BAC Information

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BAC

Clone NameB6Ng01-230L15
Chromosome1 (Build37)5 (Build37)
Map Location 8,079,949 - 8,081,07958,660,008 - 58,660,042
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
Downstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230L15.bB6Ng01-230L15.g
ACCGA043517GA043518
length1,138728
definitionB6Ng01-230L15.b B6Ng01-230L15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,079,949 - 8,081,079)(58,660,008 - 58,660,042)
sequence
gaattcacctgcctctgcctcccaagtactggcatttcaggtgtgtgcca
ctactgcccggctatactcttgtttgaatcttagatactattatggtttg
aatgtgtttatctccacaatttttttttttttgtttttttcgagacaggg
tttctctgcatagtcctggctatcctggaactcactggcctcgaactcag
aaatctgcctgcctctgcctcccgagtgctgggattaaaggcatgcacaa
ccacacccggccacaaattcatttttaatgtgacatttttaaaacacaaa
acctctggagagaaccctcatagtaaatcacctatcctatcacaggagct
ttataaagtataagattttctgctctgccctgttttcttatagcagtaag
cagaactcatgcatataaaatcaagctctatcaatatatagaaatttcca
ggacttcgcttttggactttaaatgtaaagaactgtgaaagaaatacatt
tttttttctgaatcactaagtgtgtgggattttggtacagtagcatgagt
attgagaaagattctgtatatgctttaatgtaagttggaaagtattagaa
acggaggcaagtaaagcagtgtcagtatttaagttaattcaactgagagc
tgcatgtttttactatggaaccttgattcctgtgtcatgaactttctcta
atattcttattatctttgtcttccttctcaactgtagacctctacagagc
atttctcaagctcttccaaaagagtcgtcaacatacagacatacagagaa
gaagagaaaacagtcagttggatggacatgtatagagagaataaccaaca
gaaaggcacacagagaatatccagcaaacatacataggaataagcaagat
cattatgtggggcagtgggctgcatacagaacagcttggtcctccagtct
ggcaaaagtcttggaacgccaacacctgatggggtgggtgatttaccacc
tacttaggatggaaggtgttggatcatgtctcttggacccctggctctgt
cgaagtaaccgccccacagccctgagggaataggtggtgcgggcttatca
gtcaagtagagcagctactagccttccacacgcaaata

gaattctcacctgagttaataccgaatggcagagaagcacctgaaaaaat
gttcaacatccttaatcatcagggaaatgcaactcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctgagatcaaaaattcagatgacag
cagatgttggcgaggatgtggagaaagaggaacactcctccattgttggt
gggattgcaagcttgtacaacctctctggaaatcagtttggcagttcctc
agaaaactggacataatactaccagaggatccagcaatacctctcctggg
catatatccagaagatgttccaaccggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaatagaggaatggatgcagaaaatgtggtacatttacacaat
ggagtactactcagctattaagactgccatatccaggaatccatcccata
atcagcttctaaaggctgacaccattgcatacactagcaagattttgctg
aaaggacccagatatagctgtctcttgtgagacaatgccagggcctagca
aacacagaagtggatgctcacagtcagctattggatgtatcacagggctc
tcaatggaggagctagagaaaagtacctaaggggctaaaagggatctgca
accctatagggtggaacaacattatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_8079949_8081079
seq2: B6Ng01-230L15.b_48_1185 (reverse)

seq1  TATTTGCGTGTGGGAAGGCTTGGTGCTGCTTCTACTTGACTGATA--GCC  48
      ||||||||||| |||||||| |  ||||| |||||||||||||||   ||
seq2  TATTTGCGTGT-GGAAGGCTAGTAGCTGC-TCTACTTGACTGATAAGCCC  48

seq1  GCA-CACCTCTCCTCGAGGGGCTGTGGGGGCGGTAACTTCGACAGGAGCC  97
      ||| ||||| | | |   ||||||| |||||||| ||||||||| |||||
seq2  GCACCACCTATTCCCTCAGGGCTGT-GGGGCGGTTACTTCGACA-GAGCC  96

seq1  AGGGGTCCAGGAGACATGATCAAACACCTTCCATCCTAAGTAGGT-GTAA  146
      ||||||||| ||||||||||| ||||||||||||||||||||||| ||||
seq2  AGGGGTCCAAGAGACATGATCCAACACCTTCCATCCTAAGTAGGTGGTAA  146

seq1  ATCACC--ACCCATCAGGTGTTGGCGTTCC-AGACTTTTGCCAGACTGGA  193
      ||||||   ||||||||||||||||||||| |||||||||||||||||||
seq2  ATCACCCACCCCATCAGGTGTTGGCGTTCCAAGACTTTTGCCAGACTGGA  196

seq1  -GACCAAGCTG-TCTGTATGCAGCCCACTGCCCCACAT-ATGATCTTGCT  240
       |||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  GGACCAAGCTGTTCTGTATGCAGCCCACTGCCCCACATAATGATCTTGCT  246

seq1  TATT-CTATGTATGTTTGCTGGATATTCTCTGTGTGCCTTTCTGTTGGTT  289
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTATGTATGTTTGCTGGATATTCTCTGTGTGCCTTTCTGTTGGTT  296

seq1  ATTCTCTCTATACATGTCCATCCAACTGACTGTTTTCTCTTCTTCTCTGT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCTATACATGTCCATCCAACTGACTGTTTTCTCTTCTTCTCTGT  346

seq1  ATGTCTGTATGTTGACGACTCTTTTGGAAGAGCTTGAGAAATGCTCTGTA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTATGTTGACGACTCTTTTGGAAGAGCTTGAGAAATGCTCTGTA  396

seq1  GAGGTCTACAGTTGAGAAGGAAGACAAAGATAATAAGAATATTAGAGAAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTACAGTTGAGAAGGAAGACAAAGATAATAAGAATATTAGAGAAA  446

seq1  GTTCATGACACAGGAATCAAGGTTCCATAGTAAAAACATGCAGCTCTCAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGACACAGGAATCAAGGTTCCATAGTAAAAACATGCAGCTCTCAG  496

seq1  TTGAATTAACTTAAATACTGACACTGCTTTACTTGCCTCCGTTTCTAATA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTAACTTAAATACTGACACTGCTTTACTTGCCTCCGTTTCTAATA  546

seq1  CTTTCCAACTTACATTAAAGCATATACAGAATCTTTCTCAATACTCATGC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAACTTACATTAAAGCATATACAGAATCTTTCTCAATACTCATGC  596

seq1  TACTGTACCAAAATCCCACACACTTAGTGATTCAGAAAAAAAAATGTATT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTACCAAAATCCCACACACTTAGTGATTCAGAAAAAAAAATGTATT  646

seq1  TCTTTCACAGTTCTTTACATTTAAAGTCCAAAAGCGAAGTCCTGGAAATT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACAGTTCTTTACATTTAAAGTCCAAAAGCGAAGTCCTGGAAATT  696

seq1  TCTATATATTGATAGAGCTTGATTTTATATGCATGAGTTCTGCTTACTGC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATATTGATAGAGCTTGATTTTATATGCATGAGTTCTGCTTACTGC  746

seq1  TATAAGAAAACAGGGCAGAGCAGAAAATCTTATACTTTATAAAGCTCCTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAAAACAGGGCAGAGCAGAAAATCTTATACTTTATAAAGCTCCTG  796

seq1  TGATAGGATAGGTGATTTACTATGAGGGTTCTCTCCAGAGGTTTTGTGTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGATAGGTGATTTACTATGAGGGTTCTCTCCAGAGGTTTTGTGTT  846

seq1  TTAAAAATGTCACATTAAAAATGAATTTGTGGCCGGGTGTGGTTGTGCAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGTCACATTAAAAATGAATTTGTGGCCGGGTGTGGTTGTGCAT  896

seq1  GCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTC  946

seq1  GAGGCCAGTGAGTTCCAGGATAGCCAGGACTATGCAGAGAAACCCTGTCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGTGAGTTCCAGGATAGCCAGGACTATGCAGAGAAACCCTGTCT  996

seq1  CGAAAAAAACAAAAAAAAAAAAATTGTGGAGATAAACACATTCAAACCAT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAAAACAAAAAAAAAAAAATTGTGGAGATAAACACATTCAAACCAT  1046

seq1  AATAGTATCTAAGATTCAAACAAGAGTATAGCCGGGCAGTAGTGGCACAC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATCTAAGATTCAAACAAGAGTATAGCCGGGCAGTAGTGGCACAC  1096

seq1  ACCTGAAATGCCAGTACTTGGGAGGCAGAGGCAGGTGAATTC  1131
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAATGCCAGTACTTGGGAGGCAGAGGCAGGTGAATTC  1138


seq1: chr5_58660008_58660042
seq2: B6Ng01-230L15.g_760_795 (reverse)

seq1  TTCATAATGTTGTTCCA-CCGATAGGGTTGCAGATC  35
      ||||||||||||||||| || |||||||||||||||
seq2  TTCATAATGTTGTTCCACCCTATAGGGTTGCAGATC  36


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