BAC Information

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BAC

Clone NameB6Ng01-231P07
Chromosome1 (Build37)
Map Location 57,019,720 - 57,136,711
singlet/doubletdoublet
Overlap geneSatb2, EG329160, 9130024F11Rik, LOC100042869
Upstream gene9130227L01Rik, Hsfy2
Downstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231P07.bB6Ng01-231P07.g
ACCGA044415GA044416
length1,1211,112
definitionB6Ng01-231P07.b B6Ng01-231P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,019,720 - 57,020,848)(57,135,604 - 57,136,711)
sequence
gaattctcctgcctcagtctctcaagtgctgctatgtcaggcataagcca
ccatgaccaataccgcgaaacatttttacagaaatgccatggtatgtcag
gctcatcaaatatacgtccatataaaggaaagaaataaaagctcaattgc
tggatagcaagactggaagaaatgtttcttcagaaaagagagaacaatac
aatgtagaagttacacctgtgtcaaaagtagaaaaataaaaaatggaata
aaataaaatgaaaaaataaaccctctggaagccctcaactgacctgtctt
agctcagcctcaattgcattcagacattgactttggctctggaaatggca
atcactcatccataagcagcaggctgatgaatcctttgtatttagagatc
tgtttctaatgctctgacagtttcaaaacctttcctgtactttaaaacaa
gagaaattcacagctcacctgactggcttgctaaatgactgctgaagagc
tgtgatgattggaaggagaggagacctgtacaatcaaagccaagagcagg
gaatcgctccttctcaaattgccataaagaaaataaggaagcgaaaaggc
aaactcttctgcacttcctcagctaagtataaaggtctcctactggaaac
cactttcagttacccagccaccgcccccccccttttttttttcaaaaaat
aatgagttaaactgtatgggttcaatccaacatttcactgctgttcctgt
tctcggggagcagggggaaagggccatgctgccaaagcttctgaaaagag
agtttgggctgctaatttcccgttcacaaaatctaaattctccttatgca
tctcccacaactcacgaaatactatgaaacagtattatatcattgcaatt
gagacatttttatcaaaataaagagggatgatgccaacatttcatttgtc
atttcccgcttgtcactttctactgacaaactgtacacatacaactttgt
caatgctctgtctttaaatatgttccaaatgccattgtactcagtctcag
tgtaagaaagatagcacagtaactatgtactatacatttcttagagagtt
ttcagtgtacctataattaaa

gaattcctgggaatggtctatattctattgtaaagacaataatgactctt
acccatcaaataatatatccaccttccttaccatgttgtctccccaagag
agattggtaaatgtggtacaattcgctgacttcagaatgttagtaatgtc
ttaagaattctccagccctggggtttgaatgtcacatgcgtgctgcctga
cagctagcactggagtctgagtgagtctatgtaatcaacacatcccttat
tttctccaatttgcttggctggttccaagaccttgtttaattcctctgaa
ttcttgaattctgtttattgaagtgtagacagaaatcacaaaggcaagtg
atacgtctctgaaacaagggatgctctctaccttgcagcaggttctgaat
aataatggatttgagaagcaaagccagaatgaagtccactgtgggtatca
ttcccagcaggtctggccttgccccttggagaagacagaaatgtcaagtt
tcacgacactattgtggtcgttgttgtaagaggagaggataatagaaggc
ttttgggtttcaaacaactgatttacgatgcaaaactgctgagtattttt
ttgtgagggaatgtatcattcctttttatttcttgctaaagtcaagacct
tgaatatttgaccagaaatattggtgcctactttaaaaccttaggtagta
tagctccttggtccatcacaagcagcagcagagggctctttggtctccat
ctgtatccatctccatccatactgtattcctggctccacccctccccctc
cctactgttatctgaacaaatcatatatatagcttatgtttttgtcggtt
tgggtatcacagataaaaagaagggtttctttcatttgttctaaacatga
agagcccttacccggctgttttgaattaggagctgaatttctttcctgtt
tcagagatcacagcgctgaaggattctgtgtgtctaagcttaaagagctg
agtaatgtttgcgaaagctggtgagtgtccctgttgttaacatacttggc
ctatgtatgtggcgaaccactgggcatcgagcctgcagtaaagtcttgag
ggtcctgctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_57019720_57020848
seq2: B6Ng01-231P07.b_48_1168

seq1  GAATTCTCCTGCCTCAGTCTCTCAAGTGCTGCTATGTCAGGCATAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGCCTCAGTCTCTCAAGTGCTGCTATGTCAGGCATAAGCCA  50

seq1  CCATGACCAATACCGCGAAACATTTTTACAGAAATGCCATGGTATGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACCAATACCGCGAAACATTTTTACAGAAATGCCATGGTATGTCAG  100

seq1  GCTCATCAAATATACGTCCATATAAAGGAAAGAAATAAAAGCTCAATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCAAATATACGTCCATATAAAGGAAAGAAATAAAAGCTCAATTGC  150

seq1  TGGATAGCAAGACTGGAAGAAATGTTTCTTCAGAAAAGAGAGAACAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGCAAGACTGGAAGAAATGTTTCTTCAGAAAAGAGAGAACAATAC  200

seq1  AATGTAGAAGTTACACCTGTGTCAAAAGTAGAAAAATAAAAAATGGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGAAGTTACACCTGTGTCAAAAGTAGAAAAATAAAAAATGGAATA  250

seq1  AAATAAAATGAAAAAATAAACCCTCTGGAAGCCCTCAACTGACCTGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATGAAAAAATAAACCCTCTGGAAGCCCTCAACTGACCTGTCTT  300

seq1  AGCTCAGCCTCAATTGCATTCAGACATTGACTTTGGCTCTGGAAATGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCCTCAATTGCATTCAGACATTGACTTTGGCTCTGGAAATGGCA  350

seq1  ATCACTCATCCATAAGCAGCAGGCTGATGAATCCTTTGTATTTAGAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCATCCATAAGCAGCAGGCTGATGAATCCTTTGTATTTAGAGATC  400

seq1  TGTTTCTAATGCTCTGACAGTTTCAAAACCTTTCCTGTACTTTAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAATGCTCTGACAGTTTCAAAACCTTTCCTGTACTTTAAAACAA  450

seq1  GAGAAATTCACAGCTCACCTGACTGGCTTGCTAAATGACTGCTGAAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATTCACAGCTCACCTGACTGGCTTGCTAAATGACTGCTGAAGAGC  500

seq1  TGTGATGATTGGAAGGAGAGGAGACCTGTACAATCAAAGCCAAGAGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGATTGGAAGGAGAGGAGACCTGTACAATCAAAGCCAAGAGCAGG  550

seq1  GAATCGCTCCTTCTCAAATTGCCATAAAGAAAATAAGGAAGCGAAAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGCTCCTTCTCAAATTGCCATAAAGAAAATAAGGAAGCGAAAAGGC  600

seq1  AAACTCTTCTGCACTTCCTCAGCTAAGTATAAAGGTCTCCTACTGGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTCTGCACTTCCTCAGCTAAGTATAAAGGTCTCCTACTGGAAAC  650

seq1  CACTTTCAGTTACCCAGCCACCGCCCCCCCCCTTTTTTTTTTCAAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAGTTACCCAGCCACCGCCCCCCCCCTTTTTTTTTTCAAAAAAT  700

seq1  AATGAGTTAAACTGTATGGGTTCAATCCAACATTTCACTGCTGTTCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTTAAACTGTATGGGTTCAATCCAACATTTCACTGCTGTTCCTGT  750

seq1  TCTCGGGGAGCAGGGGGAAAGGGCCATGCTGCCAAAGCTTCTGAAAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGGGAGCAGGGGGAAAGGGCCATGCTGCCAAAGCTTCTGAAAAGAG  800

seq1  AGTTTGGGCTGCTAATTTCCCGTTCACAAAATCTAAATTCTCCTTATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGCTGCTAATTTCCCGTTCACAAAATCTAAATTCTCCTTATGCA  850

seq1  TCTCCCACAACTCACGAAATACTATGAAACAGTATTATATCATTGCAAAT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTCCCACAACTCACGAAATACTATGAAACAGTATTATATCATTGC-AAT  899

seq1  TGAGACATTTTTATCAAAATAAAGAGGGATGATGCCAACATTTCATTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATTTTTATCAAAATAAAGAGGGATGATGCCAACATTTCATTTGT  949

seq1  CATTTCCCGCTTGTCACTTTCTACTGACAAACTGTTACACATACAACTTT  1000
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  CATTTCCCGCTTGTCACTTTCTACTGACAAACTG-TACACATACAAC-TT  997

seq1  TGTCAAATGCTCTGTCTTTAAATATGTTCCAAAATGCCATTGTACCTCAG  1050
      |||| ||||||||||||||||||||||||| ||||||||||||| |||||
seq2  TGTC-AATGCTCTGTCTTTAAATATGTTCC-AAATGCCATTGTA-CTCAG  1044

seq1  TCTCAGTGTAAGAAAGATAGCACAAGTTACTATGTTACTATACATTTCTT  1100
      ||||||||||||||||||||||| ||| |||||| |||||||||||||||
seq2  TCTCAGTGTAAGAAAGATAGCAC-AGTAACTATG-TACTATACATTTCTT  1092

seq1  AGAGAGTTTTTTAAAGTGTAC---TTATTAAA  1129
      ||||||||||    |||||||   | ||||||
seq2  AGAGAGTTTT---CAGTGTACCTATAATTAAA  1121


seq1: chr1_57135604_57136711
seq2: B6Ng01-231P07.g_68_1179 (reverse)

seq1  GGCAGCAGGACCCTCAGACCTCTACTGCAGCCTCGGATGCCCCAGTG--T  48
      ||||||||||||||||   || |||||||| ||| |||| |||||||  |
seq2  GGCAGCAGGACCCTCAAGACTTTACTGCAGGCTC-GATG-CCCAGTGGTT  48

seq1  CGCCACATACATA-GCCAAGTATG-TAAC-ACAGGGACCACTCACCAGCT  95
      ||||||||||||| |||||||||| |||| ||||||| ||||||||||||
seq2  CGCCACATACATAGGCCAAGTATGTTAACAACAGGGA-CACTCACCAGCT  97

seq1  TTCGCAAACATTACTCAGCTCTTTAAGCTTAGACACACAGAATCC-TCAG  144
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCGCAAACATTACTCAGCTCTTTAAGCTTAGACACACAGAATCCTTCAG  147

seq1  CGCTGTGATCTCTGAAACAGGAAAGAAATTCAGCTCCTAATTCAAAACAG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTGATCTCTGAAACAGGAAAGAAATTCAGCTCCTAATTCAAAACAG  197

seq1  CCGGGTAAGGGCTCTTCATGTTTAGAACAAATG-AAGAAACCCCTTCTTT  243
      ||||||||||||||||||||||||||||||||| ||||||||| |  |||
seq2  CCGGGTAAGGGCTCTTCATGTTTAGAACAAATGAAAGAAACCCTTCTTTT  247

seq1  TATCTGTGATACCCAAACCGACAAAAACATAAGCTATATATATGATTTGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGATACCCAAACCGACAAAAACATAAGCTATATATATGATTTGT  297

seq1  TCAGATAACAGTAGGGAGGGGGAGGGGTGGAGCCAGGAATACAGTATGGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAACAGTAGGGAGGGGGAGGGGTGGAGCCAGGAATACAGTATGGA  347

seq1  TGGAGATGGATACAGATGGAGACCAAAGAGCCCTCTGCTGCTGCTTGTGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATGGATACAGATGGAGACCAAAGAGCCCTCTGCTGCTGCTTGTGA  397

seq1  TGGACCAAGGAGCTATACTACCTAAGGTTTTAAAGTAGGCACCAATATTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAAGGAGCTATACTACCTAAGGTTTTAAAGTAGGCACCAATATTT  447

seq1  CTGGTCAAATATTCAAGGTCTTGACTTTAGCAAGAAATAAAAAGGAATGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAAATATTCAAGGTCTTGACTTTAGCAAGAAATAAAAAGGAATGA  497

seq1  TACATTCCCTCACAAAAAAATACTCAGCAGTTTTGCATCGTAAATCAGTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCCTCACAAAAAAATACTCAGCAGTTTTGCATCGTAAATCAGTT  547

seq1  GTTTGAAACCCAAAAGCCTTCTATTATCCTCTCCTCTTACAACAACGACC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAACCCAAAAGCCTTCTATTATCCTCTCCTCTTACAACAACGACC  597

seq1  ACAATAGTGTCGTGAAACTTGACATTTCTGTCTTCTCCAAGGGGCAAGGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGTGTCGTGAAACTTGACATTTCTGTCTTCTCCAAGGGGCAAGGC  647

seq1  CAGACCTGCTGGGAATGATACCCACAGTGGACTTCATTCTGGCTTTGCTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTGCTGGGAATGATACCCACAGTGGACTTCATTCTGGCTTTGCTT  697

seq1  CTCAAATCCATTATTATTCAGAACCTGCTGCAAGGTAGAGAGCATCCCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATCCATTATTATTCAGAACCTGCTGCAAGGTAGAGAGCATCCCTT  747

seq1  GTTTCAGAGACGTATCACTTGCCTTTGTGATTTCTGTCTACACTTCAATA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAGACGTATCACTTGCCTTTGTGATTTCTGTCTACACTTCAATA  797

seq1  AACAGAATTCAAGAATTCAGAGGAATTAAACAAGGTCTTGGAACCAGCCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATTCAAGAATTCAGAGGAATTAAACAAGGTCTTGGAACCAGCCA  847

seq1  AGCAAATTGGAGAAAATAAGGGATGTGTTGATTACATAGACTCACTCAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTGGAGAAAATAAGGGATGTGTTGATTACATAGACTCACTCAGA  897

seq1  CTCCAGTGCTAGCTGTCAGGCAGCACGCATGTGACATTCAAACCCCAGGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGCTAGCTGTCAGGCAGCACGCATGTGACATTCAAACCCCAGGG  947

seq1  CTGGAGAATTCTTAAGACATTACTAACATTCTGAAGTCAGCGAATTGTAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAATTCTTAAGACATTACTAACATTCTGAAGTCAGCGAATTGTAC  997

seq1  CACATTTACCAATCTCTCTTGGGGAGACAACATGGTAAGGAAGGTGGATA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTACCAATCTCTCTTGGGGAGACAACATGGTAAGGAAGGTGGATA  1047

seq1  TATTATTTGATGGGTAAGAGTCATTATTGTCTTTACAATAGAATATAGAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTGATGGGTAAGAGTCATTATTGTCTTTACAATAGAATATAGAC  1097

seq1  CATTCCCAGGAATTC  1108
      |||||||||||||||
seq2  CATTCCCAGGAATTC  1112


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