BAC Information

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BAC

Clone NameB6Ng01-230D20
Chromosome1 (Build37)
Map Location 116,422,524 - 116,423,676
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230D20.bB6Ng01-230D20.g
ACCGA043157GA043158
length1,1611,151
definitionB6Ng01-230D20.b B6Ng01-230D20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaacatcagactcccaggaggaagaaagggatcaggaagctga
tgtctctctgtgtgaagtttcccccagagacaaatcctgttattccagac
ttctacatcataaaaaaattaagattttcttaattataagcattcaattt
tgaaaattagttctgaagtgttgtgaagtattcaccagtgaaaactacat
ggacatgggtttaagccaatagacattctttattagtaggctgacaactt
ccctgggtgttcaggaacacagtgtaactcttgcctttctcagggtgaga
gattttaagcagaaaactgtgtcctgggttgacatacttcagttaacaag
aacagttagccagaaacagaactacagaagccaaaaatcaaggtcagtat
atttagagacttttctagaactatggattttgatggattaggcctttgtt
ttagttttggcaggtggttctgtcgacgtgctgagatttacagcctgagt
actactttcactatgaaatcagatttgccaaggtcttggagtctactaag
gtctgaggcacttttacagatgaaacaaataagaatcatatattattaag
gtccttagccattattaataggactctaggagggcatttatgaacattaa
catttgaagatcaatatggaaaagtatacctccaaaaatcattttgtcaa
tatgactcaggttctgtaatttccagagctaacaaggactagaatttgag
aggctgagataaaattaatgatgattcattgacaagcatttccacacaca
aaaaaagaatatctgctctgtgataaaaccatcatacatgtcatacttag
ggtttccattgctatgaagagacacatgaccaaggccactcttataaagg
gcaacatttaattcaggctaggttacagtttcagaggttcactccattat
ttatcaaggcaggaacatggaagcatccaggcaggcacatgctgggagat
gctggagttatacatgatggttccaaaggcagacagggagaggactgact
cccaggcatctagggagggagggttatcaaagcttacccacacaggtgaa
ccactttcatcatacggctatggctacctttcaacagggccatacttcta
atagtgcaact

gaattctgaccatctgtgctctaaatacaggggcacccactttcataaaa
gaaactttagtaaagctcaaagcacacattgtacctcacacaataatagt
ggaagacatcaacaccacactctcaataatggacagatcatgggaacaga
aattaaacagagacatagtaaaacataaaagttatgaaccaaatggtttc
aacagatatagaatataccttcttctcagcaccttatggtacgttctcca
aaactgaccatataattggtcacaaaacaaaaaaggatattgaaattagc
ccatgcattatatcagatcaccatggactaaagttggtcttcaataacaa
caaaatcaatagaaagcccacataaacattgacgtagaataatactctac
tcaatgccaacttggtcaagaaagaaataaagaaagaaattaaagacttt
ttagaattcaatgaaaatgaagccacagcatatagaatgaaagtagtgct
cagaggaaaatcatagttttgagagcttcccaaaagaaactagagagacc
ataaacaagcagctttacagcatatctgaaagctctggaataaaaagaag
caagtacacccaagagaagtagacagcaggaaatagtaaaactctcgact
gaactgaaccaagcagaaaaaaaagaactatacaaaaaaaaaaaaaaaaa
aaagcctggagattgttctttgagaaaatccacaaaatagatcaaccctt
atccccttatcctgactaactagaaggcactgatacagtatcttaattaa
caaaataagaaattaaaatggagacataattacaggaactgaggaaatca
aaaaaaaaaaaaaatcaccagattctattacaaaagcctatactgaacaa
aactggaaaacctggataaattcttagacagataccagggaacaaaagtt
aaatcagtttggattaaccgtctaacagtccatagcccttaagaaataga
ggcagtcattactactccccccccccaaaaaaaagccagacgagggttag
tacagagtcctagactcaagaatatctataccagacctactgtatcagca
tcattgtgattgactctccagtagtttgaatctgtcaaaataggtctgta
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_116422524_116423676
seq2: B6Ng01-230D20.b_44_1204 (reverse)

seq1  AGTGGCACTATTAGAAGGTATGGCCTTGTTGAA--GTAGGCATAGCGGTA  48
      ||| |||||||||||| |||||||| |||||||  |||| |||||| |||
seq2  AGTTGCACTATTAGAA-GTATGGCCCTGTTGAAAGGTAGCCATAGCCGTA  49

seq1  TTGGATG-AAGTGTGTCA-CTGTGTGGGTAAGCTTTGATAA-CCTCC--T  93
      |  |||| |||||  ||| |||||||||||||||||||||| |||||   
seq2  T--GATGAAAGTGGTTCACCTGTGTGGGTAAGCTTTGATAACCCTCCCTC  97

seq1  CCTAGATGCCTGGGAGTCAGTCTTCT-CCTGTCTGCCTTTGGAA-CATCA  141
      |||||||||||||||||||||| ||| ||||||||||||||||| |||||
seq2  CCTAGATGCCTGGGAGTCAGTCCTCTCCCTGTCTGCCTTTGGAACCATCA  147

seq1  TGTATAACT-CAGCATCT-CCAGCATTGTGCCTGCCTGGATGCTTCCATG  189
      ||||||||| |||||||| |||||| ||||||||||||||||||||||||
seq2  TGTATAACTCCAGCATCTCCCAGCA-TGTGCCTGCCTGGATGCTTCCATG  196

seq1  TTCCTGCCTTGAT-AATAATGGAGTGAACCTCTGAAACTGTAACCTAGCC  238
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCTTGATAAATAATGGAGTGAACCTCTGAAACTGTAACCTAGCC  246

seq1  TGAATTAAATGTTGCCCTTTATAAGAGTGGCCTTGGTCATGTGTCTCTTC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAATGTTGCCCTTTATAAGAGTGGCCTTGGTCATGTGTCTCTTC  296

seq1  ATAGCAATGGAAACCCTAAGTATGACATGTATGATGGTTTTATCACAGAG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAATGGAAACCCTAAGTATGACATGTATGATGGTTTTATCACAGAG  346

seq1  CAGATATTCTTTTTTTGTGTGTGGAAATGCTTGTCAATGAATCATCATTA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTCTTTTTTTGTGTGTGGAAATGCTTGTCAATGAATCATCATTA  396

seq1  ATTTTATCTCAGCCTCTCAAATTCTAGTCCTTGTTAGCTCTGGAAATTAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCTCAGCCTCTCAAATTCTAGTCCTTGTTAGCTCTGGAAATTAC  446

seq1  AGAACCTGAGTCATATTGACAAAATGATTTTTGGAGGTATACTTTTCCAT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGAGTCATATTGACAAAATGATTTTTGGAGGTATACTTTTCCAT  496

seq1  ATTGATCTTCAAATGTTAATGTTCATAAATGCCCTCCTAGAGTCCTATTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCTTCAAATGTTAATGTTCATAAATGCCCTCCTAGAGTCCTATTA  546

seq1  ATAATGGCTAAGGACCTTAATAATATATGATTCTTATTTGTTTCATCTGT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGCTAAGGACCTTAATAATATATGATTCTTATTTGTTTCATCTGT  596

seq1  AAAAGTGCCTCAGACCTTAGTAGACTCCAAGACCTTGGCAAATCTGATTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGCCTCAGACCTTAGTAGACTCCAAGACCTTGGCAAATCTGATTT  646

seq1  CATAGTGAAAGTAGTACTCAGGCTGTAAATCTCAGCACGTCGACAGAACC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGAAAGTAGTACTCAGGCTGTAAATCTCAGCACGTCGACAGAACC  696

seq1  ACCTGCCAAAACTAAAACAAAGGCCTAATCCATCAAAATCCATAGTTCTA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCAAAACTAAAACAAAGGCCTAATCCATCAAAATCCATAGTTCTA  746

seq1  GAAAAGTCTCTAAATATACTGACCTTGATTTTTGGCTTCTGTAGTTCTGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCTCTAAATATACTGACCTTGATTTTTGGCTTCTGTAGTTCTGT  796

seq1  TTCTGGCTAACTGTTCTTGTTAACTGAAGTATGTCAACCCAGGACACAGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTAACTGTTCTTGTTAACTGAAGTATGTCAACCCAGGACACAGT  846

seq1  TTTCTGCTTAAAATCTCTCACCCTGAGAAAGGCAAGAGTTACACTGTGTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTTAAAATCTCTCACCCTGAGAAAGGCAAGAGTTACACTGTGTT  896

seq1  CCTGAACACCCAGGGAAGTTGTCAGCCTACTAATAAAGAATGTCTATTGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACACCCAGGGAAGTTGTCAGCCTACTAATAAAGAATGTCTATTGG  946

seq1  CTTAAACCCATGTCCATGTAGTTTTCACTGGTGAATACTTCACAACACTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACCCATGTCCATGTAGTTTTCACTGGTGAATACTTCACAACACTT  996

seq1  CAGAACTAATTTTCAAAATTGAATGCTTATAATTAAGAAAATCTTAATTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTAATTTTCAAAATTGAATGCTTATAATTAAGAAAATCTTAATTT  1046

seq1  TTTTATGATGTAGAAGTCTGGAATAACAGGATTTGTCTCTGGGGGAAACT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGATGTAGAAGTCTGGAATAACAGGATTTGTCTCTGGGGGAAACT  1096

seq1  TCACACAGAGAGACATCAGCTTCCTGATCCCTTTCTTCCTCCTGGGAGTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGAGAGACATCAGCTTCCTGATCCCTTTCTTCCTCCTGGGAGTC  1146

seq1  TGATGTTCTGAATTC  1153
      |||||||||||||||
seq2  TGATGTTCTGAATTC  1161


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