BAC Information

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BAC

Clone NameB6Ng01-230D23
ChromosomeX (Build37)1 (Build37)
Map Location 11,105,956 - 11,106,69456,823,375 - 56,823,903
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTspan7, EG546265, LOC633354, LOC633361, LOC100042912, Mid1ip1, LOC668982, Ppia-psx_105.1, LOC100042922, LOC100042927, LOC100042929, LOC100042931, OTTMUSG00000016790, LOC100042939, LOC100042943, LOC100042944, LOC100042946, EG236663, 8430439B09Rik
Downstream geneLOC669520, Rpl23a-ps, LOC100043945, Bcor, 2900008C10Rik, LOC385323, LOC100043946, LOC628441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230D23.bB6Ng01-230D23.g
ACCGA043163GA043164
length743976
definitionB6Ng01-230D23.b B6Ng01-230D23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,105,956 - 11,106,694)(56,823,375 - 56,823,903)
sequence
gaattcaatagtggattactcgtagccctgtgatttatctgtctcatgaa
aggctctcttagacacacccataggtgtgctcgactaatctcctacgtat
ctttcattcaaaccaaactgacaagatagattaatcatcacagcggactg
tctaagaaccttgtggccaataagatgacttttcttctcttttcttcctt
agctttgcaaacggaaaatgccggacagttaacctcctgaataaaaccag
tacaattgtgagcttagaactttaccctttgctaaactgggtgtgaggta
tattttaacccattctttctgcacttggcaacaattcccatctcacatct
catgaacatgtcccacagaagtgcacaagcactttagactctcgacgtga
atgctccataggttctgtccgttgctgtgccttctcagacaagggttctg
actacagtctggaagcccttgccttctgtcagtcaattctgatccatcta
tggagacagaagggaagagcagagtgccagatagctaccatggacctaga
ggcaggcagtgctactggtaaatgcagggtgagctgctgacactagtctt
tctgtcctcaggtcagatgctgatgtcagcttttgtgtgagactccaacc
aagctgcttgctagctggactctgtctgggtcactcctctccagttgccc
tggggccatgggctaaatggggacaaacacacttcacacacac
gaattcctcgtaggccttgagcttaaattctgaggaagtctcccccgaca
cgggggggggaagatggcctgtttctaagggtatggattcctcaggccac
acagacttcaaatatgttccatagatcgaaggcttagggacaagagctgt
taggagaggaaagattaccgctactctcttctgataaaagattgttgttg
ttttggtggtggtggttcatgtaacttatgctggccttgatcactccatg
taaaaaaaaatggcatgaaatttctgatcttcttgcctcccctttccatg
tgctgggttattggcacttgcccctacatctggttttggtggtgctatac
atggaacccaaggctttgtgcttgctaggcaaatattttacccctcgagc
tatatccccgacccgccatatgatttctgaatgacaatctactggctgga
cattgatatttttctgtatatacatatatgaaattttatgtattaaattg
aacctatattgtcagaaacctatgctgggtgcatgatttcagggcagtga
aatgcaaagaatgggaaattgattttttagcccctaatgaactctaatga
acaacaacaccagaatactgatctcctgatgtaaattgattccccagaaa
gggttgtgtaaatcaatgggagagatgggagagatactgatggacaggtc
tctctgtctctctgcctctcttccattctccctccattcatttccttctt
accctcttgctaaaaatagatgataccaagaaagagaagagttagatgca
actttaatttttttttttaaatcttattttttaatgatggttcttaaatg
ctttaacctgcctttagcccatccattccaccagagtagtgggaaagaaa
ggatatggggggaagttggacctgttttaggatgttcttgggagtcaact
cttcatttactgttgtctcggaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_11105956_11106694
seq2: B6Ng01-230D23.b_43_785

seq1  GAATTCAATAGTGGATTAGTCAGAGCCCTGTGATTTAACTGTCTCAGGAA  50
      |||||||||||||||||| ||  |||||||||||||| |||||||| |||
seq2  GAATTCAATAGTGGATTACTCGTAGCCCTGTGATTTATCTGTCTCATGAA  50

seq1  AGGCTCTCATAGACACACCCAGAGGTGTGCTCGACTAATCTCCTAGGTAT  100
      |||||||| |||||||||||| ||||||||||||||||||||||| ||||
seq2  AGGCTCTCTTAGACACACCCATAGGTGTGCTCGACTAATCTCCTACGTAT  100

seq1  CTTTCAATCAAACCAAACTGACAAGCAAGATTAATCATCACAGCGGACTG  150
      |||||| ||||||||||||||||||  |||||||||||||||||||||||
seq2  CTTTCATTCAAACCAAACTGACAAGATAGATTAATCATCACAGCGGACTG  150

seq1  TCTAAGAACCTTGTGGCCAAGAAGATGACTTTTCTTCTCTTTTCTTCCTT  200
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTAAGAACCTTGTGGCCAATAAGATGACTTTTCTTCTCTTTTCTTCCTT  200

seq1  AGCTTTGCAAACGGAAAATGCCGGACAGTTAACCTCCTGAATAAAACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCAAACGGAAAATGCCGGACAGTTAACCTCCTGAATAAAACCAG  250

seq1  GACAATTGTGAGCAGAGAACTTTACCCAGTGCTGAACTGGGTGTGAGGCA  300
       ||||||||||||  ||||||||||||  |||| |||||||||||||| |
seq2  TACAATTGTGAGCTTAGAACTTTACCCTTTGCTAAACTGGGTGTGAGGTA  300

seq1  GAGTTTAACACATCCATTCTGCACATGGCAGCAATTCCCATCTCACAACT  350
       | |||||| ||| | |||||||| ||||| |||||||||||||||| ||
seq2  TATTTTAACCCATTCTTTCTGCACTTGGCAACAATTCCCATCTCACATCT  350

seq1  CAGGAACAGGTCCCACAGAAGTGCACAAGCACTTTAGACTCTCGACGTGA  400
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACATGTCCCACAGAAGTGCACAAGCACTTTAGACTCTCGACGTGA  400

seq1  ATGCTCCAAAGGTTCTGTCCGTTGCTGTGCCTTCAGAGACAAGGGTTCTG  450
      |||||||| |||||||||||||||||||||||||  ||||||||||||||
seq2  ATGCTCCATAGGTTCTGTCCGTTGCTGTGCCTTCTCAGACAAGGGTTCTG  450

seq1  ACTACAGTCAGGAAGCCCTTGCCTTCTGTCAGTCAATTCTGATCCATCTA  500
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGTCTGGAAGCCCTTGCCTTCTGTCAGTCAATTCTGATCCATCTA  500

seq1  TGGAGACAGAAGGGAAGAGCAGAGTGCCAGAAAGCTACCATGGACATAGA  550
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  TGGAGACAGAAGGGAAGAGCAGAGTGCCAGATAGCTACCATGGACCTAGA  550

seq1  GGCAGGCAGCCAGAGTGGTAAATGCAGGGTGAGCTGCTGCCACAAGTCTT  600
      |||||||||    | |||||||||||||||||||||||| ||| ||||||
seq2  GGCAGGCAGTGCTACTGGTAAATGCAGGGTGAGCTGCTGACACTAGTCTT  600

seq1  TCTGCCCTCAGGTCAGAGGCTGAGGCCAGCTTTTGCAAGAGACTCCAACC  650
      |||| |||||||||||| ||||| | |||||||||   ||||||||||||
seq2  TCTGTCCTCAGGTCAGATGCTGATGTCAGCTTTTGTGTGAGACTCCAACC  650

seq1  AAGCTGCTTGCAGAGCTGGACTCTGCCTGGCTCACTCCTCTCCAGTTGCC  700
      |||||||||||  |||||||||||| |||| |||||||||||||||||||
seq2  AAGCTGCTTGC-TAGCTGGACTCTGTCTGGGTCACTCCTCTCCAGTTGCC  699

seq1  CTGGGGCCATGGGCTAAATGGTAACACACA-----CACACACAC  739
      |||||||||||||||||||||  ||| |||     |||||||||
seq2  CTGGGGCCATGGGCTAAATGGGGACAAACACACTTCACACACAC  743

seq1: chr1_56823375_56823903
seq2: B6Ng01-230D23.g_503_1040 (reverse)

seq1  GATTTCC-AGACAACA-TAAATG-AGAGTTG-CTCCAAAGAACATTCCTA  46
      ||||||| |||||||| |||||| ||||||| |||| |||||||| |  |
seq2  GATTTCCGAGACAACAGTAAATGAAGAGTTGACTCCCAAGAACATCCTAA  50

seq1  AACAGGTCC-ACTT-CCCCCATATCCTTTCTTTCCCACTACCTCTGGTGG  94
      ||||||||| |||| ||||||||||||||||||||||||| |||||||||
seq2  AACAGGTCCAACTTCCCCCCATATCCTTTCTTTCCCACTA-CTCTGGTGG  99

seq1  -ATGGGTGGGCTAAAGGCAGGTTAAAGCATTTAAGAACCATCATT-AAAA  142
       |||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATGGATGGGCTAAAGGCAGGTTAAAGCATTTAAGAACCATCATTAAAAA  149

seq1  ATAAGATTT-AAAAAAAAAATTAAAGTTGCATCTAACTCTTCTC-TTCTT  190
      ||||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  ATAAGATTTAAAAAAAAAAATTAAAGTTGCATCTAACTCTTCTCTTTCTT  199

seq1  GGTATCATCTATTTTTAGCAAGAGGGTAAGAAGGAAATGAATGGAGGGAG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCATCTATTTTTAGCAAGAGGGTAAGAAGGAAATGAATGGAGGGAG  249

seq1  AATGGAAGAGAGGCAGAGAGACAGAGAGACCTGTCCATCAGTATCTCTCC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGAGAGGCAGAGAGACAGAGAGACCTGTCCATCAGTATCTCTCC  299

seq1  CATCTCTCCCATTGATTTACACAACCCTTTCTGGGGAATCAATTTACATC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCCATTGATTTACACAACCCTTTCTGGGGAATCAATTTACATC  349

seq1  AGGAGATCAGTATTCTGGTGTTGTTGTTCATTAGAGTTCATTAGGGGCTA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATCAGTATTCTGGTGTTGTTGTTCATTAGAGTTCATTAGGGGCTA  399

seq1  AAAAATCAATTTCCCATTCTTTGCATTTCACTGCCCTGAAATCATGCACC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAATTTCCCATTCTTTGCATTTCACTGCCCTGAAATCATGCACC  449

seq1  CAGCATAGGTTTCTGACAATATAGGTTCAATTTAATACCTAATATCTCAC  490
      |||||||||||||||||||||||||||||||||||||| ||| || ||| 
seq2  CAGCATAGGTTTCTGACAATATAGGTTCAATTTAATACATAAAATTTCAT  499

seq1  TTTTGTACTAACAGAAAAAGATCAATGTCCAGCCAGTAG  529
       | ||||   ||||||||| |||||||||||||||||||
seq2  ATATGTATATACAGAAAAATATCAATGTCCAGCCAGTAG  538