BAC Information

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BAC

Clone NameB6Ng01-229P05
Chromosome1 (Build37)
Map Location 47,874,364 - 47,982,885
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc39a10, EG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229P05.bB6Ng01-229P05.g
ACCGA042943GA042944
length1,211473
definitionB6Ng01-229P05.b B6Ng01-229P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,874,364 - 47,875,563)(47,982,403 - 47,982,885)
sequence
gaattccataaagaatatttttgatagtcattcttcttcttggttccatc
ttggacattacttgtgcccaggcattccatagaacagcacatgatctata
tttcatgtgatcttttctctattttctctcaaagatgaaatttcttgtga
caaaagagaagaaagaaatattcttagacctctatcttaatgtttgtatt
gtctcattagagaaatgccatgtttagtcattgtaatacaccatttaaca
tttcaaaacaccaatgtttagagaaaatgtacgttcattttacaaagaga
catcaattttgcgactattttagtgtgttttaatgatgtcttagtttgca
aaaatgttcttgtttagccaataaattaaatctttactatatccacagaa
aacaaactgtaacagaaatacctttggaaagaaaagcagcaaaattgatg
gttgaattccaggtataattttcagtgaactataaaatatgttttaaaag
tgacaactatttttgtgaaattataatgaaaaacctacatttctcaaagg
gcctattgttctggagatgccctcttatctctgataaagaaaagttgaac
ctcgttcaagggaactgaagataaggtctcacagtgctattctctatggt
aagggtctgtttggtttggaatttgtggacactgtatcaccttccaaatc
taaatgaagtcattattgaagactattaaaatacaattatttccatttat
ggcttaagaaacagttggctgtattaattaggaaacttcaatctatgcat
gtcaatcagccagaatattgaaagaatgaaatagaaatagttgaatgtta
gaaagtcttaatcatactatttttaaaaggttttttgaataatcgtttat
cattattcaacaaacatgatcaaaggacatgacaggaaatttcctgacag
aagtcatgcagatgggttagttaacttacagaaataatttagtggtttgt
aataattcaaactttttaaaaatgcaaatagatgaacatttcatttttgg
tattactaccaaaacatttataaaaattatagttttgtttgggtaatcaa
taattccttacatagtcataagagaaagccagagattcatattggtagga
tatgaaatttgctactaaataagtctgcttctatcaatctataccttacg
gagaggtttat

aaataatttaatgcttagagctgatgtccacaaataatactgtgtagttc
aaaaatttatatctgagttaaaatctggcagtgtacatactccaaaacag
gaggaatctagtcagaaaagccaatagtttttttaatgattaatttgttg
tagtaatgtttattttttttaagtacagtcacattatattgaatagttat
atacaaatgaacatatagaaaacactctaaggtctacatttccacaagta
aatattgaataaaacccttgatcatcttgcctgtgtgtggaaagctgaca
gtgtgtataggaatcaggtggtagactggagaagggtggggcacaaagtg
gcacagggcaagttattgtttcttaacagagaaataaactttataaagag
actttggatacagtatacaacacatacactcaatatatatatatatatat
gtgtgtgtgtgtgggggtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_47874364_47875563
seq2: B6Ng01-229P05.b_48_1258

seq1  GAATTCCATAAAGAATATTTTTGATAGTCATTCTTCTTCTTGGTTCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAGAATATTTTTGATAGTCATTCTTCTTCTTGGTTCCATC  50

seq1  TTGGACATTACTTGTGCCCAGGCATTCCATAGAACAGCACATGATCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATTACTTGTGCCCAGGCATTCCATAGAACAGCACATGATCTATA  100

seq1  TTTCATGTGATCTTTTCTCTATTTTCTCTCAAAGATGAAATTTCTTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTGATCTTTTCTCTATTTTCTCTCAAAGATGAAATTTCTTGTGA  150

seq1  CAAAAGAGAAGAAAGAAATATTCTTAGACCTCTATCTTAATGTTTGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGAAGAAAGAAATATTCTTAGACCTCTATCTTAATGTTTGTATT  200

seq1  GTCTCATTAGAGAAATGCCATGTTTAGTCATTGTAATACACCATTTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATTAGAGAAATGCCATGTTTAGTCATTGTAATACACCATTTAACA  250

seq1  TTTCAAAACACCAATGTTTAGAGAAAATGTACGTTCATTTTACAAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAACACCAATGTTTAGAGAAAATGTACGTTCATTTTACAAAGAGA  300

seq1  CATCAATTTTGCGACTATTTTAGTGTGTTTTAATGATGTCTTAGTTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTTTGCGACTATTTTAGTGTGTTTTAATGATGTCTTAGTTTGCA  350

seq1  AAAATGTTCTTGTTTAGCCAATAAATTAAATCTTTACTATATCCACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTCTTGTTTAGCCAATAAATTAAATCTTTACTATATCCACAGAA  400

seq1  AACAAACTGTAACAGAAATACCTTTGGAAAGAAAAGCAGCAAAATTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTGTAACAGAAATACCTTTGGAAAGAAAAGCAGCAAAATTGATG  450

seq1  GTTGAATTCCAGGTATAATTTTCAGTGAACTATAAAATATGTTTTAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTCCAGGTATAATTTTCAGTGAACTATAAAATATGTTTTAAAAG  500

seq1  TGACAACTATTTTTGTGAAATTATAATGAAAAACCTACATTTCTCAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTATTTTTGTGAAATTATAATGAAAAACCTACATTTCTCAAAGG  550

seq1  GCCTATTGTTCTGGAGATGCCCTCTTATCTCTGATAAAGAAAAGTTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTGTTCTGGAGATGCCCTCTTATCTCTGATAAAGAAAAGTTGAAC  600

seq1  CTCGTTCAAGGGAACTGAAGATAAGGTCTCACAGTGCTATTCTCTATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTCAAGGGAACTGAAGATAAGGTCTCACAGTGCTATTCTCTATGGT  650

seq1  AAGGGTCTGTTTGGTTTGGAATTTGTGGACACTGTATCACCTTCCAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCTGTTTGGTTTGGAATTTGTGGACACTGTATCACCTTCCAAATC  700

seq1  TAAATGAAGTCATTATTGAAGACTATTAAAATACAATTATTTCCATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAGTCATTATTGAAGACTATTAAAATACAATTATTTCCATTTAT  750

seq1  GGCTTAAGAAACAGTTGGCTGTATTAATTAGGAAACTTCAATCTATGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAGAAACAGTTGGCTGTATTAATTAGGAAACTTCAATCTATGCAT  800

seq1  GTCAATCAGCCAGAATATTGAAAGAATGAAATAGAAATAGTTGAATGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCAGCCAGAATATTGAAAGAATGAAATAGAAATAGTTGAATGTTA  850

seq1  GAAAGTCTTAATCATACTA-TTTTAAAAGGTTTTTTGAATAATCGTTTAT  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAAAGTCTTAATCATACTATTTTTAAAAGGTTTTTTGAATAATCGTTTAT  900

seq1  CATTATTCAACAAACATGATCAAAGGACATGACAAGAAA-TTCCTGACAG  948
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  CATTATTCAACAAACATGATCAAAGGACATGACAGGAAATTTCCTGACAG  950

seq1  AAGTCATGCAGAT-GGTTAG-TAAC-TACAGAAATAA-TTAGTGGTTTTG  994
      ||||||||||||| |||||| |||| ||||||||||| ||||||| ||||
seq2  AAGTCATGCAGATGGGTTAGTTAACTTACAGAAATAATTTAGTGG-TTTG  999

seq1  TAATAATTCAAACTTT---AAAATGCAAATAGATG-ACACTTCATTTT--  1038
      ||||||||||||||||   |||||||||||||||| ||| ||||||||  
seq2  TAATAATTCAAACTTTTTAAAAATGCAAATAGATGAACATTTCATTTTTG  1049

seq1  GTATTACTAACAAAACATTTATAAAAATATTAGTTTTGTTTTGGTTAAAT  1088
      ||||||||| ||||||||||||||||||  ||||||||||| |||  |||
seq2  GTATTACTACCAAAACATTTATAAAAATTATAGTTTTGTTTGGGT--AAT  1097

seq1  CAATAATTTCCCTTACATAATTCAT-AGAGAAAGCCAGAGATTTAATTAT  1137
      ||||||||  |||||||| | |||| ||||||||||||||||| |  |||
seq2  CAATAATT--CCTTACAT-AGTCATAAGAGAAAGCCAGAGATTCA--TAT  1142

seq1  T-GTAG--TATGATATTTGCCTTTCCAAAATAA-TCTGCTTCTATCAATC  1183
      | ||||  ||||| ||||||   | | |||||| ||||||||||||||||
seq2  TGGTAGGATATGAAATTTGC---TACTAAATAAGTCTGCTTCTATCAATC  1189

seq1  TA---CTTAC--AGAGGTTTAT  1200
      ||   |||||  ||||||||||
seq2  TATACCTTACGGAGAGGTTTAT  1211


seq1: chr1_47982403_47982885
seq2: B6Ng01-229P05.g_67_545 (reverse)

seq1  CACACACAGACACACACACACACACACATATATATATATATATATTGAGT  50
          |||| || | ||||||||||||||||||||||||||||||||||||
seq2  ----CACACACCCCCACACACACACACATATATATATATATATATTGAGT  46

seq1  GTATGTGTTGTATACTGTATCCAAAGTCTCTTTATAAAGTTTATTTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTTGTATACTGTATCCAAAGTCTCTTTATAAAGTTTATTTCTCT  96

seq1  GTTAAGAAACAATAACTTGCCCTGTGCCACTTTGTGCCCCACCCTTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAAACAATAACTTGCCCTGTGCCACTTTGTGCCCCACCCTTCTCC  146

seq1  AGTCTACCACCTGATTCCTATACACACTGTCAGCTTTCCACACACAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACCACCTGATTCCTATACACACTGTCAGCTTTCCACACACAGGCA  196

seq1  AGATGATCAAGGGTTTTATTCAATATTTACTTGTGGAAATGTAGACCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATCAAGGGTTTTATTCAATATTTACTTGTGGAAATGTAGACCTTA  246

seq1  GAGTGTTTTCTATATGTTCATTTGTATATAACTATTCAATATAATGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTTCTATATGTTCATTTGTATATAACTATTCAATATAATGTGAC  296

seq1  TGTACTTAAAAAAAATAAACATTACTACAACAAATTAATCATTAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTAAAAAAAATAAACATTACTACAACAAATTAATCATTAAAAAAA  346

seq1  CTATTGGCTTTTCTGACTAGATTCCTCCTGTTTTGGAGTATGTACACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGCTTTTCTGACTAGATTCCTCCTGTTTTGGAGTATGTACACTGC  396

seq1  CAGATTTTAACTCAGATATAAATTTTTGAACTACACAGTATTATTTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTTAACTCAGATATAAATTTTTGAACTACACAGTATTATTTGTGG  446

seq1  ACATCAGCTCTAAGCATTAAATTATTTGAATTC  483
      |||||||||||||||||||||||||||||||||
seq2  ACATCAGCTCTAAGCATTAAATTATTTGAATTC  479


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