BAC Information

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BAC

Clone NameB6Ng01-231F21
Chromosome1 (Build37)
Map Location 82,186,757 - 82,342,947
singlet/doubletdoublet
Overlap geneIrs1, Rhbdd1
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneCol4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231F21.bB6Ng01-231F21.g
ACCGA043987GA043988
length9261,140
definitionB6Ng01-231F21.b B6Ng01-231F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,342,236 - 82,342,947)(82,186,757 - 82,187,902)
sequence
gaattcacctctacctcttggagattgagtggcctaattattaaagaaca
gatgggacaggagatactacatatagtcacgcccccaaccttattcttca
tcccagaggagaagatagaacaatgtactatatagctagaaccctgtgtg
ttgactggcacttcagataaaatctgtcctaactgaactcaccttcctct
ctcccccccccccccccagagaacaaagggcaggcataagggacaatgac
aagagataagtggatgagggaaaagggaaaaggtatttgtctctggatag
agagaaaacagcatggcccacagacaaatggtggttaataaaagggaaac
cccgtgttaggatgaggtgtttaattttaactgggcatgttaattagagg
agccaaaaggggcttttgattgttggactttaatactttcacagctggac
ctaggtagttagtctcaggaggaagaactggccaaataaaggaatagtcc
ttgggaactagctttaggaatggaatctaatggtttttagcaaggcagag
ggaatgggggagaagggcaaggcctgccacagccatgtttgcaagccggc
tagagccccttcagcaatttcagtgttattctaattttacattctcctgt
ctctgtggcctctcttggaaaatgttctatggcctgggttctgcatccct
ggattttatttcatagatgctaagaaacctcacagaggaactagtgtttg
aaagaacatacttcggggaacaatgacggctttatctccaaggatgtgcc
acagagtcttgctatgtttcatgatttaggtatttctatttcctttccaa
aggaaaccacacctcagtgtgcagtattttcctaatactgaatacataca
ccttctccttcatacacataactctc
gaattccctaatgtgctttaaatcaggcctgcaagcttacttgattgttt
ctctatcttggtaatggggagaccccagcatgtaggacttctgcagaata
aaacactctttgcaattacatactatttgagtccagggtgtcattcttcg
gggaatcatggtcccatacaatacctgattggggaaacagtaagggttat
gattctttatctgaagaagggaattttccaatgggacaaatataactggt
tctcatttcatgaatatttgtatttgaatacatgaccttatccctccaca
atggcagacagtattactgaaaaaaaaaaaatcatgcttcctgttagccc
tggatgtcttagtttgggttttattgctatgaagagatgccttgactatg
gcaactcttatgaaggaaaacattttaattggggctgtcaggtttaaagg
tttaccctgctattgtcatgatggggagcatggcagcaggtgagcagaca
tggtgctggagaaggagctaagagttctacatctggatcggcaggcaaca
ggaaaagaggatgatattgggtctggcttaagcatctgaaacctcaaagt
ctactcctgttgatatatgttctccaacaaggacacacctactccaacaa
ggccacacccccaataatgccactccctatgaatctacaggggccatttt
cattcaaaccaccacagtggtgcatacctttaatcccagtactaggggat
cagaggcaagaagatatctgtgagttcagggtcagcctggtctatacaga
agcttccagcctagccaagtttacataattagactctgtcttatgatata
tataaacatgatcaatcgctgtgagttcaagactggcctggtctacataa
caagttccaagccagccatggctacatagagaaaaagagagttcctatca
cgtttcgtgactgaagaggaaaattctagcttggactgtttctttgagtc
cagggacagtttctccactgcctagaaacactcccagcaaataaatcctg
cctatgaatgataagcagtattccaggatcattgttttttagccagaccc
tgattcgttctaattttatccaggctcttctctactcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82342236_82342947
seq2: B6Ng01-231F21.b_49_760 (reverse)

seq1  GAAATAAAATCCAGGGATGCAGAACCCAGGCCATAGAACATTTTCCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAATCCAGGGATGCAGAACCCAGGCCATAGAACATTTTCCAAGA  50

seq1  GAGGCCACAGAGACAGGAGAATGTAAAATTAGAATAACACTGAAATTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCACAGAGACAGGAGAATGTAAAATTAGAATAACACTGAAATTGCT  100

seq1  GAAGGGGCTCTAGCCGGCTTGCAAACATGGCTGTGGCAGGCCTTGCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGCTCTAGCCGGCTTGCAAACATGGCTGTGGCAGGCCTTGCCCTT  150

seq1  CTCCCCCATTCCCTCTGCCTTGCTAAAAACCATTAGATTCCATTCCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCATTCCCTCTGCCTTGCTAAAAACCATTAGATTCCATTCCTAAA  200

seq1  GCTAGTTCCCAAGGACTATTCCTTTATTTGGCCAGTTCTTCCTCCTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTCCCAAGGACTATTCCTTTATTTGGCCAGTTCTTCCTCCTGAGA  250

seq1  CTAACTACCTAGGTCCAGCTGTGAAAGTATTAAAGTCCAACAATCAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTACCTAGGTCCAGCTGTGAAAGTATTAAAGTCCAACAATCAAAAG  300

seq1  CCCCTTTTGGCTCCTCTAATTAACATGCCCAGTTAAAATTAAACACCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTGGCTCCTCTAATTAACATGCCCAGTTAAAATTAAACACCTCA  350

seq1  TCCTAACACGGGGTTTCCCTTTTATTAACCACCATTTGTCTGTGGGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACACGGGGTTTCCCTTTTATTAACCACCATTTGTCTGTGGGCCAT  400

seq1  GCTGTTTTCTCTCTATCCAGAGACAAATACCTTTTCCCTTTTCCCTCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTCTCTCTATCCAGAGACAAATACCTTTTCCCTTTTCCCTCATC  450

seq1  CACTTATCTCTTGTCATTGTCCCTTATGCCTGCCCTTTGTTCTCTGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATCTCTTGTCATTGTCCCTTATGCCTGCCCTTTGTTCTCTGGGGG  500

seq1  GGGGGGGGGGAGAGAGGAAGGTGAGTTCAGTTAGGACAGATTTTATCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGAGAGAGGAAGGTGAGTTCAGTTAGGACAGATTTTATCTGA  550

seq1  AGTGCCAGTCAACACACAGGGTTCTAGCTATATAGTACATTGTTCTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAGTCAACACACAGGGTTCTAGCTATATAGTACATTGTTCTATCT  600

seq1  TCTCCTCTGGGATGAAGAATAAGGTTGGGGGCGTGACTATATGTAGTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTGGGATGAAGAATAAGGTTGGGGGCGTGACTATATGTAGTATC  650

seq1  TCCTGTCCCATCTGTTCTTTAATAATTAGGCCACTCAATCTCCAAGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCCATCTGTTCTTTAATAATTAGGCCACTCAATCTCCAAGAGGT  700

seq1  AGAGGTGAATTC  712
      ||||||||||||
seq2  AGAGGTGAATTC  712

seq1: chr1_82186757_82187902
seq2: B6Ng01-231F21.g_68_1207

seq1  GAATTCCCTAATGTGCTTTAAATCAGGCCTGCAAGCTTACTTGATTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAATGTGCTTTAAATCAGGCCTGCAAGCTTACTTGATTGTTT  50

seq1  CTCTATCTTGGTAATGGGGAGACCCCAGCATGTAGGACTTCTGCAGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTTGGTAATGGGGAGACCCCAGCATGTAGGACTTCTGCAGAATA  100

seq1  AAACACTCTTTGCAATTACATACTATTTGAGTCCAGGGTGTCATTCTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTCTTTGCAATTACATACTATTTGAGTCCAGGGTGTCATTCTTCG  150

seq1  GGGAATCATGGTCCCATACAATACCTGATTGGGGAAACAGTAAGGGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCATGGTCCCATACAATACCTGATTGGGGAAACAGTAAGGGTTAT  200

seq1  GATTCTTTATCTGAAGAAGGGAATTTTCCAATGGGACAAATATAACTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTATCTGAAGAAGGGAATTTTCCAATGGGACAAATATAACTGGT  250

seq1  TCTCATTTCATGAATATTTGTATTTGAATACATGACCTTATCCCTCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCATGAATATTTGTATTTGAATACATGACCTTATCCCTCCACA  300

seq1  ATGGCAGACAGTATTACTGAAAAAAAAAAAATCATGCTTCCTGTTAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGACAGTATTACTGAAAAAAAAAAAATCATGCTTCCTGTTAGCCC  350

seq1  TGGATGTCTTAGTTTGGGTTTTATTGCTATGAAGAGATGCCTTGACTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTCTTAGTTTGGGTTTTATTGCTATGAAGAGATGCCTTGACTATG  400

seq1  GCAACTCTTATGAAGGAAAACATTTTAATTGGGGCTGTCAGGTTTAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTTATGAAGGAAAACATTTTAATTGGGGCTGTCAGGTTTAAAGG  450

seq1  TTTACCCTGCTATTGTCATGATGGGGAGCATGGCAGCAGGTGAGCAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTGCTATTGTCATGATGGGGAGCATGGCAGCAGGTGAGCAGACA  500

seq1  TGGTGCTGGAGAAGGAGCTAAGAGTTCTACATCTGGATCGGCAGGCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGGAGAAGGAGCTAAGAGTTCTACATCTGGATCGGCAGGCAACA  550

seq1  GGAAAAGAGGATGATATTGGGTCTGGCTTAAGCATCTGAAACCTCAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAGGATGATATTGGGTCTGGCTTAAGCATCTGAAACCTCAAAGT  600

seq1  CTACTCCTGTTGATATATGTTCTCCAACAAGGACACACCTACTCCAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCTGTTGATATATGTTCTCCAACAAGGACACACCTACTCCAACAA  650

seq1  GGCCACACCCCCAATAATGCCACTCCCTATGAATCTACAGGGGCCATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACCCCCAATAATGCCACTCCCTATGAATCTACAGGGGCCATTTT  700

seq1  CATTCAAACCACCACAGTGGTGCATACCTTTAATCCCAGTACTAGGGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAACCACCACAGTGGTGCATACCTTTAATCCCAGTACTAGGGGAT  750

seq1  CAGAGGCAAGAAGATATCTGTGAGTTCAGGGTCAGCCTGGTCTATACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAAGAAGATATCTGTGAGTTCAGGGTCAGCCTGGTCTATACAGA  800

seq1  AGCTTCCAGCCTAGCCAAGTTTACATAATTAGACTCTGTCTTATGATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCAGCCTAGCCAAGTTTACATAATTAGACTCTGTCTTATGATATA  850

seq1  TATAAACATGATCAATCGCTGTGAGTTCAAGACTGGCCTGGTCTACATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACATGATCAATCGCTGTGAGTTCAAGACTGGCCTGGTCTACATAA  900

seq1  CAAGTTCCAAGCCAGCCATGGCTACATAGAGAAAAAGAGAGTTCCTATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCCAAGCCAGCCATGGCTACATAGAGAAAAAGAGAGTTCCTATCA  950

seq1  CGTTTCGTGACTGAAGAGG-AAATTCTAGCTTTGGACTGTTTCTTTGAGT  999
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  CGTTTCGTGACTGAAGAGGAAAATTCTAGC-TTGGACTGTTTCTTTGAGT  999

seq1  CCAGGGACAGTTTCTCCACTGCCTAG-AACACTCCCAGCAAATAAATCTT  1048
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  CCAGGGACAGTTTCTCCACTGCCTAGAAACACTCCCAGCAAATAAATCCT  1049

seq1  GGCCTATGAATGATAAGCAGTATTTCCCAGAATCATTTGTTTTTTAGCAA  1098
       |||||||||||||||||||||||  |||| |||| |||||||||||| |
seq2  -GCCTATGAATGATAAGCAGTATT--CCAGGATCA-TTGTTTTTTAGCCA  1095

seq1  GACCTTGATTCGTCTCTATTTTTATCAAGCCTCTTCCTCCTACTCTTG  1146
      |||| |||||||| |||| ||||||| || ||||||   |||||||||
seq2  GACCCTGATTCGT-TCTAATTTTATCCAGGCTCTTC--TCTACTCTTG  1140