BAC Information

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BAC

Clone NameB6Ng01-232F06
Chromosome1 (Build37)
Map Location 51,403,420 - 51,536,728
singlet/doubletdoublet
Overlap geneObfc2a
Upstream geneLOC100041993, Tmeff2, Sdpr, LOC383504
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232F06.bB6Ng01-232F06.g
ACCGA044693GA044694
length1,1611,177
definitionB6Ng01-232F06.b B6Ng01-232F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,535,567 - 51,536,728)(51,403,420 - 51,404,607)
sequence
gaattcagggagtggctaggtcccccaccccaccccaccccacccagatc
cctggccacaactttgctctattatattgtttgtttttcaaggcaaggtt
tctgtgtagctcaggctgaccttgaactcacagattgcctgagattcctg
aatggtgggattaaaggtgtgcttcacctctaggctgctcaatgttctta
acatggcttgttatttattcttaaacttttctctatgctgtttctcggta
ttatccttaaaaagaaaaagaagtgtgtttttgatatatacattttctat
tttccacagtatttgcttatatgattctctaacatgctagaatatactct
gctgttcccatttcttcaatctgttttggagggttacaatcatactactt
aaacataaaatacttctggttgaagcctcctagggtcaagattgcctaaa
ttgaaatccagtttggttattctctagtgagttttattacttgtaaacgg
gggttaaaattatcactcaccatgagattaaataacaggtaattattttc
aatagaaaattgatgaaaagaaatactgatcacagatctatttgcgactg
tacttgggcaatttatttatgaccccattttatcctctatgaggcaagga
tcctagttttattgttcagattgttaaattctggctaggaagcttaacca
actaatttcaaggtcacacaattagcctccagcttgtttggtggcaaagc
acaaccctccctttcaggttttgttttaaggttccccttcaccagtgtat
ggttaactcatcttagttatataaaagccaagtgcaatttaaagaaaagg
gttaaggaaaaaatgaaatatctgtgggaacttaactatgtatggctatt
atcagcatgaaaagaggtttatttacaagttacttttaaaaagaccacct
cgtgtttctggatcccaatttaaacacctctaaagtacgaaggttgatcg
cagttgcctgcgactgggaccactctcttgggagcctcggaacactttag
ttccgcccttttttctctctcttgatctgctcgatcactcttcttcgctc
ttctcaactgcatacttgctctaccacggggattcggaaacatctggagt
tccacgtgatc

gaattcaaccttgtgattgcaaaaagtagcctctgccagcattctgatca
gcttatgcatcttatttcaaatctagacttcaagtattcccaggttgaaa
taagtagtattattatttcaaaaaaaaatcatgtttttcttgagaaaaaa
atcttcttttaatttaaaatataattacatcatttctttcttccctctct
tctctctcccatgtgtgactaaccccttccccaaatttatatcattacca
aataaccactgcaggttcatccctgactgtcagtcaagaggtttattcct
gaaaaccagtcaggaggttcgtcccaataaaagactgagcaatcatcaat
tacctgtagttttcatctaggtatggggctccaagagattttcaccatct
acattggaatgccagctgttgttggaattgttcgaatcttgttaggcagc
catgttgccgaaggttcatggatgtcgtatttttagagaatccattagct
gtatatgctgatgctggagtaaaattccacatacccgggaggaggacaaa
gccaaggcctccctggacaacttagtgagatcctaaaactttaaatgaat
aaaaaggctggtgatatatctccatggtaggtttgcctagcacagataaa
gctctatatttaatgcccataatctcatttttttaaaaagtaaaaaaaaa
aaaaaaaaaacgtggtgttttctttgaagaacaagaaatcttgattagct
taagaactcttgggcaggctagtgatacagctcggtgtggaaagacactt
gccaccaaaatgaaggcttgcgtttgatcccagggatcctcccagtggat
ggtgagaactgactccccagagttgccctctaaccttttgtacagacacc
ttagcacacccctatccacacgcataaataagtagtaattacttttataa
aaagactcttggtcttggggagtcatcataatttccagatggataagaga
tagcaattgagcacaatagactgtaactgagccatcaaatatgaccacta
aatggaatctgagttctcgaagggagtgagcatgacccacgtgagttaag
agcagtgttgctcctgcgatgcttgcaatccaatccagtaccatatgaat
gacacacacatctgcaattcagttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51535567_51536728
seq2: B6Ng01-232F06.b_46_1206 (reverse)

seq1  GATCACGTGGAACT-CAGATG-TTCCGAA-CCCCGTGGTTAGAGCAAGTA  47
      |||||||||||||| |||||| ||||||| |||||||| |||||||||||
seq2  GATCACGTGGAACTCCAGATGTTTCCGAATCCCCGTGG-TAGAGCAAGTA  49

seq1  TGCAGTTGAGAAGGAACGGAG-AGAGTGATCGAGCAGGATCAAGGAGAGA  96
      |||||||||||| || || || |||||||||||||| |||||| ||||||
seq2  TGCAGTTGAGAA-GAGCGAAGAAGAGTGATCGAGCA-GATCAA-GAGAGA  96

seq1  GAAAAAAGGGC-GAACTAAAGGTGTCCGAGGCTTCCAAGAGAGTGGTTCC  145
      ||||||||||| |||||||||   ||||||||| |||||||||||| |||
seq2  GAAAAAAGGGCGGAACTAAAGTGTTCCGAGGCTCCCAAGAGAGTGG-TCC  145

seq1  CAGTCGCAGGCAACTTGGCGATCAACCTTCGTACTTTAGAGGTGTTTAAA  195
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  CAGTCGCAGGCAACT--GCGATCAACCTTCGTACTTTAGAGGTGTTTAAA  193

seq1  TTGGGATCCAGAAACACGAGGTGGTCTTTTTAAAAGTAACTTGTAAATAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATCCAGAAACACGAGGTGGTCTTTTTAAAAGTAACTTGTAAATAA  243

seq1  ACCTCTTTTCATGCTGATAATAGCCATACATAGTTAAGTT-CCACAGATA  294
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACCTCTTTTCATGCTGATAATAGCCATACATAGTTAAGTTCCCACAGATA  293

seq1  TTTCATTTTTTCCTTAACCCTTTTCTTTAAATTGCACTTGGCTTTTATAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTTCCTTAACCCTTTTCTTTAAATTGCACTTGGCTTTTATAT  343

seq1  AACTAAGATGAGTTAACCATACACTGGTGAAGGGGAACCTTAAAACAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGATGAGTTAACCATACACTGGTGAAGGGGAACCTTAAAACAAAA  393

seq1  CCTGAAAGGGAGGGTTGTGCTTTGCCACCAAACAAGCTGGAGGCTAATTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGGGAGGGTTGTGCTTTGCCACCAAACAAGCTGGAGGCTAATTG  443

seq1  TGTGACCTTGAAATTAGTTGGTTAAGCTTCCTAGCCAGAATTTAACAATC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCTTGAAATTAGTTGGTTAAGCTTCCTAGCCAGAATTTAACAATC  493

seq1  TGAACAATAAAACTAGGATCCTTGCCTCATAGAGGATAAAATGGGGTCAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAATAAAACTAGGATCCTTGCCTCATAGAGGATAAAATGGGGTCAT  543

seq1  AAATAAATTGCCCAAGTACAGTCGCAAATAGATCTGTGATCAGTATTTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTGCCCAAGTACAGTCGCAAATAGATCTGTGATCAGTATTTCT  593

seq1  TTTCATCAATTTTCTATTGAAAATAATTACCTGTTATTTAATCTCATGGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAATTTTCTATTGAAAATAATTACCTGTTATTTAATCTCATGGT  643

seq1  GAGTGATAATTTTAACCCCCGTTTACAAGTAATAAAACTCACTAGAGAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATAATTTTAACCCCCGTTTACAAGTAATAAAACTCACTAGAGAAT  693

seq1  AACCAAACTGGATTTCAATTTAGGCAATCTTGACCCTAGGAGGCTTCAAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACTGGATTTCAATTTAGGCAATCTTGACCCTAGGAGGCTTCAAC  743

seq1  CAGAAGTATTTTATGTTTAAGTAGTATGATTGTAACCCTCCAAAACAGAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTATTTTATGTTTAAGTAGTATGATTGTAACCCTCCAAAACAGAT  793

seq1  TGAAGAAATGGGAACAGCAGAGTATATTCTAGCATGTTAGAGAATCATAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAATGGGAACAGCAGAGTATATTCTAGCATGTTAGAGAATCATAT  843

seq1  AAGCAAATACTGTGGAAAATAGAAAATGTATATATCAAAAACACACTTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATACTGTGGAAAATAGAAAATGTATATATCAAAAACACACTTCT  893

seq1  TTTTCTTTTTAAGGATAATACCGAGAAACAGCATAGAGAAAAGTTTAAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTAAGGATAATACCGAGAAACAGCATAGAGAAAAGTTTAAGA  943

seq1  ATAAATAACAAGCCATGTTAAGAACATTGAGCAGCCTAGAGGTGAAGCAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAACAAGCCATGTTAAGAACATTGAGCAGCCTAGAGGTGAAGCAC  993

seq1  ACCTTTAATCCCACCATTCAGGAATCTCAGGCAATCTGTGAGTTCAAGGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAATCCCACCATTCAGGAATCTCAGGCAATCTGTGAGTTCAAGGT  1043

seq1  CAGCCTGAGCTACACAGAAACCTTGCCTTGAAAAACAAACAATATAATAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAGCTACACAGAAACCTTGCCTTGAAAAACAAACAATATAATAG  1093

seq1  AGCAAAGTTGTGGCCAGGGATCTGGGTGGGGTGGGGTGGGGTGGGGGACC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTTGTGGCCAGGGATCTGGGTGGGGTGGGGTGGGGTGGGGGACC  1143

seq1  TAGCCACTCCCTGAATTC  1162
      ||||||||||||||||||
seq2  TAGCCACTCCCTGAATTC  1161


seq1: chr1_51403420_51404607
seq2: B6Ng01-232F06.g_69_1245

seq1  GAATTCAACCTTGTGATTGCAAAAAGTAGCCTCTGCCAGCATTCTGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTTGTGATTGCAAAAAGTAGCCTCTGCCAGCATTCTGATCA  50

seq1  GCTTATGCATCTTATTTCAAATCTAGACTTCAAGTATTCCCAGGTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGCATCTTATTTCAAATCTAGACTTCAAGTATTCCCAGGTTGAAA  100

seq1  TAAGTAGTATTATTATTTCAAAAAAAAATCATGTTTTTCTTGAGAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGTATTATTATTTCAAAAAAAAATCATGTTTTTCTTGAGAAAAAA  150

seq1  ATCTTCTTTTAATTTAAAATATAATTACATCATTTCTTTCTTCCCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTTTAATTTAAAATATAATTACATCATTTCTTTCTTCCCTCTCT  200

seq1  TCTCTCTCCCATGTGTGACTAACCCCTTCCCCAAATTTATATCATTACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCATGTGTGACTAACCCCTTCCCCAAATTTATATCATTACCA  250

seq1  AATAACCACTGCAGGTTCATCCCTGACTGTCAGTCAAGAGGTTTATTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCACTGCAGGTTCATCCCTGACTGTCAGTCAAGAGGTTTATTCCT  300

seq1  GAAAACCAGTCAGGAGGTTCGTCCCAATAAAAGACTGAGCAATCATCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCAGTCAGGAGGTTCGTCCCAATAAAAGACTGAGCAATCATCAAT  350

seq1  TACCTGTAGTTTTCATCTAGGTATGGGGCTCCAAGAGATTTTCACCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTAGTTTTCATCTAGGTATGGGGCTCCAAGAGATTTTCACCATCT  400

seq1  ACATTGGAATGCCAGCTGTTGTTGGAATTGTTCGAATCTTGTTAGGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGAATGCCAGCTGTTGTTGGAATTGTTCGAATCTTGTTAGGCAGC  450

seq1  CATGTTGTTGAAGGTTCATGGATGTCGTATTTTTAGAGAATCCATTAGCT  500
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGCCGAAGGTTCATGGATGTCGTATTTTTAGAGAATCCATTAGCT  500

seq1  GTATATGCTGATGCTGGAGTAAAATTCCACATACCCGGGAGGAGGACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGCTGATGCTGGAGTAAAATTCCACATACCCGGGAGGAGGACAAA  550

seq1  GCCAAGGCCTCCCTGGACAACTTAGTGAGATCCTAAAACTTTAAATGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCCTCCCTGGACAACTTAGTGAGATCCTAAAACTTTAAATGAAT  600

seq1  AAAAAGGCTGGTGATATATCTCCATGGTAGGTTTGCCTAGCACAGATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGCTGGTGATATATCTCCATGGTAGGTTTGCCTAGCACAGATAAA  650

seq1  GCTCTATATTTAATGCCCATAATCTCATTTTTTTAAAAAGTAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTCTATATTTAATGCCCATAATCTCATTTTTTTAAAAAGT-AAAAAAAA  699

seq1  AAAAAAAAAAACGTGGTGTTTTCTTTGAAGAACAAGAAATCTTGATTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACGTGGTGTTTTCTTTGAAGAACAAGAAATCTTGATTAGC  749

seq1  TTAAGAACTCTT-GGCAGGCTAGTGATACAGCTCGGTGTGGAAAGACACT  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACTCTTGGGCAGGCTAGTGATACAGCTCGGTGTGGAAAGACACT  799

seq1  TGCCACCAAAATGAAGGCTTGCGTTTGATCCCA-GGATCCTCCCAGTGGA  848
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCCACCAAAATGAAGGCTTGCGTTTGATCCCAGGGATCCTCCCAGTGGA  849

seq1  TGGTGAGAACTGACTCCCCAGAGTTGCCCTCTAACC-TTTGTACAGACAC  897
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGTGAGAACTGACTCCCCAGAGTTGCCCTCTAACCTTTTGTACAGACAC  899

seq1  CTTAGCACACCCCTATCCACACGCATAAATAAGTAGTAATAACTTTTAT-  946
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  CTTAGCACACCCCTATCCACACGCATAAATAAGTAGTAATTACTTTTATA  949

seq1  AAAAGACTCTTGGTCTT-GGGAGTCATCATATTTTCCAGATGGATAAAGA  995
      ||||||||||||||||| ||||||||||||| ||||||||||||| ||||
seq2  AAAAGACTCTTGGTCTTGGGGAGTCATCATAATTTCCAGATGGAT-AAGA  998

seq1  GATAGCAATTGAGCACAATTAGAACTGTAACTGAAGCCATCAAATATGAA  1045
      |||||||||||||||||| ||| |||||||||| ||||||||||||||| 
seq2  GATAGCAATTGAGCACAA-TAG-ACTGTAACTG-AGCCATCAAATATGAC  1045

seq1  CACTAAAAGGGAAATCTGAAGTCCTCG-AGGGAGTGGAGCAATGACCCAC  1094
      ||||||| ||  |||||| ||| |||| ||||||| |||| |||||||||
seq2  CACTAAATGG--AATCTG-AGTTCTCGAAGGGAGT-GAGC-ATGACCCAC  1090

seq1  GTGAGTTAAGAGCAAGTGTTGCTCCTGCAGAAGGCTGCACTTCCAATCCC  1144
      ||||||||||||| |||||||||||||| || |  ||||  |||||| ||
seq2  GTGAGTTAAGAGC-AGTGTTGCTCCTGC-GATGCTTGCA-ATCCAAT-CC  1136

seq1  AGCACCCATATG-ATGGCACACAACCATCTGCAATTCCAGTTCTG  1188
      || | ||||||| ||| ||||||  ||||||||||| ||||||||
seq2  AGTA-CCATATGAATGACACACA--CATCTGCAATT-CAGTTCTG  1177


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