGAAACAAATAATATTT  850

seq1  CTACTTCGCACAAAAGTCTATGCTTCATTAAACTAGGCAGAGTTACTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCGCACAAAAGTCTATGCTTCATTAAACTAGGCAGAGTTACTCAC  900

seq1  CGCCCACGTCTTAGTCAACCGGAAAATCGGCGCACTCTGTAAGCCAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCACGTCTTAGTCAACCGGAAAATCGGCGCACTCTGTAAGCCAGAAA  950

seq1  CCACAG-CCATAAGTGCGTGAAGGTTGTTAAGTTCATATAGTTTCTGAAG  999
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  CCACAGCCCATAAGTGCGTGAAGGTTGTTAAGTTCATATAGTTTCTG-AG  999

seq1  ATTTAAGAAAAAGGGGGAAGAGGATTGTTTTTTTAAGAAAATGACTGCAG  1049
      |||||   ||||||||||||| |||||||||||  |||||||||||||||
seq2  ATTTA--GAAAAGGGGGAAGA-GATTGTTTTTT--AGAAAATGACTGCAG  1044

seq1  GGAAATACAGATTAGCACAATTTAGGCAGTG  1080
         |||||||||||||||||||   ||||||
seq2  ---AATACAGATTAGCACAATT--AGCAGTG  1070

seq1: chr1_158978675_158979806
seq2: B6Ng01-226M24.g_68_1197 (reverse)

seq1  GAATGAAGAACAGCTTTGCCTGTGGGGTGGGAGGGTATGAGGGAGTTGGT  50
      ||||| |||||||| |||||| | |||||||||||||||||||   ||||
seq2  GAATG-AGAACAGC-TTGCCT-TTGGGTGGGAGGGTATGAGGGGAGTGGT  47

seq1  TGCTAAGGGAACAAAGAGTTTAAGAATCTGAAAGGTTTTCAGCCCTAGAA  100
      ||||||||| |  ||||| ||||| |||||||||| |||||||||||  |
seq2  TGCTAAGGGGAACAAGAG-TTAAG-ATCTGAAAGG-TTTCAGCCCTAAGA  94

seq1  CTGG-CCCCACCGGGCGGCAGCACAGGCATTCAAAT-ACCACAGGTGCAA  148
      |||| |||||||||||||||||||||||| |||||| |||||||||||||
seq2  CTGGCCCCCACCGGGCGGCAGCACAGGCA-TCAAATAACCACAGGTGCAA  143

seq1  GATGGACCGAGGCAGCCGGCGTGGTTTTGCATA-GGCTAAAGTTAGGCTC  197
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GATGGACCGAGGCAGCCGGCGTGGTTTTGCATAGGGCTAAAGTTAGGCTC  193

seq1  TGGCTGGATTG-AAAGTGTAGA-GGCCACGCTTAGCCGTTTCCTCCACAC  245
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  TGGCTGGATTGAAAAGTGTAGAGGGCCACGCTTAGCCGTTTCCTCCACAC  243

seq1  AGGCAGGCAGAAACTTGCCTTATGCCAGAGCAGGGTGGAGTCTGGATTGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCAGAAACTTGCCTTATGCCAGAGCAGGGTGGAGTCTGGATTGG  293

seq1  CTTTTGCTTGGGTCACCGGTTCAGCTCCAGAGTATGGCTGTGTGGTAAGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTTGGGTCACCGGTTCAGCTCCAGAGTATGGCTGTGTGGTAAGG  343

seq1  TTGGAGAATAGACACAGCTATTTATTCCCTTCTTCCAACCAAATCTGAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAATAGACACAGCTATTTATTCCCTTCTTCCAACCAAATCTGAAC  393

seq1  ATCGTGGATTTTAAGTGTGGATCTGAGGGTTCACTGAGGCCCCCCTGCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGGATTTTAAGTGTGGATCTGAGGGTTCACTGAGGCCCCCCTGCTC  443

seq1  ACTTTGGGGGTGGGGCAGATCTCAATGTATTGCCTAGGCTGACCTTAAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGGGGTGGGGCAGATCTCAATGTATTGCCTAGGCTGACCTTAAAT  493

seq1  TCATGGCAAGCCTCTTGTAGGGATTATAGGTACAAGTCACCACACTTGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCAAGCCTCTTGTAGGGATTATAGGTACAAGTCACCACACTTGGT  543

seq1  TTGGCTTACCCAATTACCTTAGTGTTAGGAAGTGATTGCCTTCATTGTTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTACCCAATTACCTTAGTGTTAGGAAGTGATTGCCTTCATTGTTC  593

seq1  TACCCTAGGCCTAAGATATCCCCAGGACCCCATTAGTGCCAGCCCAGCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTAGGCCTAAGATATCCCCAGGACCCCATTAGTGCCAGCCCAGCCT  643

seq1  GGTCATCCCATTACCCGGTATTCTACAGGCTAACCAGCCACACTTCGGAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCCCATTACCCGGTATTCTACAGGCTAACCAGCCACACTTCGGAC  693

seq1  CCTTTCTGGCCTGGTCCAGCTTCTCACCAGCAGGCTTCCTTCCATCCTAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGGCCTGGTCCAGCTTCTCACCAGCAGGCTTCCTTCCATCCTAT  743

seq1  TTTCTTCCTTCATCCCACTTTGAGCTCTCTTTCCAGGGAGCTGCTCTACG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTTCATCCCACTTTGAGCTCTCTTTCCAGGGAGCTGCTCTACG  793

seq1  CTGTGTACTTGCTCCTAGGACTTAATGCAGGTCTCCATTGTGCTATAGAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACTTGCTCCTAGGACTTAATGCAGGTCTCCATTGTGCTATAGAT  843

seq1  CCCAGAACCTGGAGGAGGAAGCTGCCTCACTGACTGAGGATGTCTGAAGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAACCTGGAGGAGGAAGCTGCCTCACTGACTGAGGATGTCTGAAGT  893

seq1  CTGAAGGGAGAAGAGGTTGGCAGCTGTGTGTGCTGAGAAGGGCTGTGCCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGAGAAGAGGTTGGCAGCTGTGTGTGCTGAGAAGGGCTGTGCCT  943

seq1  CAGGTCTCTCTGCCCCAGCAGCTCCCATCTCTTTGTGCGTATGGAGTCTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTCTCTGCCCCAGCAGCTCCCATCTCTTTGTGCGTATGGAGTCTT  993

seq1  AGTGGCCCCAAAAGTCCAGGCTAATAAACAGGGGTCCTGTTACACTCTAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCCCAAAAGTCCAGGCTAATAAACAGGGGTCCTGTTACACTCTAT  1043

seq1  ATCTGCATTGCTCTAAAGGTATAGAACTTTCTTCCTCATCCTCTTCTTCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATTGCTCTAAAGGTATAGAACTTTCTTCCTCATCCTCTTCTTCT  1093

seq1  TCCTCCTCCTTCTCTTTATTTCTCCCACACAGAATTC  1132
      |||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTTCTCTTTATTTCTCCCACACAGAATTC  1130