BAC Information

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BAC

Clone NameB6Ng01-227H21
Chromosome1 (Build37)
Map Location 112,832,834 - 112,833,960
singlet/doubletsinglet
Overlap geneCdh19
Upstream geneCdh7, LOC100041429, EG626652
Downstream geneEG666578, Dsel, LOC547247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227H21.bB6Ng01-227H21.g
ACCGA041149GA041150
length1,2191,120
definitionB6Ng01-227H21.b B6Ng01-227H21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacaataaaaagacatagaccattagactggatacttaaacagg
tcccaacattttgctgcatacaggaaatgcacctctgtcaaagacagaca
ctaccttacagtaaaaggttggaaaacaattttccatgcagatggtccca
agaaacaagctggggtagccattctaatatcaaataatttcaactttcaa
ccaaaagttatcaaaaggggtagggatggacacttcatactcatcaaagg
aaaaacctctaagaagaactcacaattctgaacatctatgctccaaacac
aagggcagctacattcataaaagaaactttaataaagcacatagcacaca
ttgcacctcacacaataataggaggagacttcaacaccacactctcatga
aattgacagattatggaatcaaaatctaaacagagacacattgaaactaa
cagaagttatttaccaaatggatttaacagatacctatagaatatttcat
cctatagaaaaagaatacaccttcttcttcacatgggaccatctccaaaa
tgggccatataatcagaaacaaaacaggcctcatcagacacaagaatatt
gacataatcccatacaccctatcagatcaccagtaaaaaaagctggtctt
caataacaacaaaaacaacagaaagcccacatacacatggaagctgaaca
acatcctactcagtgataacttggtcaaagaagaaataaagaaagaaatt
aaagacattttaaattttaattaaaatgaagccacagcatacccacacta
atgggatacagtgaaagcagtgctaagagaaaaactcagctctgagtgcc
tccaaaaagaaactggggagagcatacactaccagcttaacaacacacct
gtaagctctagaactaaaagaagcaaatacacccaagaggcgtagatggc
aggaactaatcaaattcaaggctgaagtcaacccagtagaaacaaaagaa
ctatacaagagtccacaaaccagggctgttttctttgagacaatcaacaa
aatagataaagccttagccagacttaccagagggcacagacccagtattc
caattacaaattcagaaaaataaaggaggcaaaaacaacggagccttgga
gaattcgaaatcatcggaatttttacttagaaaagcatataatttccaca
caaagggtgggaaaacctg
gaattccttatggccaccataattagtgtgcatgtaaaaaattattactc
ttttatattttctgtttggatgcctctgatcattacgggaggataaaaca
ctctctgtgaactgaaacaccacaagctaaagaggttcacttgcagatgc
tgaacttaacagttggttaggaatcattaagtcttccataaaattcttgg
gtgatcataaatgtcaaataaatctacattaacagagtacaaacttcctc
agatcagttaatatctagtgctgacagaatatgttgacgtgtggagaaat
tctattattgattctgctaccaaggtttcttctaatcttcacgttttgtt
ttgttttatagagattaacacttattaacctttcttcaagcatgataatt
tatatgaaattatatatatactatactattttctctgatactgtataatc
atctcatttcaattcaatctgggtcataaaaatgaaagaatttaatacca
atatataattcctaaagagaagtaaactatacttttctctgaaatacctg
gtataatctacatcccatgacattgatataatacatcttccagaaagcaa
tgaggcaacataggccaattctaattacgtatggcatttatttccacaaa
tatattgtattatcatggtaaagattcagtagataaacaaaaagatgtaa
tacttacattcacattaatgtgagaatgtctgttacatgattttaaccat
tcattcagaaacaagtgatgttgcattgtatattatttgttttgataaat
gtgaaaacaatgtagtggtatttaaggatatgttgatgttactcctatta
ttaattattgtgaatgtgcttttgaaaaattaatggataaaatatttttc
cttaaacagtttaatatattagaaccttgctaactttgtcctaagaattt
ttcattaagtaattttacattagactttatttatttccttacaaagatgt
ctatcaatttgtcatcattttgttgtaaatacataagtgttgcttttgag
aaatgggataaaggtaaaatcaataggagtatgaaaaacattggtttaat
ttagaaagatgtggctattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112832834_112833960
seq2: B6Ng01-227H21.g_65_1184 (reverse)

seq1  GAATAGCCAACATCTTTTCCTAAATTAAAACCAAATGGTATTTCATACCT  50
      |||||||| ||||||||  ||||||| |||||||   || ||||||| ||
seq2  GAATAGCC-ACATCTTT--CTAAATT-AAACCAA--TGTTTTTCATA-CT  43

seq1  CCTA-TGGTTTTA-CTTTATTCCATTTCTCAAAAAGCAACAC-TATGTAT  97
      |||| || ||||| |||||| ||||||||| ||||||||||| |||||||
seq2  CCTATTGATTTTACCTTTATCCCATTTCTC-AAAAGCAACACTTATGTAT  92

seq1  TTACAACAAAATGATGACAAATTGATAGACATCTTTGTAAGGAAATAAAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACAAAATGATGACAAATTGATAGACATCTTTGTAAGGAAATAAAT  142

seq1  AAAAGTCTAATGTAAAATTACTTAATGAAAAATTCTTTAGGACAAAGTTA  197
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  -AAAGTCTAATGTAAAATTACTTAATGAAAAATTC-TTAGGACAAAGTTA  190

seq1  GCAAGGTTCTAATATATTAAACTGTTTAAGGAAAAATATTTTATCCATTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTTCTAATATATTAAACTGTTTAAGGAAAAATATTTTATCCATTA  240

seq1  ATTTTTCAAAAGCACATTCACAATAATTAATAATAGGAGTAACATCAACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAAAGCACATTCACAATAATTAATAATAGGAGTAACATCAACA  290

seq1  TATCCTTAAATACCACTACATTGTTTTCACATTTATCAAAACAAATAATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTAAATACCACTACATTGTTTTCACATTTATCAAAACAAATAATA  340

seq1  TACAATGCAACATCACTTGTTTCTGAATGAATGGTTAAAATCATGTAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGCAACATCACTTGTTTCTGAATGAATGGTTAAAATCATGTAACA  390

seq1  GACATTCTCACATTAATGTGAATGTAAGTATTACATCTTTTTGTTTATCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTCACATTAATGTGAATGTAAGTATTACATCTTTTTGTTTATCT  440

seq1  ACTGAATCTTTACCATGATAATACAATATATTTGTGGAAATAAATGCCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCTTTACCATGATAATACAATATATTTGTGGAAATAAATGCCAT  490

seq1  ACGTAATTAGAATTGGCCTATGTTGCCTCATTGCTTTCTGGAAGATGTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAATTAGAATTGGCCTATGTTGCCTCATTGCTTTCTGGAAGATGTAT  540

seq1  TATATCAATGTCATGGGATGTAGATTATACCAGGTATTTCAGAGAAAAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAATGTCATGGGATGTAGATTATACCAGGTATTTCAGAGAAAAGT  590

seq1  ATAGTTTACTTCTCTTTAGGAATTATATATTGGTATTAAATTCTTTCATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTACTTCTCTTTAGGAATTATATATTGGTATTAAATTCTTTCATT  640

seq1  TTTATGACCCAGATTGAATTGAAATGAGATGATTATACAGTATCAGAGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACCCAGATTGAATTGAAATGAGATGATTATACAGTATCAGAGAA  690

seq1  AATAGTATAGTATATATATAATTTCATATAAATTATCATGCTTGAAGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATAGTATATATATAATTTCATATAAATTATCATGCTTGAAGAAA  740

seq1  GGTTAATAAGTGTTAATCTCTATAAAACAAAACAAAACGTGAAGATTAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATAAGTGTTAATCTCTATAAAACAAAACAAAACGTGAAGATTAGA  790

seq1  AGAAACCTTGGTAGCAGAATCAATAATAGAATTTCTCCACACGTCAACAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTTGGTAGCAGAATCAATAATAGAATTTCTCCACACGTCAACAT  840

seq1  ATTCTGTCAGCACTAGATATTAACTGATCTGAGGAAGTTTGTACTCTGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCAGCACTAGATATTAACTGATCTGAGGAAGTTTGTACTCTGTT  890

seq1  AATGTAGATTTATTTGACATTTATGATCACCCAAGAATTTTATGGAAGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGATTTATTTGACATTTATGATCACCCAAGAATTTTATGGAAGAC  940

seq1  TTAATGATTCCTAACCAACTGTTAAGTTCAGCATCTGCAAGTGAACCTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATTCCTAACCAACTGTTAAGTTCAGCATCTGCAAGTGAACCTCT  990

seq1  TTAGCTTGTGGTGTTTCAGTTCACAGAGAGTGTTTTATCCTCCCGTAATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTGTGGTGTTTCAGTTCACAGAGAGTGTTTTATCCTCCCGTAATG  1040

seq1  ATCAGAGGCATCCAAACAGAAAATATAAAAGAGTAATAATTTTTTACATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGCATCCAAACAGAAAATATAAAAGAGTAATAATTTTTTACATG  1090

seq1  CACACTAATTATGGTGGCCATAAGGAATTC  1127
      ||||||||||||||||||||||||||||||
seq2  CACACTAATTATGGTGGCCATAAGGAATTC  1120