BAC Information

Click to search

BAC

Clone NameB6Ng01-227K23
Chromosome1 (Build37)
Map Location 72,192,671 - 72,325,486
singlet/doubletdoublet
Overlap geneMreg, Pecr
Upstream geneLOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255
Downstream geneTmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227K23.bB6Ng01-227K23.g
ACCGA041293GA041294
length1,1021,096
definitionB6Ng01-227K23.b B6Ng01-227K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,324,705 - 72,325,486)(72,192,671 - 72,193,778)
sequence
gaattcttttttttttttttttttttttttttaatgagtgcagtgcaggt
ctgttctgataaattcttctcattttatatgcgtggcttttgctatcgtt
cttgagagggtgtttgcagttattttgcttttgcgttattccactgtctt
ctgcctggctctgttttgaaagccgtcatccgtccttattgtagatctgg
gcatcatgcattgtttttctctaactgtagtaatttttttttttagattt
atttttacttttcatcctgtatctgtatatatgtgggggatgtgcctgtg
agtgcgagtacccttagatctaggctggagcatcggatccctcagagcta
aagttgcaggtgattgtaagctacctacctagcacgagggctgggaactg
aacctgggtcctttaagagagcagcaagcgctcttaacccttgtgctctc
tctccagccccatctgggtttctattagttggcatctcttggtgtgggtt
attatcttcttgctgctatgcaggtccagggttgagtttgctggttgctg
actgagttgagccttgttatatttatagtcttataaatcagctctccctc
cccacctttgagccacactgggatgcagctcagttacctaaaaaaatagt
ttgatacttccaaagagtgtctcgaaattcagagttcggcctgggagcct
ttcatctctggctaatgccgcttcactgccaaagctacgctgcacctggt
gaaagatttttattttattttatttttattatttatttatttggtggtca
acagattgcctgctcctggtgctggatgctgggttccttccctggctcat
tttgaagggctcttttccagtgttcctgtccgcccatgcaacagatctgc
gctctgccaagctgaagagcaggagccaaaaatgccaggtcttcttgaga
actgaggcttttacgtctctggagagttttcctcctctaaattagaagat
ggctgatggcccacactatgagtaatttggccctgatctacctgacttgg
tgagcattcatcagcaagactttggtcaggagaaaggcccataaggtcca
ta
gaattccccagctgagaatggccatgttgcaggagtttgtttataagggc
aaagctataggccactgtatttttctatgagccattattttccatgaact
acaattcccagaattctaggaagtcacctagtccctgagcaggttaattt
tgagtatccatctgggctctagaatccttactgtggaatctcaaaatcca
gaattatcttggagtaaactattaagatatagacttttaaactcaaagaa
gtttataagtaaaaattcattaattaactagtcataaaatgttaatgtaa
aacagcctaatgtaactatcatggctggagactcactcacacacctccat
tcagctatcacactccttaaacaatgatttagcccagtggatctcagcct
gtgagaccccattgggggctaaaccctttcacaggggttgcctaagacca
ttagagaacacagatatttacattatgattcataacaatagcaaaattgc
agttatgaatagcaacaaaaatatctttatggttggggggctcatcacac
atgaggaactacatccacagcattaggaaggttgagaaccactgtttcag
tcaaatagaaaatgaatctattcttacttacccattttccctcctaattt
cttttaaggtgcaggaaagctgtgagctgggtagattcctctatgttctc
tggtagcatcggtccttgaggatttttatcacaacctgagttaaagtgac
tcagccaacaccaaaggccattgaaagctgtctctgggttcattttgcct
ctgttatgaatgctgctcgtgtgagacagtggataaaagctgacaatcaa
gagggaaaacaaaggccccataaagcagatgttgtaaacaaggaacaggt
gttgatgtttatttatacctgggctgctgcctcgattgacactgttagaa
tctcaatccaaggctttactccatggacaagagataaaggaaacaaagag
aatcactgaagaatcagcagtaaacaagcatatggggtagttcacccaac
taagagacagaatgccaattaaccaggaagaactaccgtttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72324705_72325486
seq2: B6Ng01-227K23.b_371_1143 (reverse)

seq1  TATGG-CCTTGTGGGCCTTTTCTCCTGCCCAAAGGGCCTGGCTGATGGAT  49
      ||||| |||| |||||| ||||||||| |||||  | || ||||||| ||
seq2  TATGGACCTTATGGGCC-TTTCTCCTGACCAAA--GTCTTGCTGATGAAT  47

seq1  TGCCTCAACAAGTTCAGGTAGGATCAGGG-CAAATTACTCAATAGTTGTG  98
         |||| |||| ||||||| |||||||| |||||||||| |||| ||||
seq2  --GCTCACCAAG-TCAGGTA-GATCAGGGCCAAATTACTC-ATAG-TGTG  91

seq1  GGCCAATCAGCCATCTTCTAATTTAGGGGAGGAAAACTCTCCAGAGACGT  148
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGCC-ATCAGCCATCTTCTAATTTAGAGGAGGAAAACTCTCCAGAGACGT  140

seq1  AAAAGCCTCAGTTCTCAAGAAGAACCTGGCATTTTTGGCTCCCTGCTCTT  198
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  AAAAGCCTCAGTTCTCAAGAAG-ACCTGGCATTTTTGGCT-CCTGCTCTT  188

seq1  CAGCTTGGCAGAGCGCAGATCTG-TGCATGGGCGGACAGGAACACTGG-A  246
      ||||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  CAGCTTGGCAGAGCGCAGATCTGTTGCATGGGCGGACAGGAACACTGGAA  238

seq1  AAGAGCCCTTCAAAATGAGCCAGGGAAGGAACCCAGCATCCAGCACCAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCCTTCAAAATGAGCCAGGGAAGGAACCCAGCATCCAGCACCAGG  288

seq1  AGCAGGCAATCTGTTGACCACCAAATAAATAAATAATAAAAATAAAATAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCAATCTGTTGACCACCAAATAAATAAATAATAAAAATAAAATAA  338

seq1  AATAAAAAATCTTTCACCAGGTGCAGCGTAGCTTTGGCAGTGAAGCGGCA  396
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAT-AAAAATCTTTCACCAGGTGCAGCGTAGCTTTGGCAGTGAAGCGGCA  387

seq1  TTAGCCAGAGATGAAAGGCTCCCAGGCCGAACTCTGAATTTCGAGACACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCAGAGATGAAAGGCTCCCAGGCCGAACTCTGAATTTCGAGACACT  437

seq1  CTTTGGAAGTATCAAACTATTTTTTTAGGTAACTGAGCTGCATCCCAGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAAGTATCAAACTATTTTTTTAGGTAACTGAGCTGCATCCCAGTG  487

seq1  TGGCTCAAAGGTGGGGAGGGAGAGCTGATTTATAAGACTATAAATATAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAAAGGTGGGGAGGGAGAGCTGATTTATAAGACTATAAATATAAC  537

seq1  AAGGCTCAACTCAGTCAGCAACCAGCAAACTCAACCCTGGACCTGCATAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCAACTCAGTCAGCAACCAGCAAACTCAACCCTGGACCTGCATAG  587

seq1  CAGCAAGAAGATAATAACCCACACCAAGAGATGCCAACTAATAGAAACCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGAAGATAATAACCCACACCAAGAGATGCCAACTAATAGAAACCC  637

seq1  AGATGGGGCTGGAGAGAGAGCACAAGGGTTAAGAGCGCTTGCTGCTCTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGCTGGAGAGAGAGCACAAGGGTTAAGAGCGCTTGCTGCTCTCT  687

seq1  TAAAGGACCCAGGTTCAGTTCCCAGCCCTCGTGCTAGGTAGGTAGCTTAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGACCCAGGTTCAGTTCCCAGCCCTCGTGCTAGGTAGGTAGCTTAC  737

seq1  AATCACCTGCAACTTTAGCTCTGAGGGATCCGATGC  782
      ||||||||||||||||||||||||||||||||||||
seq2  AATCACCTGCAACTTTAGCTCTGAGGGATCCGATGC  773

seq1: chr1_72192671_72193778
seq2: B6Ng01-227K23.g_67_1162

seq1  GAATTCCCCAGCTGAGAATGGCCATGTTGCAGGAGTTTGTTTATAAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGCTGAGAATGGCCATGTTGCAGGAGTTTGTTTATAAGGGC  50

seq1  AAAGCTATAGGCCACTGTATTTTTCTATGAGCCATTATTTTCCATGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTATAGGCCACTGTATTTTTCTATGAGCCATTATTTTCCATGAACT  100

seq1  ACAATTCCCAGAATTCTAGGAAGTCACCTAGTCCCTGAGCAGGTTAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCCCAGAATTCTAGGAAGTCACCTAGTCCCTGAGCAGGTTAATTT  150

seq1  TGAGTATCCATCTGGGCTCTAGAATCCTTACTGTGGAATCTCAAAATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATCCATCTGGGCTCTAGAATCCTTACTGTGGAATCTCAAAATCCA  200

seq1  GAATTATCTTGGAGTAAACTATTAAGATATAGACTTTTAAACTCAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATCTTGGAGTAAACTATTAAGATATAGACTTTTAAACTCAAAGAA  250

seq1  GTTTATAAGTAAAAATTCATTAATTAACTAGTCATAAAATGTTAATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAAGTAAAAATTCATTAATTAACTAGTCATAAAATGTTAATGTAA  300

seq1  AACAGCCTAATGTAACTATCATGGCTGGAGACTCACTCACACACCTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTAATGTAACTATCATGGCTGGAGACTCACTCACACACCTCCAT  350

seq1  TCAGCTATCACACTCCTTAAACAATGATTTAGCCCAGTGGATCTCAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTATCACACTCCTTAAACAATGATTTAGCCCAGTGGATCTCAGCCT  400

seq1  GTGAGACCCCATTGGGGGCTAAACCCTTTCACAGGGGTTGCCTAAGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACCCCATTGGGGGCTAAACCCTTTCACAGGGGTTGCCTAAGACCA  450

seq1  TTAGAGAACACAGATATTTACATTATGATTCATAACAATAGCAAAATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAACACAGATATTTACATTATGATTCATAACAATAGCAAAATTGC  500

seq1  AGTTATGAATAGCAACAAAAATATCTTTATGGTTGGGGGGCTCATCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAATAGCAACAAAAATATCTTTATGGTTGGGGGGCTCATCACAC  550

seq1  ATGAGGAACTACATCCACAGCATTAGGAAGGTTGAGAACCACTGTTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAACTACATCCACAGCATTAGGAAGGTTGAGAACCACTGTTTCAG  600

seq1  TCAAATAGAAAATGAATCTATTCTTACTTACCCATTTTCCCTCCTAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGAAAATGAATCTATTCTTACTTACCCATTTTCCCTCCTAATTT  650

seq1  CTTTTAAGGTGCAGGAAAGCTGTGAGCTGGGTAGATTCCTCTATGTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGGTGCAGGAAAGCTGTGAGCTGGGTAGATTCCTCTATGTTCTC  700

seq1  TGGTAGCATCGGTCCTTGAGGATTTTTATCACAACCTGAGTTAAAGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCATCGGTCCTTGAGGATTTTTATCACAACCTGAGTTAAAGTGAC  750

seq1  TCAGCCAACACCAAAGGCCATTGAAAGCTGTCTCTGGGTTCATTTTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAACACCAAAGGCCATTGAAAGCTGTCTCTGGGTTCATTTTGCCT  800

seq1  CTGTTATGAATGCTGCTCGTGTGAGACAGTGGATAAAAGCTGACAATCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATGAATGCTGCTCGTGTGAGACAGTGGATAAAAGCTGACAATCAA  850

seq1  GAGGGAAAACAAAGGCCCCATAAAGCAGATGTTGTAAACAAGGAACAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAACAAAGGCCCCATAAAGCAGATGTTGTAAACAAGGAACAGGT  900

seq1  GTTGATGTTTATTTATACCT-GGCTGCTGCCTCGATTGACACTGTTAGAA  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTGATGTTTATTTATACCTGGGCTGCTGCCTCGATTGACACTGTTAGAA  950

seq1  TCTCAATCCAAAGGCTTTACCCCATGGACAAGAGATAAAGGAAACAAAGA  999
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  TCTCAATCC-AAGGCTTTACTCCATGGACAAGAGATAAAGGAAACAAAGA  999

seq1  GAAATCACTGAAGAAATCAAGGCAGTAAACAAGCATATGGGGTAAGGTTC  1049
      | ||||||||||| |||||  |||||||||||||||||||||||  ||||
seq2  G-AATCACTGAAG-AATCA--GCAGTAAACAAGCATATGGGGTA--GTTC  1043

seq1  AACCCAACTAAGAGACAGAAATGCAAATAAAACCAGGAAGAAACTACCCA  1099
       ||||||||||||||||| ||||| |||  |||||||||| |||||||  
seq2  -ACCCAACTAAGAGACAG-AATGCCAAT-TAACCAGGAAG-AACTACC--  1087

seq1  ATTTTTTTT  1108
       ||||||||
seq2  GTTTTTTTT  1096