BAC Information

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BAC

Clone NameB6Ng01-230A14
Chromosome1 (Build37)
Map Location 23,288,991 - 23,290,068
singlet/doubletsinglet
Overlap geneEG623356
Upstream geneRims1, Rims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4
Downstream geneOgfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230A14.bB6Ng01-230A14.g
ACCGA043008GA043009
length1,1061,081
definitionB6Ng01-230A14.b B6Ng01-230A14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgttcttgtggttgtcttcttttaggtttgttgaaggattactt
tctcgctttttctagggtgtggttttcatccttgtattgatttttttttc
tgttattatcctttgaagggctggatttgtgggaagatattgtgtgaatt
tggttttgtcatggaatactttggtttctccatctatggtaattgagaat
tttgctgggtatagtagcctgggctggcatttgtgttctcttagtgtctg
tataacatctgttcaggctattctggctttcatagtctctggtgagaaat
ctggagtaattctaataggactgcctttatatgttacttgacctttttcc
cttgctgcttttaatattttgtctttatttagtgcatttgttgttctgat
tattatgtgtcgggaggaatttcttttctggtccagtctatttggagttc
tgtaggcttcttgtatgttcatgggcatctctttctttaggtttgggaag
ttttcttctataattttgttgaagatatttgctggcccttttagttaaat
atcttcattctcatctactcctattattggtaggtttggtcttctctttg
tgtcctggatttcctggatgttttgagttaggatctttttgcattttgca
ttttcttttatttttgtgcccatgttccctatggaatcttctgcatatga
gattctctcttccatctcgtattctgttgctgatgtttgcatctatggtt
cctgatttctttccatgggtttctatctccagagttgtctccctttgggt
tttctgtattgcttttatttccctttttagatcctgcatggtttttgttc
acttccatgtcctgtttggtactgttttcctataactccctaaggcatta
ttttgtgttttccttcttgaaaggcttctagctgtttaacctgtgtttcc
ctaaatttcctcctaaagtcctccatcatcatcatgaagagtgactttag
atccatgtctgcttttctggtggatggttgtatccagactttttatcgtg
gggagagtttagtctctgaatgaatggccagataacctagtttcctgtgc
tttgtt
gaattcctttggtgatgaacatcagtatggaagtgtaagctgaataaacc
ctttcctctccaacttgcttcttggtcatgatgtttgtgcaggaatagaa
accctgactaagacaatgtccaattgagaaaacctttattctcaagttta
acttgtcatcttaacataaattgccattttacgcaggaactgttcaggcg
aagtgcagttagtgaggcctggacttttatcacttgagtttctgttagta
tccctccctttagggtacatgtgtgcagcacttagggctttccctgtgtt
aggattctaattaaacttctccacaaggatatcttgagagacttatgcat
tgtataacacatttcctccactaatcatattcaaagggaggaaatagaaa
cacccaaattatttaaatgtccttctaccttctcttatacctttaaaaaa
ttaaggaatggttgctctaaggcaggatttcagatatgtgttcactcatt
tttaaaatacttgtctacctgttacaataaggaggactctgataagggtt
ggtgacacagctgtgaacaaggccagagctgtccctgccatcccttatct
attactgacagacactgagttctgggaaggagtgagtgagacacagttgc
tgaataggtgctgcatagaacagagcttagaaattgtgtctgctgaagta
gggattcctcaagttgttgagagtctaaatctagacagattgggaaactg
gtagaattgggaaagaaagcccaagaaactggaatttggatcagcttgct
ttttaaagcattgattagtaatattaatagatgtctcatgccagtaattc
aggtgaataatagtgatagctctcactttctgggcctatgtgttctaaaa
gtggcagcgtcatgcgaagtaaatccttgaacttagaactgccgtataag
attttaatccttttactaaagggaaaaccctatagagcaatgagtccgtc
ttttactacattgcccaagtctgatgcacttcagaggaggttttcaggag
attgcttatgcagttcctatttggtccactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23288991_23290068
seq2: B6Ng01-230A14.g_67_1147

seq1  GAATTCCTTTGGTGATGAACATCAGTATGGAAGTGTAAGCTGAATAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGGTGATGAACATCAGTATGGAAGTGTAAGCTGAATAAACC  50

seq1  CTTTCCTCTCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCTCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAA  100

seq1  ACCCTGACTAAGACAATGTCCAATTGAGAAAACCTTTATTCTCAAGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGACTAAGACAATGTCCAATTGAGAAAACCTTTATTCTCAAGTTTA  150

seq1  ACTTGTCATCTTAACATAAATTGCCATTTTACGCAGGAACTGTTCAGGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCATCTTAACATAAATTGCCATTTTACGCAGGAACTGTTCAGGCG  200

seq1  AAGTGCAGTTAGTGAGGCCTGGACTTTTATCACTTGAGTTTCTGTTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAGTTAGTGAGGCCTGGACTTTTATCACTTGAGTTTCTGTTAGTA  250

seq1  TCCCTCCCTTTAGGGTACATGTGTGCAGCACTTAGGGCTTTCCCTGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTTTAGGGTACATGTGTGCAGCACTTAGGGCTTTCCCTGTGTT  300

seq1  AGGATTCTAATTAAACTTCTCCACAAGGATATCTTGAGAGACTTATGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCTAATTAAACTTCTCCACAAGGATATCTTGAGAGACTTATGCAT  350

seq1  TGTATAACACATTTCCTCCACTAATCATATTCAAAGGGAGGAAATAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAACACATTTCCTCCACTAATCATATTCAAAGGGAGGAAATAGAAA  400

seq1  CACCCAAATTATTTAAATGTCCTTCTACCTTCTCTTATACCTTTAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAATTATTTAAATGTCCTTCTACCTTCTCTTATACCTTTAAAAAA  450

seq1  TTAAGGAATGGTTGCTCTAAGGCAGGATTTCAGATATGTGTTCACTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAATGGTTGCTCTAAGGCAGGATTTCAGATATGTGTTCACTCATT  500

seq1  TTTAAAATACTTGTCTACCTGTTACAATAAGGAGGACTCTGATAAGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATACTTGTCTACCTGTTACAATAAGGAGGACTCTGATAAGGGTT  550

seq1  GGTGACACAGCTGTGAACAAGGCCAGAGCTGTCCCTGCCATCCCTTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACACAGCTGTGAACAAGGCCAGAGCTGTCCCTGCCATCCCTTATCT  600

seq1  ATTACTGACAGACACTGAGTTCTGGGAAGGAGTGAGTGAGACACAGTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGACAGACACTGAGTTCTGGGAAGGAGTGAGTGAGACACAGTTGC  650

seq1  TGAATAGGTGCTGCATAGAACAGAGCTTAGAAATTGTGTCTGCTGAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGGTGCTGCATAGAACAGAGCTTAGAAATTGTGTCTGCTGAAGTA  700

seq1  GGGATTCCTCAAGTTGTTGAGAGTCTAAATCTAGACAGATTGGGAAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCCTCAAGTTGTTGAGAGTCTAAATCTAGACAGATTGGGAAACTG  750

seq1  GTAGAATTGGGAAAGAAAGCCCAAGAAACTGGAATTTGGATCAGCTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATTGGGAAAGAAAGCCCAAGAAACTGGAATTTGGATCAGCTTGCT  800

seq1  TTTTAAAGCATTGATTAGTAATATTAATAGATGTCTCATGCCAGTAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGCATTGATTAGTAATATTAATAGATGTCTCATGCCAGTAATTC  850

seq1  AGGTGAATAATAGTGATAGCTCTCACTTTCT-GGCCTATGTGTTCTAAAA  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGTGAATAATAGTGATAGCTCTCACTTTCTGGGCCTATGTGTTCTAAAA  900

seq1  GTGGCAGCGTCATGCGAAGTAAATCCTTGAACTTAGAACTGCCGTATAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGCGTCATGCGAAGTAAATCCTTGAACTTAGAACTGCCGTATAAG  950

seq1  AATTTTAATCCTTTTACTAAAGGGAAAACCCTAATAGAGCAATGAGTCCG  999
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  -ATTTTAATCCTTTTACTAAAGGGAAAACCCT-ATAGAGCAATGAGTCCG  998

seq1  TCTTTTACTACATTGCCCAAGTCTGATGCACTTCAGAG--AGTTTTCAGA  1047
      ||||||||||||||||||||||||||||||||||||||   |||||||| 
seq2  TCTTTTACTACATTGCCCAAGTCTGATGCACTTCAGAGGAGGTTTTCAGG  1048

seq1  GAATTGCTTATGCAG-TCCTATTT-GTCCACTG  1078
        ||||||||||||| |||||||| ||||||||
seq2  AGATTGCTTATGCAGTTCCTATTTGGTCCACTG  1081