BAC Information

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BAC

Clone NameB6Ng01-227K08
Chromosome1 (Build37)
Map Location 41,202,957 - 41,359,293
singlet/doubletdoublet
Overlap geneLOC100041441
Upstream geneIl1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227K08.bB6Ng01-227K08.g
ACCGA041263GA041264
length1,163886
definitionB6Ng01-227K08.b B6Ng01-227K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,358,165 - 41,359,293)(41,202,957 - 41,203,842)
sequence
gaattcatactcaaagctacaaatctctggggggaaaaaaaaatcacaat
tgtcacaggcaggaaaaggatcatgtttttctttcaaaatgtaaaacatt
gcagttgatatgcgtgttcttgtttctggagatttcccgaaggatcccat
caacaaattcagcgggacctctagagcagaccactctctcacatcaaaat
agccaccaggggaagccaccaggggaagccaccaggggaagccaccaggg
gaagccaccagcactggagtgccttgacagttcctgttcttcctttccac
tcatgctcagattcctttgccagcaggctcattttagattgtggtgtatc
ctcacacagctgtactttctcacagataagaatatgctaaatcaatactg
aacactatccgtgagatctattaacatgactccaagtttaaacatggggc
atctacagaaaagaaagaagacatcttcagcttcaaagatgctaaacaac
aatcctttgactcaaatatatattgcattttatactgtggtaataatatt
ttctatgagctattgcatatttcactaaatgtgttattagtttgttcatt
gctcgaaaaagttccctttcagaaagaaatcattgctaacttggtgtaaa
taaatctagatttatttttatattccacaacaggtctccactattatagt
ttctgctgaaatccatacatactaaggcaaaaagagctaagtaccgtgga
gagaaatgaccaacacttagtaggaaaacacagcctcatgttgcttcaga
gccacaccatcttcttttgaggttgttataatctcagaagcattcgtctg
tcctagtggctcagacagaatttaactagataaaaattcgcagtattctt
aggggtaaagttttttctcatccacgaaccctcattgggaatagagaagt
aaaataatggtcatcaggatgcgaatacctgttaaatacaacatcctatg
aagttgggtaaaatcctaccacctagaaataaagaagggagctttttagg
tggtcaaagggatatttgaaataagggagttttaggcatcacaggtttac
atttaaggaataatggatgaaatgaaatgaggaatgacttgaagaatcta
agaagattggaat
gaattcttcttgtagcggtggatgagagagagagagagagagagagagag
agagagagagagagagaggcagggaacagggacagggacagggaaagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagagatctgcaatgcactctggtcacagcccctagtgtttggttcac
tttttgtctttccagtagatgtctttcgtcaacctgatgctctctgcaaa
tcccaagttctctgttgtcactgtggtcttaaggtgaagacaggaacatg
acagagaacgtgggacacagcagctcatttccttcctcccctttgatctg
caaacttttggggtcaaagagagaaatatatatgcaagaagatgcttgcg
atgggactcagagcccagccctgctgaattactgaggatctcagaaacac
acatggggcaattgaggaatttggaaataacatataaaaatgcaggaaat
attgaaaaggcaacttcaaagacataggattttattataactttcatctt
aggatggggcaggggtaaatggtgctatgtgaaccctcttccagacatgt
tgggtgtggtcagagcattctgtatatcctgttcccacggggacctgctg
ctacattagaattcctgagtatttaaaattattctttacattggtgttga
gtgattggcatgaaaaaagtttcagcatgagccgtacattatgtcaagca
attaggttttgttaattccactactattgatccatgtaacttcagacttc
tcaaaataactctgatggaacaccatggaatattcttgggagttctgaga
attcttttactcaatctctctttggcagtgctttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41358165_41359293
seq2: B6Ng01-227K08.b_47_1209 (reverse)

seq1  AATCCAATACTCTTAGAATCTTCAAGTTCATT-CTC-TATCA-TTCATCA  47
      | ||||||  ||||||| |||||||| ||||| ||| | ||| |||||| 
seq2  ATTCCAATCTTCTTAGATTCTTCAAG-TCATTCCTCATTTCATTTCATCC  49

seq1  AT--ATCCT--AATGTAAA-CTGT-ATGCCTAAAACT-CCTTA-TTCAAA  89
      ||   ||||  |||||||| |||| |||||||||||| ||||| ||||||
seq2  ATTATTCCTTAAATGTAAACCTGTGATGCCTAAAACTCCCTTATTTCAAA  99

seq1  T-TCCC-TTGA-CAC--TAAAAGCTCC--TCTTTA-TTCTAG--TGTA-G  128
      | |||| |||| |||   |||||||||  |||||| ||||||   ||| |
seq2  TATCCCTTTGACCACCTAAAAAGCTCCCTTCTTTATTTCTAGGTGGTAGG  149

seq1  ATTTTA-CCAACTTCATA-GATG-TGTATTTAACA-GTATTCGCATCCCT  174
      |||||| ||||||||||| |||| ||||||||||| |||||||||| |||
seq2  ATTTTACCCAACTTCATAGGATGTTGTATTTAACAGGTATTCGCAT-CCT  198

seq1  GATGACCATTA-TTTAC-TCTCTAATCCCAATGA-GGTTCGT-GATGAG-  219
      ||||||||||| ||||| |||||| ||||||||| ||||||| |||||| 
seq2  GATGACCATTATTTTACTTCTCTATTCCCAATGAGGGTTCGTGGATGAGA  248

seq1  AAAAACTTTACCCCTAAG-ATACTGCG-ATTTTTATCTAG-TAAATTCTG  266
      |||||||||||||||||| |||||||| |||||||||||| |||||||||
seq2  AAAAACTTTACCCCTAAGAATACTGCGAATTTTTATCTAGTTAAATTCTG  298

seq1  TCTGAGCCACTAGGACAGACGAATGCTTCTGAGATTATAACAACCTC-AA  315
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTGAGCCACTAGGACAGACGAATGCTTCTGAGATTATAACAACCTCAAA  348

seq1  AGAAGATGGTGTGGCTCTGAAGCAACATGAGGCTGTG-TTTCCTACTAAG  364
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAGATGGTGTGGCTCTGAAGCAACATGAGGCTGTGTTTTCCTACTAAG  398

seq1  TGTTGGTCATTTCTCTCCACGGTACTTAGCTCTTTTTGCCTTAGTATGTA  414
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTCATTTCTCTCCACGGTACTTAGCTCTTTTTGCCTTAGTATGTA  448

seq1  TGGATTTCAGCAGAAACTATAATAGTGGAGACCTGTTGTGGAATATAAAA  464
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCAGCAGAAACTATAATAGTGGAGACCTGTTGTGGAATATAAAA  498

seq1  ATAAATCTAGATTTATTTACACCAAGTTAGCAATGATTTCTTTCTGAAAG  514
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTAGATTTATTTACACCAAGTTAGCAATGATTTCTTTCTGAAAG  548

seq1  GGAACTTTTTCGAGCAATGAACAAACTAATAACACATTTAGTGAAATATG  564
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTTTTCGAGCAATGAACAAACTAATAACACATTTAGTGAAATATG  598

seq1  CAATAGCTCATAGAAAATATTATTACCACAGTATAAAATGCAATATATAT  614
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCTCATAGAAAATATTATTACCACAGTATAAAATGCAATATATAT  648

seq1  TTGAGTCAAAGGATTGTTGTTTAGCATCTTTGAAGCTGAAGATGTCTTCT  664
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCAAAGGATTGTTGTTTAGCATCTTTGAAGCTGAAGATGTCTTCT  698

seq1  TTCTTTTCTGTAGATGCCCCATGTTTAAACTTGGAGTCATGTTAATAGAT  714
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTGTAGATGCCCCATGTTTAAACTTGGAGTCATGTTAATAGAT  748

seq1  CTCACGGATAGTGTTCAGTATTGATTTAGCATATTCTTATCTGTGAGAAA  764
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGGATAGTGTTCAGTATTGATTTAGCATATTCTTATCTGTGAGAAA  798

seq1  GTACAGCTGTGTGAGGATACACCACAATCTAAAATGAGCCTGCTGGCAAA  814
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCTGTGTGAGGATACACCACAATCTAAAATGAGCCTGCTGGCAAA  848

seq1  GGAATCTGAGCATGAGTGGAAAGGAAGAACAGGAACTGTCAAGGCACTCC  864
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTGAGCATGAGTGGAAAGGAAGAACAGGAACTGTCAAGGCACTCC  898

seq1  AGTGCTGGTGGCTTCCCCTGGTGGCTTCCCCTGGTGGCTTCCCCTGGTGG  914
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGTGGCTTCCCCTGGTGGCTTCCCCTGGTGGCTTCCCCTGGTGG  948

seq1  CTTCCCCTGGTGGCTATTTTGATGTGAGAGAGTGGTCTGCTCTAGAGGTC  964
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTGGTGGCTATTTTGATGTGAGAGAGTGGTCTGCTCTAGAGGTC  998

seq1  CCGCTGAATTTGTTGATGGGATCCTTCGGGAAATCTCCAGAAACAAGAAC  1014
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGAATTTGTTGATGGGATCCTTCGGGAAATCTCCAGAAACAAGAAC  1048

seq1  ACGCATATCAACTGCAATGTTTTACATTTTGAAAGAAAAACATGATCCTT  1064
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATATCAACTGCAATGTTTTACATTTTGAAAGAAAAACATGATCCTT  1098

seq1  TTCCTGCCTGTGACAATTGTGATTTTTTTTTCCCCCCAGAGATTTGTAGC  1114
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCTGTGACAATTGTGATTTTTTTTTCCCCCCAGAGATTTGTAGC  1148

seq1  TTTGAGTATGAATTC  1129
      |||||||||||||||
seq2  TTTGAGTATGAATTC  1163

seq1: chr1_41202957_41203842
seq2: B6Ng01-227K08.g_72_957

seq1  GAATTCTTCTTGTAGCGGTGGATGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTGTAGCGGTGGATGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGGCAGGGAACAGGGACAGGGACAGGGAA--AGA  98
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  AGAGAGAGAGAGAGAGAGGCAGGGAACAGGGACAGGGACAGGGAAAGAGA  100

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  150

seq1  GAGAGAGATCTGCAATGCACTCTGGTCACAGCCCCTAGTGTTTGGTTCAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGATCTGCAATGCACTCTGGTCACAGCCCCTAGTGTTTGGTTCAC  200

seq1  TTTTTGTCTTTCCAGTAGATGTCTTTCGTCAACCTGATGCTCTCTGCAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTTTCCAGTAGATGTCTTTCGTCAACCTGATGCTCTCTGCAAA  250

seq1  TCCCAAGTTCTCTGTTGTCACTGTGGTCTTAAGGTGAAGACAGGAACATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTTCTCTGTTGTCACTGTGGTCTTAAGGTGAAGACAGGAACATG  300

seq1  ACAGAGAACGTGGGACACAGCAGCTCATTTCCTTCCTCCCCTTTGATCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAACGTGGGACACAGCAGCTCATTTCCTTCCTCCCCTTTGATCTG  350

seq1  CAAACTTTTGGGGTCAAAGAGAGAAATATATATGCAAGAAGATGCTTGCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTTGGGGTCAAAGAGAGAAATATATATGCAAGAAGATGCTTGCG  400

seq1  ATGGGACTCAGAGCCCAGCCCTGCTGAATTACTGAGGATCTCAGAAACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACTCAGAGCCCAGCCCTGCTGAATTACTGAGGATCTCAGAAACAC  450

seq1  ACATGGGGCAATTGAGGAATTTGGAAATAACATATAAAAATGCAGGAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGGCAATTGAGGAATTTGGAAATAACATATAAAAATGCAGGAAAT  500

seq1  ATTGAAAAGGCAACTTCAAAGACATAGGATTTTATTATAACTTTCATCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAAGGCAACTTCAAAGACATAGGATTTTATTATAACTTTCATCTT  550

seq1  AGGATGGGGCAGGGGTAAATGGTGCTATGTGAACCCTCTTCCAGACATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGGCAGGGGTAAATGGTGCTATGTGAACCCTCTTCCAGACATGT  600

seq1  TGGGTGTGGTCAGAGCATTCTGTATATCCTGTTCCCACGGGGACCTGCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGGTCAGAGCATTCTGTATATCCTGTTCCCACGGGGACCTGCTG  650

seq1  CTACATTAGAATTCCTGAGTATTTAAAATTATTCTTTACATTGGTGTTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTAGAATTCCTGAGTATTTAAAATTATTCTTTACATTGGTGTTGA  700

seq1  GTGATTGGCATG-AAAAAGTTTCAGCATGAGCCGTACATTATGTCAAGCA  747
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGATTGGCATGAAAAAAGTTTCAGCATGAGCCGTACATTATGTCAAGCA  750

seq1  ATTAGGTTTTGTTAATTCCACTACTATTGATCCATGTAACTTCAGACTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTTTTGTTAATTCCACTACTATTGATCCATGTAACTTCAGACTTC  800

seq1  TCAAAATAACTCTGATGGAACAGCAATGGAATAATTCTT-GGAG-TCTGA  845
      |||||||||||||||||||||| | ||||||| |||||| |||| |||||
seq2  TCAAAATAACTCTGATGGAACA-CCATGGAAT-ATTCTTGGGAGTTCTGA  848

seq1  GAATTTCTTTTACTCGAATCTCTCTTTGGTCAGTGCTTTAT  886
      ||| ||||||||||| ||||||||||||| |||||||||||
seq2  GAA-TTCTTTTACTC-AATCTCTCTTTGG-CAGTGCTTTAT  886