BAC Information

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BAC

Clone NameB6Ng01-227I20
Chromosome1 (Build37)
Map Location 173,287,035 - 173,455,732
singlet/doubletdoublet
Overlap genePfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna
Upstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1
Downstream geneCd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227I20.bB6Ng01-227I20.g
ACCGA041195GA041196
length233909
definitionB6Ng01-227I20.b B6Ng01-227I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,287,035 - 173,287,267)(173,454,815 - 173,455,732)
sequence
atgttgatggtagcatgcagcctgttagctatctactgtgccctttatac
tattacaaagttgaagtccaactccttaagtgaggagttgttggctgtgt
gccctttccatgggctctttgatgtggttgagtggggagggaatgggtag
agcagtgtttctcacaatatagtctgtggatcccttagtcagaatttcct
gaagaacttgtttagcagtgttgggcatcagac
gaattcatgaaggaaatgtctaaccagggaacctgagaacagagattcag
agaagttgaaggaaagggaggaagagacaatcacaccactaaggatgggc
gtttatggatcaaatagatcaatgctaccagtggagaggctgctgaggta
caaagagttcactgaatttggctattatagtgtctttagactcattagct
atagcagtcagtcttttgcctctgtgatatatactcaagagaaacaggtt
aaagaagaaagtcttatttagtttcatagatgttagcctagggtgaattg
gttcctctgttgttagatcaagggggagacagaatcatcatacagaaagg
gcatattagaagtgtggcttaccgaatggtgaccaggaaagtgagagcca
gcataaaaggccagagaaaatcatctccaaaaacatgctcctctgtggct
gaggagatagatgacttagcaggtaaaagtccttggggtgaaagtctgga
gaccaaagttcacatctctagtatccatatgtcagcaacacatagtaatt
ccagtgttcgctagggaggaatgagcaacagagacaggagcctctccaga
agctggtagatcagcttcacacagtggtgatgagaaccagctcatgtaag
gtggaaaggcaaggcccaaaatctgaagactgccctctaacgactgcatt
gacataggtacatttgtgtcatgtggatgtgtgtgaaccccaaatcactt
cttttttttttccatttttattaggtatttagctcatttacatttccatg
ctataccaaaagtccccataccatccacccccaactccctacccatctac
tcctctttttgggccctggcgtcccctgtactgagcattaaagttagcgg
tcaatgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173287035_173287267
seq2: B6Ng01-227I20.b_53_285

seq1  ATGTTGATGGTAGCATGCAGCCTGTTAGCTATCTACTGTGCCCTTTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATGGTAGCATGCAGCCTGTTAGCTATCTACTGTGCCCTTTATAC  50

seq1  TATTACAAAGTTGAAGTCCAACTCCTTAAGTGAGGAGTTGTTGGCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAAAGTTGAAGTCCAACTCCTTAAGTGAGGAGTTGTTGGCTGTGT  100

seq1  GCCCTTTCCATGGGCTCTTTGATGTGGTTGAGTGGGGAGGGAATGGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCCATGGGCTCTTTGATGTGGTTGAGTGGGGAGGGAATGGGTAG  150

seq1  AGCAGTGTTTCTCACAATATAGTCTGTGGATCCCTGAGTCAGAATCTCCT  200
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  AGCAGTGTTTCTCACAATATAGTCTGTGGATCCCTTAGTCAGAATTTCCT  200

seq1  GAAGAACTTGTTTAGCAGTGTTGGGCATCAGAC  233
      |||||||||||||||||||||||||||||||||
seq2  GAAGAACTTGTTTAGCAGTGTTGGGCATCAGAC  233

seq1: chr1_173454815_173455732
seq2: B6Ng01-227I20.g_68_976 (reverse)

seq1  GCCCATTGGACACGCAAACTTTATATGCCTCAGTACAGGGGAACGCCAGG  50
      ||||||| ||| ||| ||||||| ||| ||||||||||||| ||||||||
seq2  GCCCATT-GAC-CGCTAACTTTA-ATG-CTCAGTACAGGGG-ACGCCAGG  45

seq1  GCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGG  100
      ||| |||| | ||||| | |||||||||   ||||||||| | ||||| |
seq2  GCCCAAAAAGAGGAGTAGATGGGTAGGGAGTTGGGGGTGGAT-GGTAT-G  93

seq1  GGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAA  150
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  GGGACTTTTGGTATAGCA-TGGAAATGTAAATGAGCTAAATACCTAAT-A  141

seq1  AAAATGGAAAAAAAAAAGAAGTGATTTGGGGTTCACACACATCCACATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAAAAAAAAAAGAAGTGATTTGGGGTTCACACACATCCACATGA  191

seq1  CACAAATGTACCTATGTCAATGCAGTCGTTAGAGGGCAGTCTTCAGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGTACCTATGTCAATGCAGTCGTTAGAGGGCAGTCTTCAGATTT  241

seq1  TGGGCCTTGCCTTTCCACCTTACATGAGCTGGTTCTCATCACCACTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTGCCTTTCCACCTTACATGAGCTGGTTCTCATCACCACTGTGT  291

seq1  GAAGCTGATCTACCAGCTTCTGGAGAGGCTCCTGTCTCTGTTGCTCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGATCTACCAGCTTCTGGAGAGGCTCCTGTCTCTGTTGCTCATTC  341

seq1  CTCCCTAGCGAACACTGGAATTACTATGTGTTGCTGACATATGGATACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAGCGAACACTGGAATTACTATGTGTTGCTGACATATGGATACTA  391

seq1  GAGATGTGAACTTTGGTCTCCAGACTTTCACCCCAAGGACTTTTACCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGAACTTTGGTCTCCAGACTTTCACCCCAAGGACTTTTACCTGC  441

seq1  TAAGTCATCTATCTCCTCAGCCACAGAGGAGCATGTTTTTGGAGATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCATCTATCTCCTCAGCCACAGAGGAGCATGTTTTTGGAGATGATT  491

seq1  TTCTCTGGCCTTTTATGCTGGCTCTCACTTTCCTGGTCACCATTCGGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGCCTTTTATGCTGGCTCTCACTTTCCTGGTCACCATTCGGTAA  541

seq1  GCCACACTTCTAATATGCCCTTTCTGTATGATGATTCTGTCTCCCCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTTCTAATATGCCCTTTCTGTATGATGATTCTGTCTCCCCCTTG  591

seq1  ATCTAACAACAGAGGAACCAATTCACCCTAGGCTAACATCTATGAAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACAACAGAGGAACCAATTCACCCTAGGCTAACATCTATGAAACTA  641

seq1  AATAAGACTTTCTTCTTTAACCTGTTTCTCTTGAGTATATATCACAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACTTTCTTCTTTAACCTGTTTCTCTTGAGTATATATCACAGAGG  691

seq1  CAAAAGACTGACTGCTATAGCTAATGAGTCTAAAGACACTATAATAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACTGACTGCTATAGCTAATGAGTCTAAAGACACTATAATAGCCA  741

seq1  AATTCAGTGAACTCTTTGTACCTCAGCAGCCTCTCCACTGGTAGCATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTGAACTCTTTGTACCTCAGCAGCCTCTCCACTGGTAGCATTGA  791

seq1  TCTATTTGATCCATAAACGCCCATCCTTAGTGGTGTGATTGTCTCTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGATCCATAAACGCCCATCCTTAGTGGTGTGATTGTCTCTTCCT  841

seq1  CCCTTTCCTTCAACTTCTCTGAATCTCTGTTCTCAGGTTCCCTGGTTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCTTCAACTTCTCTGAATCTCTGTTCTCAGGTTCCCTGGTTAGA  891

seq1  CATTTCCTTCATGAATTC  918
      ||||||||||||||||||
seq2  CATTTCCTTCATGAATTC  909