BAC Information

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BAC

Clone NameB6Ng01-230G15
Chromosome1 (Build37)
Map Location 38,608,636 - 38,821,692
singlet/doubletdoublet
Overlap geneAff3
Upstream gene2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123
Downstream geneLonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230G15.bB6Ng01-230G15.g
ACCGA043284GA043285
length1,134843
definitionB6Ng01-230G15.b B6Ng01-230G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,608,636 - 38,609,778)(38,820,850 - 38,821,692)
sequence
gaattctattttgagcggctgtcactgaccagtgtctacaaaccttacat
accaaggaagccatcaataatgtaacagcactctagcattaatattaagc
acatcacatttttttcttaaacactaaagcttaagattaacagactctca
ttctttcactatgaaaatatttgtaattcaaaaaattcaacatatcattt
cctagtcacataaattattaaatgctttgaattcttgaaagattaataaa
tactaaggactacatattttcactgataatcagaaaaaaacgtacctatt
aaaggtaaaaccatttttaccttcttggaaatcttggaaaagattttcta
aaatttggtagtgttgagtgtcaggtgacactggcttcccacacagctga
agggtgagatcagaataaactgactgaagacaatactgtaatctgcaaca
tacttctagaaccttaaaaaaaaataacctatagacttaaagatatctcc
ctaggtatataaaaaagtaaactgttagaaatttggatttatgtccatgt
attttcatttagagattatatatgagaaggaactagaaaaatatattgta
caacaatcagaatgtaattaaatcattacttacagaaccataaaactctt
gtacttcaatattcagtgtcacagaaaatttatagttcactcttaaatgg
gaaaagattaaagatgataacagtttttctcagattatgcaatggtatat
ttgtgatgagcgtttatgttgcgtaggcatgcgtgcttggaaacaagaaa
atctaacaatgttgcaaatggttcctcccgagccgcagagattgggactt
catgaactttttccgcatgcctgttctcctgaattctttacctttaacgt
gcatttccctggcactcattagggtgggatactcttaaaagaacagaaaa
cataaagtgatgtgacactggaaaaactggagctctgtgacctgtcagga
ccatgtaaaatggctaggctcctagattaggttgcagactaacaatacat
ttctgatcgtatcctaagcagcagaagcaggtcttagggaaatgtgcaga
gaacacctaatgtgcaagccactcgactcggcag
gaattcatgtttctgcttccacccagcacagtacatatcaaattacagag
aaatcagaatgtctgcagataaaattagagtgcagagtttaatcaagtca
tcagagtaaattgccacgaaatggggaatgttctcatggccctaattctg
aacgcgttccttaaacaaaggacatcatgctttgattctatttgttcaga
ggcctgtattctactaatgcatgtttttccaatatgatttagaacacagg
agtggtaagtgaaagttaggtcattttgtcagatacgttgattttccagc
tggcaattacagagctgaataaggcacggctcaatgtaaccgatacgcat
ttaatctggttacgatctagtatttgggattttgtgcttagagtatcaga
tccctggggctttgtgcttatttagagcctgtcaattaagacacaagtat
cttccaggaagcctggaactgcctgattctcgaaaaggaggataaatgca
caaagacccagggctgtttcaggctggaagcacgtaagtcacctcttggt
ctattcatgtagctttacccctgagatcagaggcaaaccgtccaggactc
cccaggcagaacttgaaaatgggcagttacattggtttctgaggatggcc
atgttgaattatcacagactgtctcagcaatgggggttcattccctcaca
ctcggctgaacatcaaggctctgttccatgctgttctctgtgccttgaag
actggtgtctttatgatcacatggtgttaacctctgtgagcgttcagatg
ccccccttgtatgtatgtatgtatgtatgtatgtatgtatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_38608636_38609778
seq2: B6Ng01-230G15.b_44_1177

seq1  GAATTCTATTTTGAGCGGCTGTCACTGACCAGTGTCTACAAACCTTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTTGAGCGGCTGTCACTGACCAGTGTCTACAAACCTTACAT  50

seq1  ACCAAGGAAGCCATCAATAATGTAACAGCACTCTAGCATTAATATTAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGAAGCCATCAATAATGTAACAGCACTCTAGCATTAATATTAAGC  100

seq1  ACATCACATTTTTTTCTTAAACACTAAAGCTTAAGATTAACAGACTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACATTTTTTTCTTAAACACTAAAGCTTAAGATTAACAGACTCTCA  150

seq1  TTCTTTCACTATGAAAATATTTGTAATTCAAAAAATTCAACATATCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCACTATGAAAATATTTGTAATTCAAAAAATTCAACATATCATTT  200

seq1  CCTAGTCACATAAATTATTAAATGCTTTGAATTCTTGAAAGATTAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCACATAAATTATTAAATGCTTTGAATTCTTGAAAGATTAATAAA  250

seq1  TACTAAGGACTACATATTTTCACTGATAATCAGAAAAAAACGTACCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGGACTACATATTTTCACTGATAATCAGAAAAAAACGTACCTATT  300

seq1  AAAGGTAAAACCATTTTTACCTTCTTGGAAATCTTGGAAAAGATTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAAACCATTTTTACCTTCTTGGAAATCTTGGAAAAGATTTTCTA  350

seq1  AAATTTGGTAGTGTTGAGTGTCAGGTGACACTGGCTTCCCACACAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGGTAGTGTTGAGTGTCAGGTGACACTGGCTTCCCACACAGCTGA  400

seq1  AGGGTGAGATCAGAATAAACTGACTGAAGACAATACTGTAATCTGCAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGATCAGAATAAACTGACTGAAGACAATACTGTAATCTGCAACA  450

seq1  TACTTCTAGAACCTTAAAAAAAAATAACCTATAGACTTAAAGATATCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTAGAACCTTAAAAAAAAATAACCTATAGACTTAAAGATATCTCC  500

seq1  CTAGGTATATAAAAAAGTAAACTGTTAGAAATTTGGATTTATGTCCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTATATAAAAAAGTAAACTGTTAGAAATTTGGATTTATGTCCATGT  550

seq1  ATTTTCATTTAGAGATTATATATGAGAAGGAACTAGAAAAATATATTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTAGAGATTATATATGAGAAGGAACTAGAAAAATATATTGTA  600

seq1  CAACAATCAGAATGTAATTAAATCATTACTTACAGAACCATAAAACTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATCAGAATGTAATTAAATCATTACTTACAGAACCATAAAACTCTT  650

seq1  GTACTTCAATATTCAGTGTCACAGAAAATTTATAGTTCACTCTTAAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCAATATTCAGTGTCACAGAAAATTTATAGTTCACTCTTAAATGG  700

seq1  GAAAAGATTAAAGATGATAACAGTTTTTCTCAGATTATGCAATGGTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGATTAAAGATGATAACAGTTTTTCTCAGATTATGCAATGGTATAT  750

seq1  TTGTGATGAGCGTTTATGTTGCGTAGGCATGCGTGCTTGGAAACAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATGAGCGTTTATGTTGCGTAGGCATGCGTGCTTGGAAACAAGAAA  800

seq1  ATCTAACAATGTTGCAAATGGTTCCTCCCGAGCCGCAGAGATTGGGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACAATGTTGCAAATGGTTCCTCCCGAGCCGCAGAGATTGGGACTT  850

seq1  CATGAACTTTTTCCGCATGCCTGTTTCTCCTGAATTCTTTACCTTTAACG  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATGAACTTTTTCCGCATGCCTG-TTCTCCTGAATTCTTTACCTTTAACG  899

seq1  TGCATTTCCCTGGCACTCATTAGGGTGGGATACTCTTAAAAGAACAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCCCTGGCACTCATTAGGGTGGGATACTCTTAAAAGAACAGAAA  949

seq1  ACAATAAAGTGATTGTGACACTGGAAAAACTGGAGCTCTTGTGACCTGTC  1000
      || ||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  AC-ATAAAGTGA-TGTGACACTGGAAAAACTGGAGCTC-TGTGACCTGTC  996

seq1  AGGACCATGTAAAATGGCTAGGCTCCTAGGATTAGGTTGCAGACTAACAA  1050
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGGACCATGTAAAATGGCTAGGCTCCTA-GATTAGGTTGCAGACTAACAA  1045

seq1  TACATTTCTGGTTCCGTATCCCAAAGCAGCAGAAGCAGGGTCTTAAGGAG  1100
      |||||||||| |  ||||| || |||||||||||||| ||||||| ||| 
seq2  TACATTTCTGAT--CGTAT-CCTAAGCAGCAGAAGCA-GGTCTTAGGGAA  1091

seq1  ATGTGCAGAGAACACC-CATGTGCATAGCCACTCGGCTCGGCAG  1143
      ||||||||||||||||  ||||||| ||||||||| ||||||||
seq2  ATGTGCAGAGAACACCTAATGTGCA-AGCCACTCGACTCGGCAG  1134

seq1: chr1_38820850_38821692
seq2: B6Ng01-230G15.g_66_908 (reverse)

seq1  TACATACATACATACATACATACATACATACATACAAGGGGGGCATCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATACATACATACATACATACATACATACAAGGGGGGCATCTGA  50

seq1  ACGCTCACAGAGGTTAACACCATGTGATCATAAAGACACCAGTCTTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCACAGAGGTTAACACCATGTGATCATAAAGACACCAGTCTTCAAG  100

seq1  GCACAGAGAACAGCATGGAACAGAGCCTTGATGTTCAGCCGAGTGTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGAACAGCATGGAACAGAGCCTTGATGTTCAGCCGAGTGTGAGG  150

seq1  GAATGAACCCCCATTGCTGAGACAGTCTGTGATAATTCAACATGGCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAACCCCCATTGCTGAGACAGTCTGTGATAATTCAACATGGCCATC  200

seq1  CTCAGAAACCAATGTAACTGCCCATTTTCAAGTTCTGCCTGGGGAGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAACCAATGTAACTGCCCATTTTCAAGTTCTGCCTGGGGAGTCCT  250

seq1  GGACGGTTTGCCTCTGATCTCAGGGGTAAAGCTACATGAATAGACCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGTTTGCCTCTGATCTCAGGGGTAAAGCTACATGAATAGACCAAGA  300

seq1  GGTGACTTACGTGCTTCCAGCCTGAAACAGCCCTGGGTCTTTGTGCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTTACGTGCTTCCAGCCTGAAACAGCCCTGGGTCTTTGTGCATTT  350

seq1  ATCCTCCTTTTCGAGAATCAGGCAGTTCCAGGCTTCCTGGAAGATACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTTTTCGAGAATCAGGCAGTTCCAGGCTTCCTGGAAGATACTTG  400

seq1  TGTCTTAATTGACAGGCTCTAAATAAGCACAAAGCCCCAGGGATCTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAATTGACAGGCTCTAAATAAGCACAAAGCCCCAGGGATCTGATA  450

seq1  CTCTAAGCACAAAATCCCAAATACTAGATCGTAACCAGATTAAATGCGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGCACAAAATCCCAAATACTAGATCGTAACCAGATTAAATGCGTA  500

seq1  TCGGTTACATTGAGCCGTGCCTTATTCAGCTCTGTAATTGCCAGCTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTACATTGAGCCGTGCCTTATTCAGCTCTGTAATTGCCAGCTGGAA  550

seq1  AATCAACGTATCTGACAAAATGACCTAACTTTCACTTACCACTCCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACGTATCTGACAAAATGACCTAACTTTCACTTACCACTCCTGTGT  600

seq1  TCTAAATCATATTGGAAAAACATGCATTAGTAGAATACAGGCCTCTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATCATATTGGAAAAACATGCATTAGTAGAATACAGGCCTCTGAAC  650

seq1  AAATAGAATCAAAGCATGATGTCCTTTGTTTAAGGAACGCGTTCAGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAATCAAAGCATGATGTCCTTTGTTTAAGGAACGCGTTCAGAATT  700

seq1  AGGGCCATGAGAACATTCCCCATTTCGTGGCAATTTACTCTGATGACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATGAGAACATTCCCCATTTCGTGGCAATTTACTCTGATGACTTG  750

seq1  ATTAAACTCTGCACTCTAATTTTATCTGCAGACATTCTGATTTCTCTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTCTGCACTCTAATTTTATCTGCAGACATTCTGATTTCTCTGTA  800

seq1  ATTTGATATGTACTGTGCTGGGTGGAAGCAGAAACATGAATTC  843
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATATGTACTGTGCTGGGTGGAAGCAGAAACATGAATTC  843