BAC Information

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BAC

Clone NameB6Ng01-229J20
Chromosome1 (Build37)
Map Location 47,357,750 - 47,538,961
singlet/doubletdoublet
Overlap geneEG227061
Upstream geneDnahc7b, LOC666855, Slc39a10
Downstream geneLOC666869, LOC546734, LOC674566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229J20.bB6Ng01-229J20.g
ACCGA042707GA042708
length1,137811
definitionB6Ng01-229J20.b B6Ng01-229J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,357,750 - 47,358,874)(47,538,154 - 47,538,961)
sequence
gaattcacaaatataaaagtcccttttccacccaaatatttaagtggttt
tcatgatgacaaatcatcaaataattttttgagaaacaacatctgagtca
gtgtctgtgcaaatgttagcaaatgacatttgaatcagcagtgtttatta
actatctgctactcgactgacatgatattgcatatgtgaaaaattaaaaa
caaatgaataagataaataagaataaaatgtcataaagtttcccttaaga
actttggtattttgattttccaaacagtgcatttcaaaatcatattcaag
tttttatcatttttctacaaaacctgacatagtatttgacacacattttg
tgtctggatctgtatgtattcttatgtatgtattctgggctggcctcaaa
ttcattatgtagttgaagatggccttgaatttctgaccattttgcctgta
cctcctgattcctgggatgatatttatgtaccctcatgtctggcttacat
tcattcaatcacatgatgctgtgattgaatgaaggtctctgtgcatgcta
gacatgcctttaggaactcaacaacatttccagctgatatgaaacatttt
tagaatttggactaatagaagggaacattactgtaatcattcctaaaata
ttacttttggttctgcttagtaagataccaaagactttttgaaaagagtt
taatgggggaagttctgttgctacttctgtgtcacctctgcttttccaaa
gctcatgttgtctcctatctacacacgtccctattgatgatcttcctata
cttcagtacgtgttgcattagcaaaatcaagtggtaggcatcactgagat
gtttggatcgtgtaattacctttttcagaagtcatatgtgttaaggagtt
atctctctcaattatgatgcctggccagaaaaaagtgaatgctgtagttg
ctcaacaaaactatttaaaaattatgatatgcttatgaatacaaactgct
tcatgacagcatattcagtatcctgacatttgtttgcgtatcaataaaat
gtataataaaatatggatcaacttaagcttttaaaaatataaatcataag
aaacccaaaccagaaccttgttaagcaatttaaaata
gaattcatcactattcagcaatgtttgtaaattatcattaataaatattc
atagtatgtaacctggagaacattacagtgaatgcatttgtaaaagttcc
aggaaaccagaaggaatcttaaagcgttcatctctgaagtatttatcata
ataatctgtgcatttggaaaatgtcccttcatttcccattgcagtgatga
tgctggattttctgaggctccttctttatatgcctaaaaaaaatggcctc
attaaaaaaaaaaaaaaacaacaacaacaacaaaaacaaaataaacaaaa
aaacagctcccatgtggttcagtatcaggggcagttcactaagcaagtgt
cagaatgtttgtgtactaacaaatcctactcagaaaaaaacaaacaaaca
aacaaatatgtgagtagagaggtggagagagaaatttgggggttgatcag
aaagattacatacagaaattgagaatttacaatggtaaacatctaggcat
agatgatccaagtgtgtaacaatacaacatagcagaatttcaaataagaa
aagaatctccatcatgtagataatttgaaggattttgtaggaagaaagga
ctaacaggattgtagaagacacagatctgataatgaaaattttccttaga
gatttctgaaacaatatcagggtccactatgaaaatgatctctatagatt
gatagagaataccctgttttatttgacaaaaaggccacacgaactccaac
caaggtcatgcctcctaattcctctaaattagtgaccactccctataacc
aattattcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_47357750_47358874
seq2: B6Ng01-229J20.b_45_1181

seq1  GAATTCACAAATATAAAAGTCCCTTTTCCACCCAAATATTTAAGTGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAATATAAAAGTCCCTTTTCCACCCAAATATTTAAGTGGTTT  50

seq1  TCATGATGACAAATCATCAAATAATTTTTTGAGAAACAACATCTGAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGACAAATCATCAAATAATTTTTTGAGAAACAACATCTGAGTCA  100

seq1  GTGTCTGTGCAAATGTTAGCAAATGACATTTGAATCAGCAGTGTTTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGCAAATGTTAGCAAATGACATTTGAATCAGCAGTGTTTATTA  150

seq1  ACTATCTGCTACTCGACTGACATGATATTGCATATGTGAAAAATTAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTGCTACTCGACTGACATGATATTGCATATGTGAAAAATTAAAAA  200

seq1  CAAATGAATAAGATAAATAAGAATAAAATGTCATAAAGTTTCCCTTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAATAAGATAAATAAGAATAAAATGTCATAAAGTTTCCCTTAAGA  250

seq1  ACTTTGGTATTTTGATTTTCCAAACAGTGCATTTCAAAATCATATTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGTATTTTGATTTTCCAAACAGTGCATTTCAAAATCATATTCAAG  300

seq1  TTTTTATCATTTTTCTACAAAACCTGACATAGTATTTGACACACATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCATTTTTCTACAAAACCTGACATAGTATTTGACACACATTTTG  350

seq1  TGTCTGGATCTGTATGTATTCTTATGTATGTATTCTGGGCTGGCCTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGATCTGTATGTATTCTTATGTATGTATTCTGGGCTGGCCTCAAA  400

seq1  TTCATTATGTAGTTGAAGATGGCCTTGAATTTCTGACCATTTTGCCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATGTAGTTGAAGATGGCCTTGAATTTCTGACCATTTTGCCTGTA  450

seq1  CCTCCTGATTCCTGGGATGATATTTATGTACCCTCATGTCTGGCTTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGATTCCTGGGATGATATTTATGTACCCTCATGTCTGGCTTACAT  500

seq1  TCATTCAATCACATGATGCTGTGATTGAATGAAGGTCTCTGTGCATGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAATCACATGATGCTGTGATTGAATGAAGGTCTCTGTGCATGCTA  550

seq1  GACATGCCTTTAGGAACTCAACAACATTTCCAGCTGATATGAAACATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCCTTTAGGAACTCAACAACATTTCCAGCTGATATGAAACATTTT  600

seq1  TAGAATTTGGACTAATAGAAGGGAACATTACTGTAATCATTCCTAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTGGACTAATAGAAGGGAACATTACTGTAATCATTCCTAAAATA  650

seq1  TTACTTTTGGTTCTGCTTAGTAAGATACCAAAGACTTTTTGAAAAGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTGGTTCTGCTTAGTAAGATACCAAAGACTTTTTGAAAAGAGTT  700

seq1  TAATGGGGGAAGTTCTGTTGCTACTTCTGTGTCACCTCTGCTTTTCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGGGAAGTTCTGTTGCTACTTCTGTGTCACCTCTGCTTTTCCAAA  750

seq1  GCTCATGTTGTCTCCTATCTACACACGTCCCTATTGATGATCTTCCTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGTTGTCTCCTATCTACACACGTCCCTATTGATGATCTTCCTATA  800

seq1  CTTCAGTACGTGTTGCATTAGCAAAATCAAGTGGTAGGCATCACTGAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTACGTGTTGCATTAGCAAAATCAAGTGGTAGGCATCACTGAGAT  850

seq1  GTTTGGATCGTGTAATTACCTTTTTCAGAAGTTCATATGTGTT-AGGAGT  899
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  GTTTGGATCGTGTAATTACCTTTTTCAGAAG-TCATATGTGTTAAGGAGT  899

seq1  TATCTCTCTCAATTATGATGCCTGGCCAGAAAAAAGTGAATGCTGTAGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCTCAATTATGATGCCTGGCCAGAAAAAAGTGAATGCTGTAGTT  949

seq1  GCTCAACAAAACTATTTAAAAATTATGATAATGCTTATG-ATACAAACTG  998
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  GCTCAACAAAACTATTTAAAAATTATGAT-ATGCTTATGAATACAAACTG  998

seq1  CTTCATGACAGCATATTCAGTATCTTGACATTTGTTTGCGTATC-ATAAA  1047
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  CTTCATGACAGCATATTCAGTATCCTGACATTTGTTTGCGTATCAATAAA  1048

seq1  ATGTAT-ATAAAATAT-GATCAACTTAAGCTTT--AAAATAT-AATCATA  1092
      |||||| ||||||||| ||||||||||||||||  ||||||| |||||||
seq2  ATGTATAATAAAATATGGATCAACTTAAGCTTTTAAAAATATAAATCATA  1098

seq1  AGAAACCCAAA-CAGA--CTTGTT-AGCAATT--AAATA  1125
      ||||||||||| ||||  |||||| |||||||  |||||
seq2  AGAAACCCAAACCAGAACCTTGTTAAGCAATTTAAAATA  1137

seq1: chr1_47538154_47538961
seq2: B6Ng01-229J20.g_66_875 (reverse)

seq1  TTGAATATTTGGTTATAGGGAGT-GTCACTAATTTAGAGGAATTAGGAGG  49
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGAATAATTGGTTATAGGGAGTGGTCACTAATTTAGAGGAATTAGGAGG  50

seq1  CATGACCTT-GTTGGAGTTCGTGTGGCCTTTTTGTCAAATAAAACAGGGT  98
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTTGGTTGGAGTTCGTGTGGCCTTTTTGTCAAATAAAACAGGGT  100

seq1  ATTCTCTATCAATCTCTAGAGTTCATTTTCATAGTGGACCCTGATATTGT  148
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  ATTCTCTATCAATCTATAGAGATCATTTTCATAGTGGACCCTGATATTGT  150

seq1  TTCAGAAATCTCTAAGGAAAATTTTCATTATCAGATCTGTGTCTTCTACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAATCTCTAAGGAAAATTTTCATTATCAGATCTGTGTCTTCTACA  200

seq1  ATCCTGTTAGTCCTTTCTTCCTACAAAATCCTTCAAATTATCTACATGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTAGTCCTTTCTTCCTACAAAATCCTTCAAATTATCTACATGAT  250

seq1  GGAGATTCTTTTCTTATTTGAAATTCTGCTATGTTGTATTGTTACACACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTCTTTTCTTATTTGAAATTCTGCTATGTTGTATTGTTACACACT  300

seq1  TGGATCATCTATGCCTAGATGTTTACCATTGTAAATTCTCAATTTCTGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCATCTATGCCTAGATGTTTACCATTGTAAATTCTCAATTTCTGTA  350

seq1  TGTAATCTTTCTGATCAACCCCCAAATTTCTCTCTCCACCTCTCTACTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCTTTCTGATCAACCCCCAAATTTCTCTCTCCACCTCTCTACTCA  400

seq1  CATATTTGTTTGTTTGTTTGTTTTTTTCTGAGTAGGATTTGTTAGTACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGTTTGTTTGTTTGTTTTTTTCTGAGTAGGATTTGTTAGTACAC  450

seq1  AAACATTCTGACACTTGCTTAGTGAACTGCCCCTGATACTGAACCACATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCTGACACTTGCTTAGTGAACTGCCCCTGATACTGAACCACATG  500

seq1  GGAGCTGTTTTTTTGTTTATTTTGTTTTTGTTGTTGTTGTTGTTTTTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGTTTTTTTGTTTATTTTGTTTTTGTTGTTGTTGTTGTTTTTTTT  550

seq1  TTTTTTTAATGAGGCCATTTTTTTTAGGCATATAAAGAAGGAGCCTCAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATGAGGCCATTTTTTTTAGGCATATAAAGAAGGAGCCTCAGA  600

seq1  AAATCCAGCATCATCACTGCAATGGGAAATGAAGGGACATTTTCCAAATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGCATCATCACTGCAATGGGAAATGAAGGGACATTTTCCAAATG  650

seq1  CACAGATTATTATGATAAATACTTCAGAGATGAACGCTTTAAGATTCCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTATTATGATAAATACTTCAGAGATGAACGCTTTAAGATTCCTT  700

seq1  CTGGTTTCCTGGAACTTTTACAAATGCATTCACTGTAATGTTCTCCAGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCCTGGAACTTTTACAAATGCATTCACTGTAATGTTCTCCAGGT  750

seq1  TACATACTATGAATATTTATTAATGATAATTTACAAACATTGCTGAATAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACTATGAATATTTATTAATGATAATTTACAAACATTGCTGAATAG  800

seq1  TGATGAATTC  808
      ||||||||||
seq2  TGATGAATTC  810