BAC Information

Click to search

BAC

Clone NameB6Ng01-228G23
Chromosome1 (Build37)
Map Location 101,483,400 - 101,589,922
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666182
Downstream geneC230078M14Rik, LOC633295, EG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228G23.bB6Ng01-228G23.g
ACCGA041848GA041849
length1,174713
definitionB6Ng01-228G23.b B6Ng01-228G23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,483,400 - 101,484,587)(101,589,210 - 101,589,922)
sequence
gaattcttgctctggcttctctcagtggtggagtataacctataagatga
aataaactgtttgcttgtgtttcttacttagatgatgtaacataggcagg
ggaactggagattccaacattcaagtaacaaagaaattaataggcagaga
aaaacctgcccctcccccaaattgagaacatccacaatgtagactctttt
atacccttttaatggatagcagaaataagtttcataccttgtgagttagt
ctgagatagtctatatcacacagatcatgaaaaaagcagttgctgaatag
aatcataacataggggctgctgttaggccactttaaagcacagcttctta
actctgtctcagtgacaggtgaggtgggacaaggcctgatttcctacata
atggaaccaggattcttggactgacatgaactgtaaaaggccagactata
ctctaacagagtacgttccctttgaaaattctatttctaatcacatgtat
cactggtctaatgtgaaccaggattcttcatcaaatgttccagaagttaa
attcaaactggacacagtgccattatgctgctcagaagatgagtgcaatt
tacagaaaagaaaaaaaaaaatcaagtggaatgtgtgaattccttaccat
acacaaagcagggcacaaagctctggagccaatccttcctaagtccaaat
gtcagtttcccattgaatttttttccctgcattttagatcattacttttc
tgtagcactaattctttttctaatgttttcatttaaaattccacatgggt
gtagactgtatgctgagcatggtctcccacagctcctattttctctttct
tcccatctactgacaccatttgttatctttgtgccccaaggagtttcatt
tctacttttatatatgtatgcatgatctcatgtaatcacataaaatctaa
ctaacacaaatacaaaattcaatatttgtctttctgagattgccttagtt
ttcttaatataacattctccaattattataaatttatttttaaatgcaat
actttagtcttcattatggctaagaaagtttttattgttatgtaacagat
tccatttctttattaatttgtggccaacgtcctacatgattaacataagg
ttaattgcttgaacttaattacta

gaattctttgtccaacaggaacaagcttagaaaagaaaatgcctggacag
ctaccagcaggccagttacataaggagaccttgactcagatagacaaaga
acatcagtacaccagtgtgtgctatatgaagccctgacttagagacacaa
caacatcagaacaaaggagatgaaaatccaggaaatagtaaaagccaggc
acaaaagtaaaattgaggtgtcattccatttcatgaagtctctagaggat
gtagagtgagggagaaatcagagacgaaatgttgtcagcctgagaagaga
ttgggaggttatgctttgttaggggagtttctgcttggaatggaggagag
attctagaaatgcagcatggttttataaggtgttggatagtcttagtacc
acttgacaattctaaaattctaaatggttagattgccagaacggcagagg
ttctaccacctatattcaacaatgaaaagaaggtcacattttaaaaaaaa
gtagtctaaaaagagagtgacctacaatcatttatgtttgcaaataaagg
gaacaaattacacagaaaaaagcatggaacggtgtgttctgtgaagaggg
aacaagaaaggtagtcaaggctcggtgctttctctaattaacaatgccat
aagttgaaagtgcaggagcagaaaagggtgcatgggagagtttggatagt
tatggggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_101483400_101484587
seq2: B6Ng01-228G23.b_48_1221

seq1  GAATTCTTGCTCTGGCTTCTCTCAGTGGTGGAGTATAACCTATAAGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTCTGGCTTCTCTCAGTGGTGGAGTATAACCTATAAGATGA  50

seq1  AATAAACTGTTTGCTTGTGTTTCTTACTTAGATGATGTAACATAGGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTGTTTGCTTGTGTTTCTTACTTAGATGATGTAACATAGGCAGG  100

seq1  GGAACTGGAGATTCCAACATTCAAGTAACAAAGAAATTAATAGGCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGAGATTCCAACATTCAAGTAACAAAGAAATTAATAGGCAGAGA  150

seq1  AAAACCTGCCCCTCCCCCAAATTGAGAACATCCACAATGTAGACTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGCCCCTCCCCCAAATTGAGAACATCCACAATGTAGACTCTTTT  200

seq1  ATACCCTTTTAATGGATAGCAGAAATAAGTTTCATACCTTGTGAGTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTTTTAATGGATAGCAGAAATAAGTTTCATACCTTGTGAGTTAGT  250

seq1  CTGAGATAGTCTATATCACACAGATCATGAAAAAAGCAGTTGCTGAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATAGTCTATATCACACAGATCATGAAAAAAGCAGTTGCTGAATAG  300

seq1  AATCATAACATAGGGGCTGCTGTTAGGCCACTTTAAAGCACAGCTTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAACATAGGGGCTGCTGTTAGGCCACTTTAAAGCACAGCTTCTTA  350

seq1  ACTCTGTCTCAGTGACAGGTGAGGTGGGACAAGGCCTGATTTCCTACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCTCAGTGACAGGTGAGGTGGGACAAGGCCTGATTTCCTACATA  400

seq1  ATGGAACCAGGATTCTTGGACTGACATGAACTGTAAAAGGCCAGACTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACCAGGATTCTTGGACTGACATGAACTGTAAAAGGCCAGACTATA  450

seq1  CTCTAACAGAGTACGTTCCCTTTGAAAATTCTATTTCTAATCACATGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACAGAGTACGTTCCCTTTGAAAATTCTATTTCTAATCACATGTAT  500

seq1  CACTGGTCTAATGTGAACCAGGATTCTTCATCAAATGTTCCAGAAGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTCTAATGTGAACCAGGATTCTTCATCAAATGTTCCAGAAGTTAA  550

seq1  ATTCAAACTGGACACAGTGCCATTATGCTGCTCAGAAGATGAGTGCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACTGGACACAGTGCCATTATGCTGCTCAGAAGATGAGTGCAATT  600

seq1  TACAGAAAAGAAAAAAAAAAATCAAGTGGAATGTGTGAATTCCTTACCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAAGAAAAAAAAAAATCAAGTGGAATGTGTGAATTCCTTACCAT  650

seq1  ACACAAAGCAGGGCACAAAGCTCTGGAGCCAATCCTTCCTAAGTCCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGCAGGGCACAAAGCTCTGGAGCCAATCCTTCCTAAGTCCAAAT  700

seq1  GTCAGTTTCCCATTGAATTTTTTTCCCTGCATTTTAGATCATTACTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTCCCATTGAATTTTTTTCCCTGCATTTTAGATCATTACTTTTC  750

seq1  TGTAGCACTAATTCTTTTTCTAATGTTTTCATTTAAAATTCCACATGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCACTAATTCTTTTTCTAATGTTTTCATTTAAAATTCCACATGGGT  800

seq1  GTAGACTGTATGCTGAGCATGGTCTCCCACAGCTCCTATTTTCTCTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTGTATGCTGAGCATGGTCTCCCACAGCTCCTATTTTCTCTTTCT  850

seq1  TCCCATCTACTGACACCATTTGTTATCTTTGTGCCCCAAGGAGTTTCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCTACTGACACCATTTGTTATCTTTGTGCCCCAAGGAGTTTCATT  900

seq1  TCTACTTTTATATATGTATGCATGATCTCATGTAATCACATAAAATCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTTATATATGTATGCATGATCTCATGTAATCACATAAAATCTAA  950

seq1  CTAACACAAATACAAAATTCAATATTTGTCTTTCTGAGATTGCCTTAGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACAAATACAAAATTCAATATTTGTCTTTCTGAGATTGCCTTAGTT  1000

seq1  TTCTTAATATAACATTCTCCAATTA-TATAAATTTATTTTTAAATGCAAT  1049
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCTTAATATAACATTCTCCAATTATTATAAATTTATTTTTAAATGCAAT  1050

seq1  AACTTTAGTCTTCATTATGGCTAAGAAAG-TTTTATTG-TATGT-ACAGA  1096
       |||||||||||||||||||||||||||| |||||||| ||||| |||||
seq2  -ACTTTAGTCTTCATTATGGCTAAGAAAGTTTTTATTGTTATGTAACAGA  1099

seq1  TCCCATTTTCTTTATTATTTTGTTGCCAAACGT-CTACATTGATTAACAT  1145
      | ||| ||||||||||| ||||| ||| ||||| ||||| ||||||||||
seq2  TTCCA-TTTCTTTATTAATTTGTGGCC-AACGTCCTACA-TGATTAACAT  1146

seq1  AA-GTTAATTGCTTTGAACATAATTACTAATAACTTAATTACTA  1188
      || ||||||||| |||||| |||||||||               
seq2  AAGGTTAATTGC-TTGAACTTAATTACTA---------------  1174


seq1: chr1_101589210_101589922
seq2: B6Ng01-228G23.g_68_780 (reverse)

seq1  TCCCCTCCCCATAACTATCCAAACTCTCCCATGCACCCTTTTCTGCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCCATAACTATCCAAACTCTCCCATGCACCCTTTTCTGCTCCT  50

seq1  GCACTTTCAACTTATGGCATTGTTAATTAGAGAAAGCACCGAGCCTTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTCAACTTATGGCATTGTTAATTAGAGAAAGCACCGAGCCTTGAC  100

seq1  TACCTTTCTTGTTCCCTCTTCACAGAACACACCGTTCCATGCTTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCTTGTTCCCTCTTCACAGAACACACCGTTCCATGCTTTTTTCT  150

seq1  GTGTAATTTGTTCCCTTTATTTGCAAACATAAATGATTGTAGGTCACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTTGTTCCCTTTATTTGCAAACATAAATGATTGTAGGTCACTCT  200

seq1  CTTTTTAGACTACTTTTTTTTAAAATGTGACCTTCTTTTCATTGTTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGACTACTTTTTTTTAAAATGTGACCTTCTTTTCATTGTTGAAT  250

seq1  ATAGGTGGTAGAACCTCTGCCGTTCTGGCAATCTAACCATTTAGAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGGTAGAACCTCTGCCGTTCTGGCAATCTAACCATTTAGAATTTT  300

seq1  AGAATTGTCAAGTGGTACTAAGACTATCCAACACCTTATAAAACCATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGTCAAGTGGTACTAAGACTATCCAACACCTTATAAAACCATGCT  350

seq1  GCATTTCTAGAATCTCTCCTCCATTCCAAGCAGAAACTCCCCTAACAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTAGAATCTCTCCTCCATTCCAAGCAGAAACTCCCCTAACAAAG  400

seq1  CATAACCTCCCAATCTCTTCTCAGGCTGACAACATTTCGTCTCTGATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCTCCCAATCTCTTCTCAGGCTGACAACATTTCGTCTCTGATTTC  450

seq1  TCCCTCACTCTACATCCTCTAGAGACTTCATGAAATGGAATGACACCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCACTCTACATCCTCTAGAGACTTCATGAAATGGAATGACACCTCA  500

seq1  ATTTTACTTTTGTGCCTGGCTTTTACTATTTCCTGGATTTTCATCTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTTTTGTGCCTGGCTTTTACTATTTCCTGGATTTTCATCTCCTT  550

seq1  TGTTCTGATGTTGTTGTGTCTCTAAGTCAGGGCTTCATATAGCACACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGATGTTGTTGTGTCTCTAAGTCAGGGCTTCATATAGCACACACT  600

seq1  GGTGTACTGATGTTCTTTGTCTATCTGAGTCAAGGTCTCCTTATGTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTACTGATGTTCTTTGTCTATCTGAGTCAAGGTCTCCTTATGTAACT  650

seq1  GGCCTGCTGGTAGCTGTCCAGGCATTTTCTTTTCTAAGCTTGTTCCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCTGGTAGCTGTCCAGGCATTTTCTTTTCTAAGCTTGTTCCTGTT  700

seq1  GGACAAAGAATTC  713
      |||||||||||||
seq2  GGACAAAGAATTC  713


| Home | SequenceCutter | Blast | Download |