BAC Information

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BAC

Clone NameB6Ng01-227H07
Chromosome1 (Build37)
Map Location 88,732,392 - 88,836,022
singlet/doubletdoublet
Overlap gene4930429A22Rik, EG620213
Upstream geneCab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc
Downstream geneLOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227H07.bB6Ng01-227H07.g
ACCGA041121GA041122
length1,1131,188
definitionB6Ng01-227H07.b B6Ng01-227H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,835,043 - 88,836,022)(88,732,392 - 88,733,581)
sequence
gaattcagtaagcctgttggtatcaccaagacatgacacatgagttaaaa
aatggaaatgaaacaagggaagactatataaattccaaagagacatttag
tttaggataaaagtaaaggagccttatagatcaggatataagcctacaag
caaccatgaaattatagataaagacagaaaaatgaagaagtcaagtaaaa
aaaaaaacaaaaaaacaaaaacagcagcaaaaagaagagcaatactataa
gactgcctagtgaggtcagcaacactgaacagttttaaagttcataatac
ttgagatgtacacatgcccaaggaatactgccctgggaaacgagaaaaaa
aagggagtaaatcagaagtaattgtatttattgttgttagaaacaggcta
atgtgatcaagtagaaataattcattctgccaggagaaaaaaatatctgc
agaattttagcttgcttgtgtatgtgggtatgtgcgtatgtatgtgtgca
tgtgtgaatgtgtgtaagtgtgtgtaccagtgcgtgttggagggggtaag
cagaggactagccttgcagggctttggtaggaggacttggtccataggca
caagcagattttctaagaaaagtggcatgcttggtccataggcacaaaca
gattttctaagaaaagtggcatgctctggttgtaagtacagcgagagaaa
gataatgggcagaggtcagagagagatggctactgaaaaggcccagcaac
agtcctgagaagaaaaggtggcccatatgattccagggtttgtttgttta
tttattcactttacatcccaaatattagtccttcctctcctcccagtatc
cccccccccctttccaccttgcccttctcttttgagggagaaatcccccc
tatggggtgtcaacacccccaacaaaactcctacctccccacaattcttc
acagatctgaaagaacattctcaactttcgaaggaaaaacaaaaaaacca
gaatagtttaaaacgatcctgaacaataaaagaacttctggagattacat
cctgacttcaagctatactacaagcataagttataagaacctgcatgatc
ttggtatagaaac
gaattcatttctgtttaaactagctggctcctgttccctcttaataatca
ctttgtggtcccactatttctaggtcataacaaatgcattaaaaagaggg
ctggcctttggggaagcagcatttaatttctttctcttcaaccagcagtg
atctagccttcattatgcctatttaagatgttctatagggtgaatattca
atatactttaaaagacttgtaacagacatggtatcatttggtatctgtgg
gcctgcaaacttcaaatgtggtataattcatctggtttagcttcccatgc
ttgggggacaatccttgtgtacctctctaagatagcttctaacctttttc
attacttgtcttattagtgtactaactagtcttaaaaggcacataaagaa
atgatagtctagttttagtgaacacatttgtggtactgaaatgttgacat
cacagtagaatgagatgactggtccctttaagaaaatctgatgtaaaagc
caatttacacttggaggaatcttccatctgttgaaaaagatgcagaatgg
gtgaattagagacagacagaggtgaaagcacacgagtgtgtatgtcttca
ttttaggtctttggggagccatgaggctaaaagccaattaaagctttagt
agagaggaatttaaaagtcatttctcttgggcaaaggaaagatttagagc
agagagtgctcagagaaaagcaggaaggtgttgaattaatgcagccaact
ccttggaattggaatcactgcaaagcccccatctaagatgaccctgtgaa
ggattcaggttggggccctaaagagactctaggacttaggaacttgagta
tatgtgtgctagtcagcctaaagaggaaaatggctgcatcctgtcatgtt
gggtcctcccttctctaacttcttacccggttttcaaattaatacagttc
agaggaattgatatttcttggggagtttttaaatctcttactgattgggg
tattaacctgccctttcattcacttatttatctcatattattaaggcttt
cttcttacaagtctctgccatgtatttttcatcaagtgctatgctactaa
tttatatccagtggatttctatcctctatcatgagaatgcgacctgtata
tcaatcttgcaagagaatatcaccatatgtttgttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88835043_88836022
seq2: B6Ng01-227H07.b_176_1155 (reverse)

seq1  GTTTCTATACCAAGATCATGCAGGTTCTTATTACTATTGCTCTGTAGTAT  50
      ||||||||||||||||||||||||||||||| |||  |||| ||||||||
seq2  GTTTCTATACCAAGATCATGCAGGTTCTTATAACTTATGCT-TGTAGTAT  49

seq1  AGCTTGAAGTCAGGGATGTTATATCTCCAGAAGTTCTTTTATTGTTCAGG  100
      |||||||||||| ||||||   ||||||||||||||||||||||||||||
seq2  AGCTTGAAGTCA-GGATGT--AATCTCCAGAAGTTCTTTTATTGTTCAGG  96

seq1  ATCGTTTT-AACTATTCTGGGTTTTTTGTTTTTCCTTCG-AAGTTGAGAA  148
      |||||||| ||||||||||| |||||||||||||||||| ||||||||||
seq2  ATCGTTTTAAACTATTCTGGTTTTTTTGTTTTTCCTTCGAAAGTTGAGAA  146

seq1  TTGTTCTTTCAAGATCTGTGAAGAATTGTGGGGAGGTAGGAGTTTTGTTG  198
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  -TGTTCTTTC-AGATCTGTGAAGAATTGTGGGGAGGTAGGAGTTTTGTTG  194

seq1  GGGGTG-TGACA-CCCATAGGGGGGATTTCT-CCTCAAAAGAGAAGGGCA  245
      |||||| ||||| |||||||||||||||||| ||||||||||||||||||
seq2  GGGGTGTTGACACCCCATAGGGGGGATTTCTCCCTCAAAAGAGAAGGGCA  244

seq1  AGGTGGAAA-GGGGGGGGGGATACTGGGAGGAGAGGAAGGACTAATATTT  294
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAAAGGGGGGGGGGGATACTGGGAGGAGAGGAAGGACTAATATTT  294

seq1  GGGATGTAAAGTGAATAAATAAACAAACAAACCCTGGAATCATATTGGCC  344
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGATGTAAAGTGAATAAATAAACAAACAAACCCTGGAATCATATGGGCC  344

seq1  ACCTTTTCTTCTCAGGACTGTTGCTGGGCCTTTTCAGTAGCCATCTCTCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCTTCTCAGGACTGTTGCTGGGCCTTTTCAGTAGCCATCTCTCT  394

seq1  CTGACCTCTGCCCATTATCTTTCTCTCGCTGTACTTACAACCAGAGCATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCTGCCCATTATCTTTCTCTCGCTGTACTTACAACCAGAGCATG  444

seq1  CCACTTTTCTTAGAAAATCTGTTTGTGCCTATGGACCAAGCATGCCACTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTTCTTAGAAAATCTGTTTGTGCCTATGGACCAAGCATGCCACTT  494

seq1  TTCTTAGAAAATCTGCTTGTGCCTATGGACCAAGTCCTCCTACCAAAGCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGAAAATCTGCTTGTGCCTATGGACCAAGTCCTCCTACCAAAGCC  544

seq1  CTGCAAGGCTAGTCCTCTGCTTACCCCCTCCAACACGCACTGGTACACAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGGCTAGTCCTCTGCTTACCCCCTCCAACACGCACTGGTACACAC  594

seq1  ACTTACACACATTCACACATGCACACATACATACGCACATACCCACATAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACACACATTCACACATGCACACATACATACGCACATACCCACATAC  644

seq1  ACAAGCAAGCTAAAATTCTGCAGATATTTTTTTCTCCTGGCAGAATGAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAGCTAAAATTCTGCAGATATTTTTTTCTCCTGGCAGAATGAAT  694

seq1  TATTTCTACTTGATCACATTAGCCTGTTTCTAACAACAATAAATACAATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTACTTGATCACATTAGCCTGTTTCTAACAACAATAAATACAATT  744

seq1  ACTTCTGATTTACTCCCTTTTTTTTCTCGTTTCCCAGGGCAGTATTCCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGATTTACTCCCTTTTTTTTCTCGTTTCCCAGGGCAGTATTCCTT  794

seq1  GGGCATGTGTACATCTCAAGTATTATGAACTTTAAAACTGTTCAGTGTTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGTGTACATCTCAAGTATTATGAACTTTAAAACTGTTCAGTGTTG  844

seq1  CTGACCTCACTAGGCAGTCTTATAGTATTGCTCTTCTTTTTGCTGCTGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCACTAGGCAGTCTTATAGTATTGCTCTTCTTTTTGCTGCTGTT  894

seq1  TTTGTTTTTTTGTTTTTTTTTTTACTTGACTTCTTCATTTTTCTGTCTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTGTTTTTTTTTTTACTTGACTTCTTCATTTTTCTGTCTTT  944

seq1  ATCTATAATTTCATGGTTGCTTGTAGGCTTATATCC  980
      ||||||||||||||||||||||||||||||||||||
seq2  ATCTATAATTTCATGGTTGCTTGTAGGCTTATATCC  980

seq1: chr1_88732392_88733581
seq2: B6Ng01-227H07.g_65_1252

seq1  GAATTCATTTCTGTTTAAACTAGCTGGCTCCTGTTCCCTCTTAATAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTGTTTAAACTAGCTGGCTCCTGTTCCCTCTTAATAATCA  50

seq1  CTTTGTGGTCCCACTATTTCTAGGTCATAACAAATGCATTAAAAAGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGTCCCACTATTTCTAGGTCATAACAAATGCATTAAAAAGAGGG  100

seq1  CTGGCCTTTGGGGAAGCAGCATTTAATTTCTTTCTCTTCAACCAGCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTTGGGGAAGCAGCATTTAATTTCTTTCTCTTCAACCAGCAGTG  150

seq1  ATCTAGCCTTCATTATGCCTATTTAAGATGTTCTATAGGGTGAATATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCCTTCATTATGCCTATTTAAGATGTTCTATAGGGTGAATATTCA  200

seq1  ATATACTTTAAAAGACTTGTAACAGACATGGTATCATTTGGTATCTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTTAAAAGACTTGTAACAGACATGGTATCATTTGGTATCTGTGG  250

seq1  GCCTGCAAACTTCAAATGTGGTATAATTCATCTGGTTTAGCTTCCCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAAACTTCAAATGTGGTATAATTCATCTGGTTTAGCTTCCCATGC  300

seq1  TTGGGGGACAATCCTTGTGTACCTCTCTAAGATAGCTTCTAACCTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGACAATCCTTGTGTACCTCTCTAAGATAGCTTCTAACCTTTTTC  350

seq1  ATTACTTGTCTTATTAGTGTACTAACTAGTCTTAAAAGGCACATAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTGTCTTATTAGTGTACTAACTAGTCTTAAAAGGCACATAAAGAA  400

seq1  ATGATAGTCTAGTTTTAGTGAACACATTTGTGGTACTGAAATGTTGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGTCTAGTTTTAGTGAACACATTTGTGGTACTGAAATGTTGACAT  450

seq1  CACAGTAGAATGAGATGACTGGTCCCTTTAAGAAAATCTGATGTAAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGAATGAGATGACTGGTCCCTTTAAGAAAATCTGATGTAAAAGC  500

seq1  CAATTTACACTTGGAGGAATCTTCCATCTGTTGAAAAAGATGCAGAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTACACTTGGAGGAATCTTCCATCTGTTGAAAAAGATGCAGAATGG  550

seq1  GTGAATTAGAGACAGACAGAGGTGAAAGCACACGAGTGTGTATGTCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTAGAGACAGACAGAGGTGAAAGCACACGAGTGTGTATGTCTTCA  600

seq1  TTTTAGGTCTTTGGGGAGCCATGAGGCTAAAAGCCAATTAAAGCTTTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTCTTTGGGGAGCCATGAGGCTAAAAGCCAATTAAAGCTTTAGT  650

seq1  AGAGAGGAATTTAAAAGTCATTTCTCTTGGGCAAAGGAAAGATTTAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAATTTAAAAGTCATTTCTCTTGGGCAAAGGAAAGATTTAGAGC  700

seq1  AGAGAGTGCTCAGAGAAAAGCAGGAAGGTGTTGAATTAATGCAGCCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGCTCAGAGAAAAGCAGGAAGGTGTTGAATTAATGCAGCCAACT  750

seq1  CCTTGGAATTGGAATCACTGCAAAGCCCCCATCTAAGATGACCCTGTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAATTGGAATCACTGCAAAGCCCCCATCTAAGATGACCCTGTGAA  800

seq1  GGATTCAGGTTGGGGCCCTAAAGAGACTCTAGGACTTAGGAACTTGAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAGGTTGGGGCCCTAAAGAGACTCTAGGACTTAGGAACTTGAGTA  850

seq1  TATGTGTGCTAGTCAGCCTAAAGAGGAAAATGGCTGCATCCTGTCATGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGCTAGTCAGCCTAAAGAGGAAAATGGCTGCATCCTGTCATGTT  900

seq1  GGGTCCTCCCTTCTCTAACTTCTTACCCGGTTTTCAAATTAATACAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTCCCTTCTCTAACTTCTTACCCGGTTTTCAAATTAATACAGTTC  950

seq1  AGAGGAATTGATA-TTCTT-GGGAGTTTTTAAATCTCTTACTGATT-GGG  997
      ||||||||||||| ||||| |||||||||||||||||||||||||| |||
seq2  AGAGGAATTGATATTTCTTGGGGAGTTTTTAAATCTCTTACTGATTGGGG  1000

seq1  TATTAA-CTGCCTTTTCATTCACTTATTTATCTCAATATATTAAGGCTTT  1046
      |||||| ||||| ||||||||||||||||||||||   ||||||||||||
seq2  TATTAACCTGCCCTTTCATTCACTTATTTATCTCATATTATTAAGGCTTT  1050

seq1  C-TCTTACCAGTCTCTGCCCATGTA-TTTTCATCAGGTGGCCTATTGCTA  1094
      | |||||| |||||||| ||||||| ||||||||| |||  ||| |||||
seq2  CTTCTTACAAGTCTCTG-CCATGTATTTTTCATCAAGTG--CTA-TGCTA  1096

seq1  CCTAATTTATATTCCAGTTGATTTTCCTAATCTCTATCAT-AGAATGCAG  1143
       |||||||||| |||||| |||||  |||  ||||||||| |||||||  
seq2  -CTAATTTATA-TCCAGTGGATTT--CTATCCTCTATCATGAGAATGCGA  1142

seq1  ACTGTATATCCATCTTGCAAAGAGAATATCACCATATGTTTGTTCTA  1190
       ||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  CCTGTATATCAATCTTGC-AAGAGAATATCACCATATGTTTGTTCTA  1188