BAC Information

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BAC

Clone NameB6Ng01-230N20
Chromosome1 (Build37)
Map Location 190,901,943 - 191,039,457
singlet/doubletdoublet
Overlap geneKcnk2
Upstream geneEsrrg, Ush2a, Kctd3
Downstream geneLOC100042424, LOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2, Prox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230N20.bB6Ng01-230N20.g
ACCGA043617GA043618
length1,125992
definitionB6Ng01-230N20.b B6Ng01-230N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,901,943 - 190,903,061)(191,038,469 - 191,039,457)
sequence
gaattccaaagcttctcttagttctcaccctgtaaactggctctgaactt
ggctaccgtgcccttctgcgtgttctgcctggacatgcttgctgacttta
aatctatgctatgccagagagcaggggattccaggacagaggaaaacaga
gggagacatgggaagacaccaactgttctgttctactcttgtttatccag
actgggtttcagccccactttaagacctccttgtatatccatttgtagtg
tgttcccaaccattacagggtccttgggttgcactccaaggtgaccagaa
cagttagttctcggttctccccttacaacaataacataaaagactgtcaa
gggccaatttccatcttctccctgtgtctgtctttcaatgtttgtcaaca
atagcaagcagacctatttggcaagtttggcaagcatggcttcaacatct
tttgctagggtcatatactgtagactatagatttgcccaggaaattggaa
ggtgtgacacatgctggtcctgggctggaaataatattcttcagcctgtt
tcctattgtcaaccagtttggtttcctggattgctccatcccagtgtgaa
atcctcatatactgaagcactcctcaatgagttcaacttgagctcagtca
cagatgacttcagcccctacctagtagtggaatttcataggtcagagcct
tatgacctaatgaagtatgaagcatgggacccgtagagttggaagaattg
acttttttttattacgtattttcctcaattacatttccaatgctatccca
aaagtcccccatacccccccttcccacttccctacccacccattcccatt
ttttttggccctggcgttcccctgtactggggcatataaagtttgtgtgt
ccaatgggcctctctttccagtgatgggccgactaggccatctttttgat
acatatgtagctagggtcaagagctccggggtactggtttagtcctatgt
tgttccatctatagggttgcaagttccctttagcttcttgggtactttct
ctagctccttcaattgggggtcctgtgattcaatccaatagctgacctgt
gagcatccactcctgtgcttgctag

gaattctttgtatttctcagaaaggtttgtagctttaaaattaatcaata
atgatgatatcgttgggcgtcatatcagcactggcctcgtatttaccaac
cacagagttctttgtgttttcaggatactctcacaggcatgcacatgtgt
gctcgctcacctctcctgctctgtcttctgtagcagctgatctctcgtgc
tttattctaatgagtctgatgctcaagaatggatgctaactgcctgccta
tgggcacgcaggacatgattatacactgagtcatttcctcatttccctgc
ccggttctgacttgccacatcacagctgagatgccttacagaggttcttt
gtccactattggggattctatcgaaattaggagaaatcacactctgcaga
gtgagaagaaataacctcccaggcgagaggtcaaatacaactaaaagata
agagacaagcagcccaggaccctggacaagccaaagccttttggcagttg
ccattttcctaacggctgcaaaactctggctttgcagagagttctctctg
ccatgagcagcccgcgaggccttggtgactttgtgaaatctgcttcttga
gagaaaattcaggtaaaacccaaggaaagttttctgctttctccagacct
tcaggaccccttcattttcaagttgcaatgaagacaaagttgaaatattt
agctttctgggatttgggttggggtgccaagaatcaaatcctatttctgg
tgtggaaagacagagttttgtgtttatgggtatgcaaaaaagaaaaaaag
atagtgtgggggctgccaagaatttctgactgcaaatgaattctcagtaa
aagagccatctttgttaacactggtctgggtgtgagtatgtcgtatccta
gaaattttacgggtctgtatatgtgcctgctgttgctctcttaggatgct
gcttttttcctttccttctttttggaattgttatagcactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190901943_190903061
seq2: B6Ng01-230N20.b_47_1171

seq1  GAATTCCAAAGCTTCTCTTAGTTCTCACCCTGTAAACTGGCTCTGAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGCTTCTCTTAGTTCTCACCCTGTAAACTGGCTCTGAACTT  50

seq1  GGCTACCGTGCCCTTCTGCGTGTTCTGCCTGGACATGCTTGCTGACTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCGTGCCCTTCTGCGTGTTCTGCCTGGACATGCTTGCTGACTTTA  100

seq1  AATCTATGCTATGCCAGAGAGCAGGGGATTCCAGGACAGAGGAAAACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGCTATGCCAGAGAGCAGGGGATTCCAGGACAGAGGAAAACAGA  150

seq1  GGGAGACATGGGAAGACACCAACTGTTCTGTTCTACTCTTGTTTATCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACATGGGAAGACACCAACTGTTCTGTTCTACTCTTGTTTATCCAG  200

seq1  ACTGGGTTTCAGCCCCACTTTAAGACCTCCTTGTATATCCATTTGTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTTTCAGCCCCACTTTAAGACCTCCTTGTATATCCATTTGTAGTG  250

seq1  TGTTCCCAACCATTACAGGGTCCTTGGGTTGCACTCCAAGGTGACCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAACCATTACAGGGTCCTTGGGTTGCACTCCAAGGTGACCAGAA  300

seq1  CAGTTAGTTCTCGGTTCTCCCCTTACAACAATAACATAAAAGACTGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGTTCTCGGTTCTCCCCTTACAACAATAACATAAAAGACTGTCAA  350

seq1  GGGCCAATTTCCATCTTCTCCCTGTGTCTGTCTTTCAATGTTTGTCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAATTTCCATCTTCTCCCTGTGTCTGTCTTTCAATGTTTGTCAACA  400

seq1  ATAGCAAGCAGACCTATTTGGCAAGTTTGGCAAGCATGGCTTCAACATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAGCAGACCTATTTGGCAAGTTTGGCAAGCATGGCTTCAACATCT  450

seq1  TTTGCTAGGGTCATATACTGTAGACTATAGATTTGCCCAGGAAATTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGGGTCATATACTGTAGACTATAGATTTGCCCAGGAAATTGGAA  500

seq1  GGTGTGACACATGCTGGTCCTGGGCTGGAAATAATATTCTTCAGCCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGACACATGCTGGTCCTGGGCTGGAAATAATATTCTTCAGCCTGTT  550

seq1  TCCTATTGTCAACCAGTTTGGTTTCCTGGATTGCTCCATCCCAGTGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTGTCAACCAGTTTGGTTTCCTGGATTGCTCCATCCCAGTGTGAA  600

seq1  ATCCTCATATACTGAAGCACTCCTCAATGAGTTCAACTTGAGCTCAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATATACTGAAGCACTCCTCAATGAGTTCAACTTGAGCTCAGTCA  650

seq1  CAGATGACTTCAGCCCCTACCTAGTAGTGGAATTTCATAGGTCAGAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGACTTCAGCCCCTACCTAGTAGTGGAATTTCATAGGTCAGAGCCT  700

seq1  TATGACCTAATGAAGTATGAAGCATGGGACCCGTAGAGTTGGAAGAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCTAATGAAGTATGAAGCATGGGACCCGTAGAGTTGGAAGAATTG  750

seq1  ACTTTTTTTTATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCCA  800

seq1  AAAGTCCCCCATACCCCCCCTTCCCACTTCCCTACCCACCCATTCCCA-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAGTCCCCCATACCCCCCCTTCCCACTTCCCTACCCACCCATTCCCATT  850

seq1  TTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGTGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGTGTGT  900

seq1  CCAATGGGCCTCTCTTTCCAGTGAT-GGCCGACTAGGCCATC-TTTTGAT  947
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  CCAATGGGCCTCTCTTTCCAGTGATGGGCCGACTAGGCCATCTTTTTGAT  950

seq1  ACATATGTAGCTAGGGTCAAGAGCTCCGGGGTACTGG-TTAGTTCTTAAT  996
      ||||||||||||||||||||||||||||||||||||| ||||| ||  ||
seq2  ACATATGTAGCTAGGGTCAAGAGCTCCGGGGTACTGGTTTAGTCCT--AT  998

seq1  GTTGTTCCATCTATAGGGTTGC-AGGTCCCTTTAGCTCCTTGGGTACTTT  1045
      |||||||||||||||||||||| || ||||||||||| ||||||||||||
seq2  GTTGTTCCATCTATAGGGTTGCAAGTTCCCTTTAGCTTCTTGGGTACTTT  1048

seq1  CTCTAGCTCC-TCCATTGGGGGCCCTGTGA-TCCATCCAATAGCTGA-CT  1092
      |||||||||| || |||||||| ||||||| || ||||||||||||| ||
seq2  CTCTAGCTCCTTCAATTGGGGGTCCTGTGATTCAATCCAATAGCTGACCT  1098

seq1  GTGAGCATCCACTTCTGTGTTTGCTAG  1119
      ||||||||||||| ||||| |||||||
seq2  GTGAGCATCCACTCCTGTGCTTGCTAG  1125


seq1: chr1_191038469_191039457
seq2: B6Ng01-230N20.g_69_1060 (reverse)

seq1  ACAGTGCTATAACAATCCAAAAAAGAAAGAAA-GAAAAAAGCAGCATCCT  49
      |||||||||||||||| | |||||||| |||| |||||||||||||||||
seq2  ACAGTGCTATAACAATTCCAAAAAGAAGGAAAGGAAAAAAGCAGCATCCT  50

seq1  AAGAGAGCAACAGCAGGCACATATACAGACCACGTAAAA-TTCTAGGATA  98
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  AAGAGAGCAACAGCAGGCACATATACAGACC-CGTAAAATTTCTAGGATA  99

seq1  CGACATACTCACACCCAGACCAGTGTTAACAAAGATGGCTCTTTTTACTG  148
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CGACATACTCACACCCAGACCAGTGTTAACAAAGATGGCTC-TTTTACTG  148

seq1  AGAATTCATTTGCAGTCAG-AATTCTTGGCAG-CCCCACACTATCTTTTT  196
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  AGAATTCATTTGCAGTCAGAAATTCTTGGCAGCCCCCACACTATCTTTTT  198

seq1  TTCTTTTTTGCATACCCATAAACAC-AAACTCTGTCTTTCCACACCAGAA  245
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCTTTTTTGCATACCCATAAACACAAAACTCTGTCTTTCCACACCAGAA  248

seq1  ATAGGATTTGATTCTTGGCACCCCAACCCAAATCCCAGAAAGCTAAATAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATTTGATTCTTGGCACCCCAACCCAAATCCCAGAAAGCTAAATAT  298

seq1  TTCAACTTTGTCTTCATTGCAACTTGAAAATGAAGGGGTCCTGAAGGTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTTTGTCTTCATTGCAACTTGAAAATGAAGGGGTCCTGAAGGTCT  348

seq1  GGAGAAAGCAGAAAACTTTCCTTGGGTTTTACCTGAATTTTCTCTCAAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGCAGAAAACTTTCCTTGGGTTTTACCTGAATTTTCTCTCAAGA  398

seq1  AGCAGATTTCACAAAGTCACCAAGGCCTCGCGGGCTGCTCATGGCAGAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATTTCACAAAGTCACCAAGGCCTCGCGGGCTGCTCATGGCAGAGA  448

seq1  GAACTCTCTGCAAAGCCAGAGTTTTGCAGCCGTTAGGAAAATGGCAACTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTCTGCAAAGCCAGAGTTTTGCAGCCGTTAGGAAAATGGCAACTG  498

seq1  CCAAAAGGCTTTGGCTTGTCCAGGGTCCTGGGCTGCTTGTCTCTTATCTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGCTTTGGCTTGTCCAGGGTCCTGGGCTGCTTGTCTCTTATCTT  548

seq1  TTAGTTGTATTTGACCTCTCGCCTGGGAGGTTATTTCTTCTCACTCTGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTATTTGACCTCTCGCCTGGGAGGTTATTTCTTCTCACTCTGCA  598

seq1  GAGTGTGATTTCTCCTAATTTCGATAGAATCCCCAATAGTGGACAAAGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGATTTCTCCTAATTTCGATAGAATCCCCAATAGTGGACAAAGAA  648

seq1  CCTCTGTAAGGCATCTCAGCTGTGATGTGGCAAGTCAGAACCGGGCAGGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTAAGGCATCTCAGCTGTGATGTGGCAAGTCAGAACCGGGCAGGG  698

seq1  AAATGAGGAAATGACTCAGTGTATAATCATGTCCTGCGTGCCCATAGGCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGAAATGACTCAGTGTATAATCATGTCCTGCGTGCCCATAGGCA  748

seq1  GGCAGTTAGCATCCATTCTTGAGCATCAGACTCATTAGAATAAAGCACGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTAGCATCCATTCTTGAGCATCAGACTCATTAGAATAAAGCACGA  798

seq1  GAGATCAGCTGCTACAGAAGACAGAGCAGGAGAGGTGAGCGAGCACACAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAGCTGCTACAGAAGACAGAGCAGGAGAGGTGAGCGAGCACACAT  848

seq1  GTGCATGCCTGTGAGAGTATCCTGAAAACACAAAGAACTCTGTGGTTGGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGCCTGTGAGAGTATCCTGAAAACACAAAGAACTCTGTGGTTGGT  898

seq1  AAATACGAGGCCAGTGCTGATATGACGCCCAACGATATCATCATTATTGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACGAGGCCAGTGCTGATATGACGCCCAACGATATCATCATTATTGA  948

seq1  TTAATTTTAAAGCTACAAACCTTTCTGAGAAATACAAAGAATTC  989
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTAAAGCTACAAACCTTTCTGAGAAATACAAAGAATTC  992


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