BAC Information

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BAC

Clone NameB6Ng01-228G11
Chromosome1 (Build37)
Map Location 138,023,325 - 138,177,681
singlet/doubletdoublet
Overlap geneKif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1
Upstream genePtprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s
Downstream gene9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228G11.bB6Ng01-228G11.g
ACCGA041824GA041825
length1,0771,118
definitionB6Ng01-228G11.b B6Ng01-228G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,023,325 - 138,024,407)(138,176,583 - 138,177,681)
sequence
gaattccaccccggcccctcactaatgacacctcatcttcacaaccttgt
tcttgctcactcctgagagtccctctccatctttttttgtaaacctaccc
ctctggccagacagaggtagagtctattggagaaaagatggagaacccgc
aaacaatgtgaaggactgaaatctactttgaggcaagcactgggtggaat
tcttgatgtgcatcctccctccccccattgcaactccatgatggtcctga
gatgaggacgtgctccgtctcgctttgggatgtgggagctgatgctgggc
tcggttacatcaccgacttggggttacacagctcatcatgtggatgtgag
ttctggatgtgagcccagacctccgtgactcagaagatcacaactcagcc
tctggactgcctttcgttatttcactcagaccaaagttttgtcaggacta
taaacgcatgacaggctgatttcagatgtttagccttggggtcttatcat
gctgccaggggcagcacagcaaccgaacttccagtcttgcagctcagccc
ctgctttaccatcctatgcaacttcggacaaatctctttccctcttgggg
cctcagtttcttcattcaaaaataagatggctgaataatgtgacctgggg
ggttctttttgagtctagatgttgatatggagactggtgaccatgagaat
ggccacatcgatactgttagcaggcacagcagagtagaagggtgggtaaa
gttaccatgtttaagaaccatgtacagtcaggtggtggtgctgcatgctt
ttaaccacaggcttcaggaggcagaggcaggtagatctttgagttcaacc
cagcctggtatacagagagactttcagagtagccagggcaaaacagagag
atcctgtttcaaaaaaccaaaacaatcaaacaaaaagaaacatgtacatg
ggtgtgcctatgatcccagttctctggatgctgaaggcagagatcattga
gtttagtggtagcatgtgcttcacagaagaactctgcttagagaaaaaaa
tagaatgaagaagagagagagagagag
gaattcatccttgcactttctacaacaagaaatgcagcgcttgtcccttc
agcaggagatgttaatgcagatgagagagcagcaggcctgggtgatttca
cctccgcaaccctctccacagaagcagatccgcgattttaaacctagaca
ggcaggcctgtcatcagctgctgcaccgttctcttcagactccccacgcc
caactcacccatccccacagtcttccaccaggaagagcgcgtctttttct
gttaaaaatcaaaggactccaaggccaaatgaattaaaaataactccttt
gaaccgaaccttgacacctcctcggtctgtggatagccttcctcggctaa
ggaggttttccccaagtcaggttcccattcagacacggtcatttgtatgc
tttggtgatgatggagagccccaaaaagagcccaaacagaaagaggagat
taaaaaggagccctcagagtgcaaagggactttgggaccttgtgaccata
atcctggggagaaggagattaaacctgttgaatcaacagtgtctgaggtg
ttgtcacagcctatcacagagactgtgtgtgtgacaccaaatgaggacca
actgagccagcccacagagccacctcctaaacctgttttcccacctactg
ctcctaaaaatgtcaatctgattgaagtttctctgtccgatttaaaaccc
cctgaaaaggctgatgtatctgttgagaagttggatggagagagtgataa
ggaacagtttgacgatgaccagaaagtatgctgtggcttcttctttaagg
taatactaatgacattgttttgagcatcttcctaggatgggtcctaggaa
gttttctaagttgatacatttatttcttcagtaacaatatcattgattac
agacagccattagttctgaaatgtgttctaggcaaacccagaccttggac
tacagaagtaacttaagtactggctccttgaaccattatttccagttgtg
acttcaggagcttcacctcttccaccacagtctatgcccatcatgctgta
tttaaatcattattacatggatttccctatctcccgttctccaccttttt
atttggatgccctctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_138023325_138024407
seq2: B6Ng01-228G11.b_43_1119

seq1  GAATTCCACCCCGGCCCCTCACTAATGACACCTCATCTTCACAACCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCCGGCCCCTCACTAATGACACCTCATCTTCACAACCTTGT  50

seq1  TCTTGCTCACTCCTGAGAGTCCCTCTCCATCTTTTTTTGTAAACCTACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTCACTCCTGAGAGTCCCTCTCCATCTTTTTTTGTAAACCTACCC  100

seq1  CTCTGGCCAGACAGAGGTAGAGTCTATTGGAGAAAAGATGGAGAACCCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCAGACAGAGGTAGAGTCTATTGGAGAAAAGATGGAGAACCCGC  150

seq1  AAACAATGTGAAGGACTGAAATCTACTTTGAGGCAAGCACTGGGTGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGTGAAGGACTGAAATCTACTTTGAGGCAAGCACTGGGTGGAAT  200

seq1  TCTTGATGTGCATCCTCCCTCCCCCCATTGCAACTCCATGATGGTCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGTGCATCCTCCCTCCCCCCATTGCAACTCCATGATGGTCCTGA  250

seq1  GATGAGGACGTGCTCCGTCTCGCTTTGGGATGTGGGAGCTGATGCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGACGTGCTCCGTCTCGCTTTGGGATGTGGGAGCTGATGCTGGGC  300

seq1  TCGGTTACATCACCGACTTGGGGTTACACAGCTCATCATGTGGATGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTACATCACCGACTTGGGGTTACACAGCTCATCATGTGGATGTGAG  350

seq1  TTCTGGATGTGAGCCCAGACCTCCGTGACTCAGAAGATCACAACTCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATGTGAGCCCAGACCTCCGTGACTCAGAAGATCACAACTCAGCC  400

seq1  TCTGGACTGCCTTTCGTTATTTCACTCAGACCAAAGTTTTGTCAGGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTGCCTTTCGTTATTTCACTCAGACCAAAGTTTTGTCAGGACTA  450

seq1  TAAACGCATGACAGGCTGATTTCAGATGTTTAGCCTTGGGGTCTTATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGCATGACAGGCTGATTTCAGATGTTTAGCCTTGGGGTCTTATCAT  500

seq1  GCTGCCAGGGGCAGCACAGCAACCGAACTTCCAGTCTTGCAGCTCAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGGGGCAGCACAGCAACCGAACTTCCAGTCTTGCAGCTCAGCCC  550

seq1  CTGCTTTACCATCCTATGCAACTTCGGACAAATCTCTTTCCCTCTTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTACCATCCTATGCAACTTCGGACAAATCTCTTTCCCTCTTGGGG  600

seq1  CCTCAGTTTCTTCATTCAAAAATAAGATGGCTGAATAATGTGACCTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTCTTCATTCAAAAATAAGATGGCTGAATAATGTGACCTGGGG  650

seq1  GGTTCTTTTTGAGTCTAGATGTTGATATGGAGACTGGTGACCATGAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTTTGAGTCTAGATGTTGATATGGAGACTGGTGACCATGAGAAT  700

seq1  GGCCACATCGATACTGTTAGCAGGCACAGCAGAGTAGAAGGGTGGGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACATCGATACTGTTAGCAGGCACAGCAGAGTAGAAGGGTGGGTAAA  750

seq1  GTTACCATGTTTAAGAACCATGTACAGTCAGGTGGTGGTGCTGCATGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCATGTTTAAGAACCATGTACAGTCAGGTGGTGGTGCTGCATGCTT  800

seq1  TTAACCACAGGCTTCAGGAGGCAGAGGCAGGTAGATCTTTGAGTTCAACC  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTAACCACAGGCTTCAGGAGGCAGAGGCAGGTAGATCTTTGAGTTCAA-C  849

seq1  CCAGCCTGGTATACAGAGAGACTTTCAGAGTAGCCAGGGCAAAACAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTATACAGAGAGACTTTCAGAGTAGCCAGGGCAAAACAGAGA  899

seq1  GATCCTGTTTCAAAAAACCAAAACAATCAAACAAAAAGAAACATGTACAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATCCTGTTTCAAAAAACCAAAACAATCAAACAAAAAGAAACATGTAC-A  948

seq1  TGGGTGTGCCTATGATCCCAGTTCTCTGGATGCTG-AGGCAGGAGGATCA  999
      ||||||||||||||||||||||||||||||||||| ||||||   |||||
seq2  TGGGTGTGCCTATGATCCCAGTTCTCTGGATGCTGAAGGCAG--AGATCA  996

seq1  -TGAGTTTTAGTGGTAGCATGTGCTTCACAGAAAGACTCTGCTTTAAGAA  1048
       |||| |||||||||||||||||||||||||||  |||||||||  || |
seq2  TTGAG-TTTAGTGGTAGCATGTGCTTCACAGAAGAACTCTGCTT--AG-A  1042

seq1  GAAAAAAATAGAATGAAGGAGAGAGAGAGAGAGAG  1083
      |||||||||||||||||| ||||||||||||||||
seq2  GAAAAAAATAGAATGAAGAAGAGAGAGAGAGAGAG  1077

seq1: chr1_138176583_138177681
seq2: B6Ng01-228G11.g_68_1185 (reverse)

seq1  AAAAGA--GCATC--AATAAAA--GT-GAGAACGGGAGATAGG--AAACC  41
      ||||||  |||||  |||||||  || ||||||||||||||||  || ||
seq2  AAAAGAGGGCATCCAAATAAAAAGGTGGAGAACGGGAGATAGGGAAATCC  50

seq1  ATGTAAT-ATGATTTAAATACAGGCATGAT-GGCAT-GACTGTGGTGGAA  88
      ||||||| |||||||||||||| ||||||| ||||| |||||||||||||
seq2  ATGTAATAATGATTTAAATACA-GCATGATGGGCATAGACTGTGGTGGAA  99

seq1  GA-GTGCAGCT-CTG-AGTCCACACTGGAA--TATGGTTTCAGGAGCCAG  133
      || ||| |||| ||| ||||   |||||||   ||||||  |||||||||
seq2  GAGGTGAAGCTCCTGAAGTCACAACTGGAAATAATGGTTCAAGGAGCCAG  149

seq1  TACTTA--GTACTTCTGTAGTCCAAGGTCT-GGTTTGCCTAG-ACACATT  179
      ||||||   ||||||||||||||||||||| ||||||||||| |||||||
seq2  TACTTAAGTTACTTCTGTAGTCCAAGGTCTGGGTTTGCCTAGAACACATT  199

seq1  TCAGGACTAATGGCTGTCTTGTAATCAATGATATTGTTACTGAAGAAATA  229
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAGAACTAATGGCTGTC-TGTAATCAATGATATTGTTACTGAAGAAATA  248

seq1  AATGTATCAACTTAGAAAACTTCCTAGGACCCATCCTAGGAAGATGCTCA  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCAACTTAGAAAACTTCCTAGGACCCATCCTAGGAAGATGCTCA  298

seq1  AAACAATGTCATTAGTATTACCTTAAAGAAGAAGCCACAGCATACTTTCT  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGTCATTAGTATTACCTTAAAGAAGAAGCCACAGCATACTTTCT  348

seq1  GGTCATCGTCAAACTGTTCCTTATCACTCTCTCCATCCAACTTCTCAACA  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCGTCAAACTGTTCCTTATCACTCTCTCCATCCAACTTCTCAACA  398

seq1  GATACATCAGCCTTTTCAGGGGGTTTTAAATCGGACAGAGAAACTTCAAT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATCAGCCTTTTCAGGGGGTTTTAAATCGGACAGAGAAACTTCAAT  448

seq1  CAGATTGACATTTTTAGGAGCAGTAGGTGGGAAAACAGGTTTAGGAGGTG  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGACATTTTTAGGAGCAGTAGGTGGGAAAACAGGTTTAGGAGGTG  498

seq1  GCTCTGTGGGCTGGCTCAGTTGGTCCTCATTTGGTGTCACACACACAGTC  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGGGCTGGCTCAGTTGGTCCTCATTTGGTGTCACACACACAGTC  548

seq1  TCTGTGATAGGCTGTGACAACACCTCAGACACTGTTGATTCAACAGGTTT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATAGGCTGTGACAACACCTCAGACACTGTTGATTCAACAGGTTT  598

seq1  AATCTCCTTCTCCCCAGGATTATGGTCACAAGGTCCCAAAGTCCCTTTGC  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCTTCTCCCCAGGATTATGGTCACAAGGTCCCAAAGTCCCTTTGC  648

seq1  ACTCTGAGGGCTCCTTTTTAATCTCCTCTTTCTGTTTGGGCTCTTTTTGG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGGGCTCCTTTTTAATCTCCTCTTTCTGTTTGGGCTCTTTTTGG  698

seq1  GGCTCTCCATCATCACCAAAGCATACAAATGACCGTGTCTGAATGGGAAC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCATCATCACCAAAGCATACAAATGACCGTGTCTGAATGGGAAC  748

seq1  CTGACTTGGGGAAAACCTCCTTAGCCGAGGAAGGCTATCCACAGACCGAG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTGGGGAAAACCTCCTTAGCCGAGGAAGGCTATCCACAGACCGAG  798

seq1  GAGGTGTCAAGGTTCGGTTCAAAGGAGTTATTTTTAATTCATTTGGCCTT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTCAAGGTTCGGTTCAAAGGAGTTATTTTTAATTCATTTGGCCTT  848

seq1  GGAGTCCTTTGATTTTTAACAGAAAAAGACGCGCTCTTCCTGGTGGAAGA  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCTTTGATTTTTAACAGAAAAAGACGCGCTCTTCCTGGTGGAAGA  898

seq1  CTGTGGGGATGGGTGAGTTGGGCGTGGGGAGTCTGAAGAGAACGGTGCAG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGGATGGGTGAGTTGGGCGTGGGGAGTCTGAAGAGAACGGTGCAG  948

seq1  CAGCTGATGACAGGCCTGCCTGTCTAGGTTTAAAATCGCGGATCTGCTTC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGATGACAGGCCTGCCTGTCTAGGTTTAAAATCGCGGATCTGCTTC  998

seq1  TGTGGAGAGGGTTGCGGAGGTGAAATCACCCAGGCCTGCTGCTCTCTCAT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGAGGGTTGCGGAGGTGAAATCACCCAGGCCTGCTGCTCTCTCAT  1048

seq1  CTGCATTAACATCTCCTGCTGAAGGGACAAGCGCTGCATTTCTTGTTGTA  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTAACATCTCCTGCTGAAGGGACAAGCGCTGCATTTCTTGTTGTA  1098

seq1  GAAAGTGCAAGGATGAATTC  1099
      ||||||||||||||||||||
seq2  GAAAGTGCAAGGATGAATTC  1118